View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17842_high_13 (Length: 323)
Name: NF17842_high_13
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17842_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 5500975 - 5501271
Alignment:
| Q |
16 |
tggagttcactttaaactattatcatcatataaattagttttcattttgaattccttcccatgcagaagatttattgagaccnnnnnnngggatataaga |
115 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5500975 |
tggagttcactttaaactatcatcatcatataaattagttttcattttgaattccttcccatgcagaagatttattgagaccaaaaaaagggatataaga |
5501074 |
T |
|
| Q |
116 |
aaagcaactaaaaaggatacagtgtgtcacaagatagagaaacatatacacttccaaacttacatgaccaagaaggttaaggcgatgtagagggtcacga |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||| |
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| T |
5501075 |
aaagcaactaaaaaggatacagtgtgtcacaagatagagaaacatatacacttccaaacttacatgaccaagaaggttaagacggtgtagtgggtcgcga |
5501174 |
T |
|
| Q |
216 |
aatccatgattctttctaccgctaattatctcaagtacaacgactccaaaactataaacatcagattttatggagaaggatccatccgctgcatatt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5501175 |
aatccatgattctttctaccgctaattatctcaagtagaacaactccaaaactataaacatcagattttattgagaaggatccatccgctgcatatt |
5501271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 5488160 - 5488456
Alignment:
| Q |
16 |
tggagttcactttaaactattatcatcatataaattagttttcattttgaattccttcccatgcagaagatttattgagaccnnnnnnngggatataaga |
115 |
Q |
| |
|
||||||||| |||||| || ||||||||||| |||||||||||||||||| || |||||||||||| ||||||||||||||| |||||||| | |
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| T |
5488160 |
tggagttcattttaaattagtatcatcatatgaattagttttcattttgagtttcttcccatgcagtagatttattgagacccaaaaaagggatatatgg |
5488259 |
T |
|
| Q |
116 |
aaagcaactaaaaaggatacagtgtgtcacaagatagagaaacatatacacttccaaacttacatgaccaagaaggttaaggcgatgtagagggtcacga |
215 |
Q |
| |
|
|||||||||||||| | | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
5488260 |
aaagcaactaaaaaataaatagtgtgtcacaagatagagaaacatatacacttcaaaacttacatgaccaagaaggttaagacgatgtagagggtcacga |
5488359 |
T |
|
| Q |
216 |
aatccatgattctttctaccgctaattatctcaagtacaacgactccaaaactataaacatcagattttatggagaaggatccatccgctgcatatt |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||| || |||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
5488360 |
aatccatgattctttctaccgctaattatctcaagtagaacaactccaaagctgaaaacatcagattttattgagaaggatccatccgctgcatatt |
5488456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 5523845 - 5524143
Alignment:
| Q |
16 |
tggagttcactttaaactattatcatcatataaattagttttcattttgaattccttcccatgcagaagatttattgagaccnnnnnnngggatataaga |
115 |
Q |
| |
|
||||||||||||||||| |||||||| ||| ||||||||||||||||||||| |||| ||||||||| |||||||||||| || ||||| | |
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|
| T |
5523845 |
tggagttcactttaaacaattatcatggtatgaattagttttcattttgaatttcttcacatgcagaacatttattgagactaaaaaaaggaatatatgg |
5523944 |
T |
|
| Q |
116 |
aaagcaactaaaaagga--tacagtgtgtcacaagatagagaaacatatacacttccaaacttacatgaccaagaaggttaaggcgatgtagagggtcac |
213 |
Q |
| |
|
|||||||||||||| | |||| |||| |||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
5523945 |
aaagcaactaaaaaataaatacaatgtggtggaagatagagaaacatatacatgtcaaaacttacatgaccaagaaggttaagacgatgtagagggtcac |
5524044 |
T |
|
| Q |
214 |
gaaatccatgattctttctaccgctaattatctcaagtacaacgactccaaaactataaacatcagattttatggagaaggatccatccgctgcatatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| ||||||| ||||||||||| |
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|
| T |
5524045 |
gaaatccatgattctttctaccgctaattatctcaagtacaacgactccaaagctaaaaacatcagattttattgagaaagatccatgcgctgcatatt |
5524143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 5482736 - 5483029
Alignment:
| Q |
16 |
tggagttcactttaaactattatcatcatataaattagttttcattttgaattccttcccatgcagaagatttattgagaccnnnnnnngggatataaga |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||||||| | |||||| || |||| |||||||| |||||||| | |
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|
| T |
5482736 |
tggagttcactttaaactattttcatcatatgaattagttttcattttgaatttcctcccatacat--gattcattgagac-aaaaaaagggatatatgg |
5482832 |
T |
|
| Q |
116 |
aaagcaactaaaaaggatacagtgtgtcacaagatagagaaacatatacacttccaaacttacatgaccaagaaggttaaggcgatgtagagggtcacga |
215 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||| | ||||| ||||||||| | |
|
|
| T |
5482833 |
aaagcaactaaaataaatacagtgtatcacaagatagagaaacatatacacttcaaaacttacatggccaagaaggtttaaatgatgtcgagggtcacaa |
5482932 |
T |
|
| Q |
216 |
aatccatgattctttctaccgctaattatctcaagtacaacgactccaaaactataaacatcagattttatggagaaggatccatccgctgcatatt |
312 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| || |||| | ||||||||| |
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|
| T |
5482933 |
aatccgcgattctttctaccgctaattatctcaagtacaacgactccaaagctaaaaacatcagattttattgagaaagacccatgcactgcatatt |
5483029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 140 - 292
Target Start/End: Original strand, 5444466 - 5444618
Alignment:
| Q |
140 |
tgtcacaagatagagaaacatatacacttccaaacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctaccgcta |
239 |
Q |
| |
|
||||| |||||| | ||| ||||| ||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||| ||||||||| |
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|
| T |
5444466 |
tgtcataagataaaaaaagatataaacttcaaaacttacatgaccaagaaggtttagacgatgaagagggtcacgaaatccgcgattcttcctaccgcta |
5444565 |
T |
|
| Q |
240 |
attatctcaagtacaacgactccaaaactataaacatcagattttatggagaa |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
5444566 |
attatctcaagtacaacgactccaaaactaaaaacatcagattttattgagaa |
5444618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 138 - 292
Target Start/End: Original strand, 5452988 - 5453142
Alignment:
| Q |
138 |
tgtgtcacaagatagagaaacatatacacttccaaacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctaccgc |
237 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||| ||||||||||||||||||||||| | |||| |||||||||| |||||| ||||||| ||||||| |
|
|
| T |
5452988 |
tgtgtcataagatagaaaaacatataaacttcaaaacttacatgaccaagaaggtttcgatgatgcagagggtcacaaaatccgcgattcttcctaccgc |
5453087 |
T |
|
| Q |
238 |
taattatctcaagtacaacgactccaaaactataaacatcagattttatggagaa |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
5453088 |
taattatctcaagtacaacgactccaaaactaaaaacatcagattttattgagaa |
5453142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 142 - 312
Target Start/End: Complemental strand, 5856033 - 5855863
Alignment:
| Q |
142 |
tcacaagatagagaaacatatacacttccaaacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctaccgctaat |
241 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||| ||||||||||| || |||||| ||||||||| |||||| |||||| ||||||| || |
|
|
| T |
5856033 |
tcacaagatagagaaacatatacactccaaaacttacatgcccaagaaggtttagacgatgttgagggtcacaaaatccgctattcttcttaccgctgat |
5855934 |
T |
|
| Q |
242 |
tatctcaagtacaacgactccaaaactataaacatcagattttatggagaaggatccatccgctgcatatt |
312 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||||||||||||| ||||| ||||||| | ||||||||| |
|
|
| T |
5855933 |
tatctcaagtacaacgactccgaagctaaaaacatcagattttattgagaaagatccatgcactgcatatt |
5855863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 136 - 300
Target Start/End: Complemental strand, 5850850 - 5850686
Alignment:
| Q |
136 |
agtgtgtcacaagatagagaaacatatacacttccaaacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctacc |
235 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| |||||||||||||||||||||| || || ||||||||| ||||||| ||||||| ||||| |
|
|
| T |
5850850 |
agtgtgtggcaagatagaggaacatatacacttcataacttacatgaccaagaaggtttagattgtgcagagggtcagaaaatccacgattcttcctacc |
5850751 |
T |
|
| Q |
236 |
gctaattatctcaagtacaacgactccaaaactataaacatcagattttatggagaaggatccat |
300 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||| |||||||||| ||||| ||||| ||||||| |
|
|
| T |
5850750 |
gctaattatctcaagtacgacgactccgaaactaaaaacatcagactttattgagaaagatccat |
5850686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 144 - 312
Target Start/End: Complemental strand, 5804306 - 5804138
Alignment:
| Q |
144 |
acaagatagagaaacatatacacttccaaacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctaccgctaatta |
243 |
Q |
| |
|
|||||||||| || ||||| ||||| ||||||||||||||||||||||| || |||| |||| ||| |||||| ||||||| ||||||||||||| |
|
|
| T |
5804306 |
acaagatagaagaatatataaacttcaaaacttacatgaccaagaaggtttagatgatgctgaggatcagaaaatccgcgattcttcctaccgctaatta |
5804207 |
T |
|
| Q |
244 |
tctcaagtacaacgactccaaaactataaacatcagattttatggagaaggatccatccgctgcatatt |
312 |
Q |
| |
|
||||||||||||||||||| || ||| |||||||||||||||| ||||| ||||||| | ||||||||| |
|
|
| T |
5804206 |
tctcaagtacaacgactccgaagctaaaaacatcagattttatagagaaagatccatgcactgcatatt |
5804138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 156 - 300
Target Start/End: Original strand, 20341797 - 20341941
Alignment:
| Q |
156 |
aacatatacacttccaaacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctaccgctaattatctcaagtacaa |
255 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||| ||||| || ||||||||||||||| |||||| ||||||| || ||||||||||| ||||| |||| |
|
|
| T |
20341797 |
aacaaatacacttcaaaacttacataaccaaggaggtttagatgatgtagagggtcacaaaatccgcgattcttcctgccgctaattatttcaagcacaa |
20341896 |
T |
|
| Q |
256 |
cgactccaaaactataaacatcagattttatggagaaggatccat |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||| ||||||| |
|
|
| T |
20341897 |
cgactccaaaactaaaaacatcagattttattgagaatgatccat |
20341941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 171 - 292
Target Start/End: Complemental strand, 5830035 - 5829914
Alignment:
| Q |
171 |
aaacttacatgaccaagaaggttaaggcgatgtagagggtcacgaaatccatgattctttctaccgctaattatctcaagtacaacgactccaaaactat |
270 |
Q |
| |
|
||||||||||| ||||||||||| || |||| |||| |||| ||||||| ||||||| | |||||||| |||||||||||||| |||||||| ||| |
|
|
| T |
5830035 |
aaacttacatggccaagaaggtttagattatgttgaggatcacaaaatccacgattcttcgtgccgctaatgatctcaagtacaacaactccaaagctaa |
5829936 |
T |
|
| Q |
271 |
aaacatcagattttatggagaa |
292 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
5829935 |
aaacatcagattttattgagaa |
5829914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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