View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17842_high_16 (Length: 251)
Name: NF17842_high_16
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17842_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 10072409 - 10072189
Alignment:
| Q |
15 |
tatatatttatttgtgcacaacaaagtttgcactttgcataagccnnnnnnntgaaccaaatgagttacaacagagttagcagcaccagcagtagcagtg |
114 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10072409 |
tatatatttatttgtacacaacaaagtttgcactttgcataagccaaaaaaatgaaccaaatgagttacaacagagttagcagcaccagcagtagcagtg |
10072310 |
T |
|
| Q |
115 |
gtaaaggatcatcattttaccatggaaaatgcagaggatttaggctaaacctcacaagactttacttttcgcggctacgcaaaagagtcaacttcttcct |
214 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10072309 |
gtagaggatcatcattttaccatggaaaatgcagaggatttaggctaaacctcacaagactttacttttcgcggctacgcaaaagagtcaacttcttcct |
10072210 |
T |
|
| Q |
215 |
cggaatctttgataagttgaa |
235 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
10072209 |
cagaatctttgataagttgaa |
10072189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University