View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17842_high_18 (Length: 238)
Name: NF17842_high_18
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17842_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 28749210 - 28749008
Alignment:
| Q |
19 |
gataatgtattcttttggtagttttctaattgtattctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28749210 |
gataatgtattcttttggtagttttctaattgtattctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttg |
28749111 |
T |
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| Q |
119 |
tgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagacataagagcacaacctgatgatccaaatgctcctctcccacctac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28749110 |
tgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagatataagagcacaacctgatgatccaaatgctcctttcccacctac |
28749011 |
T |
|
| Q |
219 |
aat |
221 |
Q |
| |
|
||| |
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|
| T |
28749010 |
aat |
28749008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 221
Target Start/End: Complemental strand, 28753223 - 28753021
Alignment:
| Q |
19 |
gataatgtattcttttggtagttttctaattgtattctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28753223 |
gataatgtattcttttggtagttttctaattgtattctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttg |
28753124 |
T |
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| Q |
119 |
tgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagacataagagcacaacctgatgatccaaatgctcctctcccacctac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28753123 |
tgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagatataagagcacaacctgatgatccaaatgctcctttcccacctac |
28753024 |
T |
|
| Q |
219 |
aat |
221 |
Q |
| |
|
||| |
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|
| T |
28753023 |
aat |
28753021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 28739259 - 28739059
Alignment:
| Q |
19 |
gataatgtattcttttggtagttttctaattgtattctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttg |
118 |
Q |
| |
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||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28739259 |
gataatgtatttctttggtcttttcctaattgtattctttttaaatcacaggttttcatatccatagcaatgatccttggtgatggtctatacaactttg |
28739160 |
T |
|
| Q |
119 |
tgaaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagacataagagcacaacctgatgatccaaatgctcctctcccacctac |
218 |
Q |
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||||||||||| ||||||||||| ||||| || | || |||||||| |||||||||| | ||||| | || ||||||||||||||||||||| |||||| |
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| T |
28739159 |
tgaaagttcttagcacaactcttataggtatgtacaagcaatggaacaaaaaagacaaaggagcagagtctaatgatccaaatgctcctctccaacctac |
28739060 |
T |
|
| Q |
219 |
a |
219 |
Q |
| |
|
| |
|
|
| T |
28739059 |
a |
28739059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 39943688 - 39943886
Alignment:
| Q |
21 |
taatgtattcttttggtagttttctaattgtattctttttaaatcacaggttttcatagccatagcaatgatccttggtgatggtctatacaactttgtg |
120 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
39943688 |
taatgtattcttttggtatttttctaattgtattctctttaaactacaggttttcataggcatagcaatgattcttggtgatggtctatacaactttgtg |
39943787 |
T |
|
| Q |
121 |
aaagttcttggcacaactcttttaggtttgaaaaaacaatggaagaaaaaagacataagagcacaacctgatgatccaaatgctcctctcccacctaca |
219 |
Q |
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||||||||||||||||||||| |||||||| | ||||||| |||||||||||||| | ||||||| |||| ||||||||||||||||||||||||||| |
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| T |
39943788 |
aaagttcttggcacaactcttataggtttgtataaacaattgaagaaaaaagacaaaggagcacagtctgaggatccaaatgctcctctcccacctaca |
39943886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 29246126 - 29246074
Alignment:
| Q |
67 |
caggttttcatagccatagcaatgatccttggtgatggtctatacaactttgt |
119 |
Q |
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||||| || ||||||||||| ||||||||||| |||||||||||||||||||| |
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|
| T |
29246126 |
caggtatttatagccatagccatgatccttggagatggtctatacaactttgt |
29246074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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