View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17842_high_4 (Length: 612)
Name: NF17842_high_4
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17842_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 584; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Original strand, 2430940 - 2431535
Alignment:
| Q |
1 |
aaaaaatctgtacttgtcttgtgatcctcacatgagaatccgcatgaccaaagacactactgcagaacttggtgctctcacccctggttttgtatgtcat |
100 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2430940 |
aaaaaatctgtacttgtcttgtgatccttacatgagaatccgcatgaccaaagacactactgcagaacttggtgctctcacccctggttttgtatgtcat |
2431039 |
T |
|
| Q |
101 |
gctctctctttcatcaattattattcatcaatttattttaacatttcaaaggccttatttcgaaaggcaaagtatatattatgtactataaaattagagt |
200 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2431040 |
gctctctctttcatcaattattatttatcaatttattttaacatttcaaaggccttatttcgaaaggcaaagtatatattatgtactataaaattagagt |
2431139 |
T |
|
| Q |
201 |
ttaacatggtctatgtaaatcagttttacgcttgcgtctaatgagaatcaactattttacactgagtttcatattattgatatcaagatgcagttaaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2431140 |
ttaacatggtctatgtaaatcagttttacgcttgcgtctaatgagaatcaactattttacactgagtttcatattattgatatcaagatgcagttaaaaa |
2431239 |
T |
|
| Q |
301 |
agtagggtaacttggacaaaatagtaaactctcattagatatcagtataagctaacacagttgattttgataaaggaatgtattgagaatttatttttta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2431240 |
agtagggtaacttggacaaaatagtaaactctcattagatatcagtataagctaacacagttgattttgataaaggaatgtattgagaatttatttttta |
2431339 |
T |
|
| Q |
401 |
tcaaagaataaatgtagttactaactgacgagtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaa |
500 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2431340 |
tcatagaataaatgtagttactaactgacgagtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaa |
2431439 |
T |
|
| Q |
501 |
agatgatttagtttggggtattactaactgggaagagtatagtttggtccctacaactggaatgtacaaaattgagcacaatgatgtcccactttc |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2431440 |
agatgatttagtttggggtattactaactgggaagagtatagtttggtccctacaactggaatgtacaaaattgagcacaatgatgtcccactttc |
2431535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 390 - 596
Target Start/End: Original strand, 2434714 - 2434920
Alignment:
| Q |
390 |
tttattttttatcaaagaataaatgtagttactaactgacgagtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatcca |
489 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2434714 |
tttattttttatcatagaataaatatagctactaactgacgagtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatcca |
2434813 |
T |
|
| Q |
490 |
gattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctacaactggaatgtacaaaattgagcacaatgatgtcc |
589 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||||| |||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| |
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| T |
2434814 |
gattataagaaagatgattcagtttggagtcttactaaatgggaagagtatagtttggttcctacaactggaattttcaaaattgagcacaatgatgtcc |
2434913 |
T |
|
| Q |
590 |
cactttc |
596 |
Q |
| |
|
||||||| |
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|
| T |
2434914 |
cactttc |
2434920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 419 - 552
Target Start/End: Original strand, 2428379 - 2428512
Alignment:
| Q |
419 |
tactaactgacgagtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttgggg |
518 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2428379 |
tactaactgatgagtaattgcagccattgacaggattaggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttgggg |
2428478 |
T |
|
| Q |
519 |
tattactaactgggaagagtatagtttggtccct |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
2428479 |
tattactaactgggaagagtatagtttggtccct |
2428512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 419 - 552
Target Start/End: Original strand, 1458672 - 1458805
Alignment:
| Q |
419 |
tactaactgacgagtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttgggg |
518 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1458672 |
tactaactgatgagtaattgcagccattgacaggattaggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttgggg |
1458771 |
T |
|
| Q |
519 |
tattactaactgggaagagtatagtttggtccct |
552 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||| |
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|
| T |
1458772 |
aatgactaaatgggaagagtatagtttggtccct |
1458805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 2434521 - 2434645
Alignment:
| Q |
2 |
aaaaatctgtacttgtcttgtgatcctcacatgagaatccgcatgaccaaagacactactgcagaacttggtgctctcacccctggttttgtatgtcatg |
101 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
2434521 |
aaaaatctgtacttgtcttgtgatccttacatgagactcctgatgaccaaggacactactgcaggacttggtgctctcacccctggttctgtatgtcatg |
2434620 |
T |
|
| Q |
102 |
ctctct-ctttcatcaattattatt |
125 |
Q |
| |
|
|||||| |||||||||||||||||| |
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| T |
2434621 |
ctctctcctttcatcaattattatt |
2434645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 1457979 - 1458092
Alignment:
| Q |
1 |
aaaaaatctgtacttgtcttgtgatcctcacatgagaatccgcatgaccaaagacactactgcagaacttggtgctctcacccctggttttgtatgtcat |
100 |
Q |
| |
|
||||||||| ||||| || ||||||||| || ||||||| |||| |||| ||||||| ||||| |||||||| |||||||||||||| |||||||||| |
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|
| T |
1457979 |
aaaaaatctctacttatcctgtgatccttacctgagaattttcatggccaaggacactattgcaggacttggtggtctcacccctggttctgtatgtcat |
1458078 |
T |
|
| Q |
101 |
gctctctctttcat |
114 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1458079 |
gctctctctttcat |
1458092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 2427687 - 2427799
Alignment:
| Q |
2 |
aaaaatctgtacttgtcttgtgatcctcacatgagaatccgcatgaccaaagacactactgcagaacttggtgctctcacccctggttttgtatgtcatg |
101 |
Q |
| |
|
|||||||| ||||| || ||||||||| || ||||||| |||| |||| ||||||| ||||| |||||||| |||||||||||||| ||||||||||| |
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|
| T |
2427687 |
aaaaatctctacttatcctgtgatccttacctgagaattttcatggccaaggacactattgcaggacttggtggtctcacccctggttctgtatgtcatg |
2427786 |
T |
|
| Q |
102 |
ctctctctttcat |
114 |
Q |
| |
|
||||||||||||| |
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|
| T |
2427787 |
ctctctctttcat |
2427799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 449 - 596
Target Start/End: Complemental strand, 2498215 - 2498065
Alignment:
| Q |
449 |
caggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggt |
548 |
Q |
| |
|
|||||||||| ||||||||||| | ||||| |||||||| ||||||||| ||| ||||||||||||||| | ||| ||||||||||| || ||||| |
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|
| T |
2498215 |
caggttttggggtgtctaaagtccttgaatcaggacatcctgattataaggaaggtgatttagtttggggattctgtaaatgggaagagtacagcttggt |
2498116 |
T |
|
| Q |
549 |
ccctacaactggaa---tgtacaaaattgagcacaatgatgtcccactttc |
596 |
Q |
| |
|
|||| || || || | | |||||||||||||| ||||||||||||||| |
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|
| T |
2498115 |
cccttcatctcaaatacttttcaaaattgagcacactgatgtcccactttc |
2498065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 432 - 552
Target Start/End: Complemental strand, 2507165 - 2507045
Alignment:
| Q |
432 |
gtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggtattactaactgg |
531 |
Q |
| |
|
|||||||||||| | || |||| ||| |||||||||||||| ||||||||||| |||||||||| ||| |||| |||| ||||| || ||||| ||| |
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|
| T |
2507165 |
gtaattgcagccgttaactggttatggtgtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatatagtgtgggggataactaattgg |
2507066 |
T |
|
| Q |
532 |
gaagagtatagtttggtccct |
552 |
Q |
| |
|
|||||||| || ||| ||||| |
|
|
| T |
2507065 |
gaagagtacagcttgatccct |
2507045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 460 - 552
Target Start/End: Complemental strand, 2518014 - 2517922
Alignment:
| Q |
460 |
gtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccct |
552 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||| ||||||||| ||||| ||||||| ||||||||||| || ||| ||||| |
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|
| T |
2518014 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccct |
2517922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 432 - 552
Target Start/End: Complemental strand, 2513825 - 2513705
Alignment:
| Q |
432 |
gtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttggggtattactaactgg |
531 |
Q |
| |
|
|||||||||||| | || |||| ||| |||||||||||| ||||||||||||| ||||||||| ||| |||| | || ||||| || ||||| ||| |
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|
| T |
2513825 |
gtaattgcagccgataactggttatggtgtgtctaaagttctagaatctggacacaaagattataaagaaggtgatatcgtgtgggggataactaattgg |
2513726 |
T |
|
| Q |
532 |
gaagagtatagtttggtccct |
552 |
Q |
| |
|
|||||||| || ||| ||||| |
|
|
| T |
2513725 |
gaagagtacagcttgatccct |
2513705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 363
Target Start/End: Original strand, 2434643 - 2434672
Alignment:
| Q |
334 |
attagatatcagtataagctaacacagttg |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2434643 |
attagatatcagtataagctaacacagttg |
2434672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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