View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17842_low_1 (Length: 912)
Name: NF17842_low_1
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17842_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 635; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 18 - 894
Target Start/End: Complemental strand, 28670027 - 28669167
Alignment:
| Q |
18 |
catgcaggcccaagaatttcagttgcaaccttttttagaacacaacatgattactcacatgagggtatggaaaaagtgataggaccaataaaggaactgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28670027 |
catgcaggcccaagaatttcagttgcaaccttttttagaacacaacatgattactcacatgagggtatggaaaaagtgataggaccaataaaggaattgt |
28669928 |
T |
|
| Q |
118 |
tatctaaagaaaattcaccaatatacagagatacttctttgaaagagtatttggcatatcgttttgcaaacggccttggagcttctgcactatcaccctt |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
28669927 |
tatctaaagaaaatccaccaatatacagagatacttctttgaaagagtatttggcatatcgttttgcaaatggccttggagcttctgcactatcaccctt |
28669828 |
T |
|
| Q |
218 |
caagttgtcacacaaagaagcaacttagtgttcatttcattttcaataaatatttattgttaagctattgtagttcgtgtaatatattgttacccttgta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28669827 |
caagttgtcacacaaagaagcaacttagtgttcatttcattttcaataaatatttattgttaagctattgtagtccgtgtaatatattgttacccttgta |
28669728 |
T |
|
| Q |
318 |
aattaatttaatta-nnnnnnnaaatttattagattgttttgaaaaacttgttatagtacatgtatcaggtgagtagctnnnnnnnctaatcccttattg |
416 |
Q |
| |
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|||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28669727 |
aattaacttaattattttttttaaatttattagattgttttgaaaaaattgttatagtacatgtatcaggtgagtagctaaaaaaactaatcccttattg |
28669628 |
T |
|
| Q |
417 |
gataatgaagatacagaagtcaacactatcagttgactattattacttgcagtctaagcaactagtcgtagagtaattagctactctataacatatgata |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||| |
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|
| T |
28669627 |
gataatgaagatacagaagtcaacactatcagctgactattattacttgcagtctaagcaactagtcgcagagtaattagctacactataacacatgata |
28669528 |
T |
|
| Q |
517 |
gcttaatgtacacaagcattctgtctatatatacttgctgtaatcactgattcattaatgacaattcatatcttcattcatttctcaagtttcctaatat |
616 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
28669527 |
gcttaatgtagacaagcattctgtctatatatacttgctgtaatcactgattcattaatgataattcatatcttcattcatttctcaagtttcctaatat |
28669428 |
T |
|
| Q |
617 |
ggtatcaagagccttttcccttgcgtgaaaggttgttacgatccataaccgtttttccctaaccgnnnnnnncccgttatgtattcctctttgatcatct |
716 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
28669427 |
ggtatcaagaaccttttcccttgcgtgaaagattgttactatccataaccgttttt-----------------ccgttgtgtattcctctttgatcatct |
28669345 |
T |
|
| Q |
717 |
tcttcaatcgttttcctcatatttcgttgttgatcttcatgattctttgcattttgattgcagattctgcaacttgattctcgnnnnnnnnnnnnnnnnn |
816 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28669344 |
tcttcaatcgttttcctcatatttcgttgttgatcttcatgattctttgcattttgattgcagattctgcaacttgattctcgtttttcttgttattctg |
28669245 |
T |
|
| Q |
817 |
nnnnnnattcgattgaattctacttcaattgctcattttctcttcgttttctcgaattcagttcttattaatataatt |
894 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28669244 |
ttttttattcgattgaattctacttcaattgctcattttctcttcgttttctcgaattcagttcttattactataatt |
28669167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 28647922 - 28647715
Alignment:
| Q |
18 |
catgcaggcccaagaatttcagttgcaaccttttttagaacacaacatgattactcacatgagggtatggaaaaagtgataggaccaataaaggaactgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | || | |||||| || ||||||||| |||||||| |||||||| | |
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|
| T |
28647922 |
catgcaggcccaagaatttcagttgcaaccttttttagaacacaacatgatcattctcctgagggcataccaaaagtgattggaccaatcaaggaacttt |
28647823 |
T |
|
| Q |
118 |
tatctaaagaaaattcaccaatatacagagatacttctttgaaagagtatttggcatatcgttttgcaaacggccttggagcttctgcactatcaccctt |
217 |
Q |
| |
|
||||||||||||| | |||||||||| |||||| |||||||||||||| ||| ||||||||| |||| ||| |||||||||||||||||||||| || |
|
|
| T |
28647822 |
tatctaaagaaaaccctccaatatacaaagatacatctttgaaagagtacttgaaatatcgtttggcaagcgggtttggagcttctgcactatcaccttt |
28647723 |
T |
|
| Q |
218 |
caagttgt |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
28647722 |
caagttgt |
28647715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 28639180 - 28638973
Alignment:
| Q |
18 |
catgcaggcccaagaatttcagttgcaaccttttttagaacacaacatgattactcacatgagggtatggaaaaagtgataggaccaataaaggaactgt |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | |||||||||||||||||| |||| | |||||| || |||| |||| |||||||| |||||||| | |
|
|
| T |
28639180 |
catgcaggtccaagaatttcagttgcaaccctctttagaacacaacatgatcactctcctgagggcataccaaaattgattggaccaatcaaggaacttt |
28639081 |
T |
|
| Q |
118 |
tatctaaagaaaattcaccaatatacagagatacttctttgaaagagtatttggcatatcgttttgcaaacggccttggagcttctgcactatcaccctt |
217 |
Q |
| |
|
||||| ||||||| |||||||||||| ||| ||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||||||||||| || || |
|
|
| T |
28639080 |
tatctgaagaaaacccaccaatatacaaagacacttctttgaaagagtacttgaaatatcgtttggcaagcggttttggagcttctgcactatccccttt |
28638981 |
T |
|
| Q |
218 |
caagttgt |
225 |
Q |
| |
|
|||||||| |
|
|
| T |
28638980 |
caagttgt |
28638973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 28673029 - 28672910
Alignment:
| Q |
89 |
aaaagtgataggaccaataaaggaactgttatctaaagaaaattcaccaatatacagagatacttctttgaaagagtatttggcatatcgttttgcaaac |
188 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |||||| |||||||| ||||| |
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|
| T |
28673029 |
aaaagtgattggtccaatcaaggaactgttatctaaagaaaatctaccaatatatagagacacttctttgaaagagttcttggcacatcgttttacaaac |
28672930 |
T |
|
| Q |
189 |
ggccttggagcttctgcact |
208 |
Q |
| |
|
||| ||||| ||||||||| |
|
|
| T |
28672929 |
ggcattggattttctgcact |
28672910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 411 - 670
Target Start/End: Original strand, 11921877 - 11922132
Alignment:
| Q |
411 |
ttattggataatgaagatacagaagtcaacactatcagttgactattattacttgcagtctaagcaactagtcgtagagtaattagctactctataacat |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| |||||||| ||||||||||| ||| |||| || |
|
|
| T |
11921877 |
ttattggataatgaagatacagaagtcaacactatcagttgactattgttacttacaacttaataaactagtcttagagtaattacatacattatagcac |
11921976 |
T |
|
| Q |
511 |
atgatagcttaatgtacacaagcattctgtctatatatacttgctgtaatcactgattcattaatgacaat--tcatatcttcattcatttctcaagttt |
608 |
Q |
| |
|
|||||||||||||||||||| |||| | | |||||||| ||||| |||| ||||| ||||| ||| || | |||||||||||||||||||| |
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|
| T |
11921977 |
atgatagcttaatgtacacatacatt-tcgatgtatatact---tgtaacaactg-ttcatcaatgagaataatc-ccttttcattcatttctcaagttt |
11922070 |
T |
|
| Q |
609 |
cctaatatggtatcaagagccttttcccttgcgtgaaaggttgttacgatccataaccgttt |
670 |
Q |
| |
|
| ||||||||||||| | ||||||||| | || ||||||||||||| |||| |||||||| |
|
|
| T |
11922071 |
cataatatggtatcacgtgccttttccatctcgagaaaggttgttacaatccccaaccgttt |
11922132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 412 - 495
Target Start/End: Original strand, 11927081 - 11927163
Alignment:
| Q |
412 |
tattggataatgaagatacagaagtcaacactatcagttgactattattacttgcagtctaagcaactagtcgtagagtaatta |
495 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| |||||||||||||||||| || ||||||||||||| ||||||||||| |
|
|
| T |
11927081 |
tattggataatgtagatacaaaagtcaacactattagttgactattattacttacaacctaagcaactagt-ttagagtaatta |
11927163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 458 - 559
Target Start/End: Complemental strand, 25633531 - 25633426
Alignment:
| Q |
458 |
attacttgcagtctaagcaactag-tcgtagagtaattagctactctataacatatgatagcttaat----gtacacaagcattctgtctatatatactt |
552 |
Q |
| |
|
||||||||||| |||||||||||| || |||||| |||||||| ||||| ||||||||||||||| |||||||| ||| ||||||||||||||| |
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|
| T |
25633531 |
attacttgcagcctaagcaactagatctaagagtacttagctacactatagtatatgatagcttaattaatgtacacaaacata-tgtctatatatactt |
25633433 |
T |
|
| Q |
553 |
gctgtaa |
559 |
Q |
| |
|
||||||| |
|
|
| T |
25633432 |
gctgtaa |
25633426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 412 - 483
Target Start/End: Complemental strand, 8072807 - 8072735
Alignment:
| Q |
412 |
tattggataatgaagatacagaa-gtcaacactatcagttgactattattacttgcagtctaagcaactagtc |
483 |
Q |
| |
|
|||||| |||| |||||| |||| ||||||||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
8072807 |
tattggttaatcaagatatagaaagtcaacactatcagttgactaacatgacttgcagcctaagcaactagtc |
8072735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 670
Target Start/End: Original strand, 30498314 - 30498379
Alignment:
| Q |
605 |
gtttcctaatatggtatcaagagccttttcccttgcgtgaaaggttgttacgatccataaccgttt |
670 |
Q |
| |
|
||||||||||||||||||| | ||||| |||| || ||||||||||| ||||||||||| |||| |
|
|
| T |
30498314 |
gtttcctaatatggtatcacgcgccttctcccacgcaggaaaggttgtttcgatccataacggttt |
30498379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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