View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17842_low_11 (Length: 455)
Name: NF17842_low_11
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17842_low_11 |
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| [»] scaffold0197 (1 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 6 - 435
Target Start/End: Original strand, 22820 - 23249
Alignment:
| Q |
6 |
atcatcatcgtcaacatcaaacaaactagaaagcaaatcatgaggcataacaccaatctcacaaatctccatacttttttcatcaacctcccacaaattg |
105 |
Q |
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|||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22820 |
atcatcctcatcaccatcaaacaaactagaaagcaaatcatgaggcataacaccaatctcacaaatctccatacttttttcatcaacctcccacaaattg |
22919 |
T |
|
| Q |
106 |
aaactagacccacttggtgaattacaaacaccagctaaaacaagcctttccctacaagcaatcaagaaagagaacacaaccccagaaggtctaacaatcc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22920 |
aaactagacccacttggtgaattacaaacaccagctaaaacaagcctttccctacaagcaatcaagaaagaaaacacaaccccagaaggtctaacaatcc |
23019 |
T |
|
| Q |
206 |
taacatcactccaaacacgaagcttcaaatcaaaggaagaaacaaaacatgaatatatcccaaacacaaaaaacttccctttgaccaaagcagatgaaag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23020 |
taacatcactccaaacacgaagcttcaaatcaaaggaagaaacaaaacatgaatatatcccaaacacaaaaaacttccctttgaacaaagcagatgaaag |
23119 |
T |
|
| Q |
306 |
tgaagatgatgagtttccagatcgaaaatcaacaggaagaggaggagctaaatcccaagaacccaaaagagggtcatagatttcaacatctaaacgatct |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23120 |
tgaagatgatgagtttccagatcgaaaatcaacaggaagaggaggagctaaatcccaagaacccaaaagagggtcatagatttcaacatctaaacgatct |
23219 |
T |
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| Q |
406 |
tctatatcaacaaggtgaccaataaaccta |
435 |
Q |
| |
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|||||||||||||||| ||||||||||||| |
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| T |
23220 |
tctatatcaacaaggttaccaataaaccta |
23249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 6 - 435
Target Start/End: Original strand, 21309205 - 21309634
Alignment:
| Q |
6 |
atcatcatcgtcaacatcaaacaaactagaaagcaaatcatgaggcataacaccaatctcacaaatctccatacttttttcatcaacctcccacaaattg |
105 |
Q |
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|||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21309205 |
atcatcctcatcaccatcaaacaaactagaaagcaaatcatgaggcataacaccaatctcacaaatctccatacttttttcatcaacctcccacaaattg |
21309304 |
T |
|
| Q |
106 |
aaactagacccacttggtgaattacaaacaccagctaaaacaagcctttccctacaagcaatcaagaaagagaacacaaccccagaaggtctaacaatcc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21309305 |
aaactagacccacttggtgaattacaaacaccagctaaaacaagcctttccctacaagcaatcaagaaagaaaacacaaccccagaaggtctaacaatcc |
21309404 |
T |
|
| Q |
206 |
taacatcactccaaacacgaagcttcaaatcaaaggaagaaacaaaacatgaatatatcccaaacacaaaaaacttccctttgaccaaagcagatgaaag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21309405 |
taacatcactccaaacacgaagcttcaaatcaaaggaagaaacaaaacatgaatatatcccaaacacaaaaaacttccctttgaacaaagcagatgaaag |
21309504 |
T |
|
| Q |
306 |
tgaagatgatgagtttccagatcgaaaatcaacaggaagaggaggagctaaatcccaagaacccaaaagagggtcatagatttcaacatctaaacgatct |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21309505 |
tgaagatgatgagtttccagatcgaaaatcaacaggaagaggaggagctaaatcccaagaacccaaaagagggtcatagatttcaacatctaaacgatct |
21309604 |
T |
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| Q |
406 |
tctatatcaacaaggtgaccaataaaccta |
435 |
Q |
| |
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|||||||||||||||| ||||||||||||| |
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| T |
21309605 |
tctatatcaacaaggttaccaataaaccta |
21309634 |
T |
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