View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17842_low_12 (Length: 441)
Name: NF17842_low_12
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17842_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 20 - 432
Target Start/End: Original strand, 10279765 - 10280177
Alignment:
| Q |
20 |
cattagtcctcccaatttcggaaaaactcaagtatgtgaaaaatttagttgagaggaagattttgaagaagaagatcgaaccatacatgccaaatttcaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10279765 |
cattagtcctcccaatttcggaaaaactcaagtatgtgaaaaatttagttgagaggaagattttgaagaagaagatcgaaccatacatgccaaatttcaa |
10279864 |
T |
|
| Q |
120 |
gttagcgttcgatcaattttgcatgcatacgggcggtagagcagttcttgatcggatgcaaaagagtcttgagcttgatgattttcatatggagccttca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10279865 |
gttagcgttcgatcaattttgcatgcatacgggcggtagagcagttcttgatcggatgcaaaagagtcttgagcttgatgattttcatatggagccttca |
10279964 |
T |
|
| Q |
220 |
agaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaaggggagagttaaaaagggacataaga |
319 |
Q |
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| T |
10279965 |
agaatgacactatatagatatggtaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaaggggagagttaaaaagggacataaga |
10280064 |
T |
|
| Q |
320 |
tttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcctaaatcattgaaaaatgcttggatgga |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10280065 |
tttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcctaaatcattgaaaaatgcttggatgga |
10280164 |
T |
|
| Q |
420 |
tgagattgatgat |
432 |
Q |
| |
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| T |
10280165 |
tgagattgatgat |
10280177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 211 - 393
Target Start/End: Complemental strand, 27776601 - 27776419
Alignment:
| Q |
211 |
gagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaaggggagagttaaaaagg |
310 |
Q |
| |
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|||||||||||||||||||| ||||||||||| || || ||| |||||||||||||||| ||| ||||||||||||||||||| || | | || | |
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| T |
27776601 |
gagccttcaagaatgacactttatagatatggaaatacttcaagtagttctgtttggtatgttttggcttattgtgaagctaagggaaggataaggaaag |
27776502 |
T |
|
| Q |
311 |
gacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcct |
393 |
Q |
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| ||| |||||||||||| || ||||| ||||||||||| ||| ||||||||||||| |||||| | ||||||||||||| |
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| T |
27776501 |
gtgataggatttggcaaattgcatttgggtctggatttaaatgtaacactgctgtttggtgtgctttaaggaatgttgatcct |
27776419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 198 - 392
Target Start/End: Complemental strand, 19742975 - 19742781
Alignment:
| Q |
198 |
tgattttcatatggagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaagggg |
297 |
Q |
| |
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||||||||| | |||||||||| |||||||| ||||||||||| ||||| ||| ||||||||||||||||| ||| | |||||||||||||| || |
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| T |
19742975 |
tgattttcaattagagccttcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaagga |
19742876 |
T |
|
| Q |
298 |
agagttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcc |
392 |
Q |
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||| | | ||| || ||| |||||||||||| || ||||| |||||||||||| ||| ||||||||||||| ||| || | |||||||||||| |
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| T |
19742875 |
agaataagaaaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttggtgtgcattaaggaatgttgatcc |
19742781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 198 - 392
Target Start/End: Original strand, 19797113 - 19797307
Alignment:
| Q |
198 |
tgattttcatatggagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaagggg |
297 |
Q |
| |
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||||||||| | |||||||||| |||||||| ||||||||||| ||||| ||| ||||||||||||||||| ||| | |||||||||||||| || |
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| T |
19797113 |
tgattttcaattagagccttcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaagga |
19797212 |
T |
|
| Q |
298 |
agagttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcc |
392 |
Q |
| |
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||| | | ||| || ||| |||||||||||| || ||||| |||||||||||| ||| ||||||||||||| ||| || | |||||||||||| |
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| T |
19797213 |
agaataagaaaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactgctgtttggtgtgcattaaggaatgttgatcc |
19797307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 198 - 392
Target Start/End: Complemental strand, 19539932 - 19539738
Alignment:
| Q |
198 |
tgattttcatatggagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaagggg |
297 |
Q |
| |
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||||||||| | |||||||||| |||||||| ||||||||||| ||||| ||| |||| |||||||||||| ||| | |||||||||||||| || |
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| T |
19539932 |
tgattttcaattagagccttcaaagatgacactttatagatatggtaacacttcaagtagttttgtttggtatgagttggcatattgtgaagctaaagga |
19539833 |
T |
|
| Q |
298 |
agagttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcc |
392 |
Q |
| |
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||| | | ||| || ||| |||||||||||| || ||||| ||| |||||||| ||| ||||||||||||| ||| || |||||||||||||| |
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| T |
19539832 |
agaataagaaaaggtgataggatttggcaaattgcatttgggtctagatttaagtgtaacactgctgtttggtgtgcattaaagaatgttgatcc |
19539738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 198 - 392
Target Start/End: Complemental strand, 19671855 - 19671661
Alignment:
| Q |
198 |
tgattttcatatggagccttcaagaatgacactatatagatatggcaacacatcatcaagttctgtttggtatgaattgtcttattgtgaagctaagggg |
297 |
Q |
| |
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||||||||| | |||||||||| |||||||| ||||||||||| ||||| ||| ||||||||||||||||| ||| | |||||||||||||| || |
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| T |
19671855 |
tgattttcaattagagccttcaaagatgacactttatagatatggtaacacttcaagtagttctgtttggtatgagttggcatattgtgaagctaaagga |
19671756 |
T |
|
| Q |
298 |
agagttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctgtttggtatgctttgaagaatgttgatcc |
392 |
Q |
| |
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||||| ||| || ||| |||||||||||| || ||||| |||||||||||| ||| ||| ||||||||| ||| || | |||||||||||| |
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| T |
19671755 |
agagtatgaaaaggtgataggatttggcaaattgcatttgggtctggatttaagtgtaacactcctgtttggtgtgcattaaggaatgttgatcc |
19671661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 382
Target Start/End: Original strand, 15239601 - 15239718
Alignment:
| Q |
265 |
tggtatgaattgtcttattgtgaagctaaggggagagttaaaaagggacataagatttggcaaatggcttttggatctggatttaaggttaatactgctg |
364 |
Q |
| |
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|||||||||||| ||||| ||||||||| ||||| ||||||| || ||| | ||||||||| || ||||| ||||| |||||| ||||| ||||| |
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| T |
15239601 |
tggtatgaattggcttatactgaagctaaagggaggattaaaaaaggtgatagaacttggcaaattgcatttggttctggttttaagtgtaatagtgctg |
15239700 |
T |
|
| Q |
365 |
tttggtatgctttgaaga |
382 |
Q |
| |
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||||| | || ||||||| |
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| T |
15239701 |
tttggaaagcattgaaga |
15239718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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