View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17842_low_13 (Length: 424)
Name: NF17842_low_13
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17842_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 22 - 424
Target Start/End: Original strand, 8870976 - 8871375
Alignment:
| Q |
22 |
tgtgcctttataaagataaataaattcaacaagtttatttattaaaataatattcaccaaatttcttttacaaaataaaatttattaaggagacataatt |
121 |
Q |
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| T |
8870976 |
tgtgcctttataaagataaataaattcaacaagtttatttattaaa-taatattcaccaaatttcttttacaaaataaaatttattaaggagacataatt |
8871074 |
T |
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| Q |
122 |
tatataaaattacatagaactataatcttagagaaaatttaaaacaaaattaatgtataatctgaaaaggg-aaatgataagcagtgtttttaagacatt |
220 |
Q |
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| T |
8871075 |
tatataaaattacatagaactataatcttagagaaaatttacaacaaaattaatgtataatctgaaaagggaaaatgctaagtagtgtttttaagacatt |
8871174 |
T |
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| Q |
221 |
tattaagaagtctaaagaataatttttgtcttaaaattgatacattcaacacattgaaacttgaaattcaagtcagaacaaatgcgaacgaaacgtctaa |
320 |
Q |
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| T |
8871175 |
tattaagaagtctaaagaatgatttttgtcttgaaattgatacattcaacacattgaaacttaaaatccaaatcagaacaattgcgagcgaaacg--taa |
8871272 |
T |
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| Q |
321 |
ccatatatatggatcgcaatagatcaatcaactgaatttctcaattcaccaacgtactaacaaaattaataagcaacacacacaatactaccaactaaca |
420 |
Q |
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| T |
8871273 |
ccatatacactgatcgcaatagatcaatcaactgaatttctcaattcaccaaagtactgac-aaattaataagcaacacacacaatactaccaactaaca |
8871371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 40696119 - 40696183
Alignment:
| Q |
222 |
attaagaagtctaaagaataatttttgtcttaaaattgatacattcaacacattgaaacttgaaa |
286 |
Q |
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| T |
40696119 |
attaagaagcctaaagaagaaattttgtcttaaaattgatacattcgacatattaaaacttgaaa |
40696183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 286
Target Start/End: Complemental strand, 752267 - 752204
Alignment:
| Q |
223 |
ttaagaagtctaaagaataatttttgtcttaaaattgatacattcaacacattgaaacttgaaa |
286 |
Q |
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| T |
752267 |
ttaagaagtctaaagaagaaattttgtcttgggattgatgcattcaacacattgaaacttgaaa |
752204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 23886497 - 23886559
Alignment:
| Q |
213 |
aagacatttattaagaagtctaaagaataatttttgtcttaaaattgatacattcaacacatt |
275 |
Q |
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| T |
23886497 |
aagacacttgttaagaaatctaaagaaaaaattttatcttaaaattgatgcgttcaacacatt |
23886559 |
T |
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