View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17842_low_16 (Length: 341)

Name: NF17842_low_16
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17842_low_16
NF17842_low_16
[»] chr4 (17 HSPs)
chr4 (222-326)||(33379616-33379720)
chr4 (1-123)||(33380714-33380836)
chr4 (162-230)||(33380598-33380666)
chr4 (166-227)||(53261088-53261149)
chr4 (59-120)||(46321439-46321500)
chr4 (163-214)||(30023641-30023692)
chr4 (163-208)||(54223655-54223700)
chr4 (60-124)||(31012121-31012185)
chr4 (167-222)||(6607399-6607453)
chr4 (74-117)||(24425232-24425275)
chr4 (176-219)||(30023489-30023532)
chr4 (163-201)||(41306642-41306680)
chr4 (166-219)||(36273056-36273109)
chr4 (59-120)||(42375094-42375155)
chr4 (59-119)||(31846896-31846956)
chr4 (163-211)||(39336297-39336345)
chr4 (166-226)||(42756285-42756345)
[»] chr6 (9 HSPs)
chr6 (163-222)||(16193825-16193884)
chr6 (168-217)||(2980796-2980845)
chr6 (167-227)||(369519-369579)
chr6 (176-219)||(2543852-2543895)
chr6 (59-123)||(2913929-2913995)
chr6 (176-219)||(11448063-11448106)
chr6 (188-222)||(11448186-11448220)
chr6 (176-222)||(28581735-28581781)
chr6 (63-100)||(11448180-11448217)
[»] chr5 (14 HSPs)
chr5 (163-222)||(12605651-12605710)
chr5 (59-120)||(291181-291242)
chr5 (59-124)||(19417438-19417503)
chr5 (59-119)||(29385390-29385450)
chr5 (176-219)||(896275-896318)
chr5 (59-117)||(2093930-2093988)
chr5 (178-212)||(9177956-9177990)
chr5 (178-219)||(5215681-5215722)
chr5 (63-124)||(7137638-7137699)
chr5 (55-120)||(16439127-16439192)
chr5 (182-227)||(41287997-41288042)
chr5 (56-92)||(896268-896304)
chr5 (176-212)||(25879414-25879450)
chr5 (84-120)||(28819001-28819037)
[»] chr3 (16 HSPs)
chr3 (163-219)||(29081695-29081751)
chr3 (163-214)||(32385369-32385420)
chr3 (163-222)||(48342790-48342849)
chr3 (167-217)||(36738269-36738319)
chr3 (190-226)||(5633181-5633217)
chr3 (178-226)||(36738372-36738420)
chr3 (176-219)||(11512393-11512436)
chr3 (168-219)||(22894000-22894051)
chr3 (59-122)||(29081592-29081655)
chr3 (59-94)||(29081720-29081755)
chr3 (85-120)||(51046092-51046127)
chr3 (163-213)||(28309087-28309137)
chr3 (59-101)||(49159501-49159543)
chr3 (176-212)||(31342020-31342056)
chr3 (167-231)||(31342107-31342170)
chr3 (163-207)||(48342312-48342356)
[»] scaffold1315 (1 HSPs)
scaffold1315 (163-226)||(1812-1875)
[»] scaffold1293 (1 HSPs)
scaffold1293 (163-226)||(196-259)
[»] chr1 (22 HSPs)
chr1 (163-222)||(10449451-10449510)
chr1 (59-124)||(6539659-6539724)
chr1 (167-209)||(28810060-28810102)
chr1 (163-212)||(719087-719136)
chr1 (63-100)||(28739311-28739348)
chr1 (163-227)||(15928072-15928135)
chr1 (55-123)||(44291149-44291217)
chr1 (163-222)||(44801755-44801815)
chr1 (63-123)||(49200059-49200119)
chr1 (190-222)||(49200090-49200122)
chr1 (176-220)||(50754729-50754773)
chr1 (176-219)||(28739422-28739465)
chr1 (163-201)||(44291144-44291182)
chr1 (65-115)||(44381917-44381967)
chr1 (59-119)||(9379811-9379871)
chr1 (59-119)||(9884834-9884894)
chr1 (63-123)||(9884942-9885001)
chr1 (169-213)||(26233794-26233838)
chr1 (63-123)||(32787129-32787189)
chr1 (163-219)||(44938801-44938857)
chr1 (63-123)||(50754825-50754884)
chr1 (188-228)||(50754853-50754893)
[»] scaffold0110 (1 HSPs)
scaffold0110 (166-222)||(26503-26559)
[»] chr8 (5 HSPs)
chr8 (178-226)||(33763457-33763505)
chr8 (166-232)||(45051337-45051402)
chr8 (163-219)||(4531839-4531895)
chr8 (67-123)||(31470845-31470901)
chr8 (59-123)||(37940743-37940807)
[»] chr2 (4 HSPs)
chr2 (168-219)||(7755342-7755393)
chr2 (59-119)||(39819056-39819116)
chr2 (56-87)||(5095749-5095780)
chr2 (56-120)||(32545872-32545936)
[»] chr7 (7 HSPs)
chr7 (163-213)||(32315719-32315769)
chr7 (176-219)||(7211866-7211909)
chr7 (176-219)||(17272705-17272748)
chr7 (163-226)||(29407492-29407555)
chr7 (167-213)||(25099349-25099395)
chr7 (59-123)||(24532795-24532858)
chr7 (53-101)||(29681895-29681943)


Alignment Details
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 222 - 326
Target Start/End: Complemental strand, 33379720 - 33379616
Alignment:
Q  222 tttccaaaaatcgtaagttctgaaaggatgctaataccaaacttctcaagactatctacaaccatggttagcttcccgatgcacatgacatgaatcagat 321  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33379720 tttccaaaaatcgtaagttctgaatggatgctaataccaaacttctcaagactatctacaaccatggttagcttcccgatgcacatgacatgaatcagat 33379621  T
Q  322 gattc 326  Q
    |||||    
T  33379620 gattc 33379616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 33380836 - 33380714
Alignment:
Q  1 ttcattggataacaattttatgattaagattattttgtgtggaaaatcgtggggtggatagcacttgggtgatattgtggttggtgatattggtaacatt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||| || |||||    
T  33380836 ttcattggataacagttttatgattaagattattttgtgtggaaaatcgtggggtgggtagcacttggatgacattgtggttggtgatatttgtgacatt 33380737  T
Q  101 gatcaatcataatgtcacaagtg 123  Q
      |||| |||||||||| |||||    
T  33380736 tgtcaaccataatgtcataagtg 33380714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 33380666 - 33380598
Alignment:
Q  162 gttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagtattttccaaaa 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33380666 gttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcatctaagtattttccaaaa 33380598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 53261149 - 53261088
Alignment:
Q  166 tacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagtattttcca 227  Q
    ||||| ||| ||||||||||||  |||| |||||||||||||||||||||||||||||||||    
T  53261149 tacacatgtgacattgtggttggtcaatgtcaccaaccacaatgtcacctaagtattttcca 53261088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 46321500 - 46321439
Alignment:
Q  59 tagcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaa 120  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||| ||| || ||||||||||    
T  46321500 tagcacttgagtgacattgtggttggtgatattggtgacattgaccaaccacaatgtcacaa 46321439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 30023641 - 30023692
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacc 214  Q
    |||||||||||| ||||||||||||  |||| ||||||||||||||||||||    
T  30023641 ttgtacacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcacc 30023692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 54223655 - 54223700
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaat 208  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||||    
T  54223655 ttgtacacttgtaacattgtggttgatcaatattaccaaccacaat 54223700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 31012121 - 31012185
Alignment:
Q  60 agcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaagtga 124  Q
    |||||||| |||| |||||||||||||||| |||| ||||||| ||| || ||||||||| ||||    
T  31012121 agcacttgtgtgacattgtggttggtgataatggtgacattgaccaaccacaatgtcacatgtga 31012185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 6607453 - 6607399
Alignment:
Q  167 acacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagtatt 222  Q
    |||||||| ||||||||||||   ||| ||||||||||||||||||||||||||||    
T  6607453 acacttgtaacattgtggttggt-aatgtcaccaaccacaatgtcacctaagtatt 6607399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 24425232 - 24425275
Alignment:
Q  74 attgtggttggtgatattggtaacattgatcaatcataatgtca 117  Q
    |||| |||||||||||||||| ||||||||||| ||||||||||    
T  24425232 attgaggttggtgatattggtgacattgatcaaccataatgtca 24425275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 30023532 - 30023489
Alignment:
Q  176 acattgtggttgaccaatatcaccaaccacaatgtcacctaagt 219  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||    
T  30023532 acattatggttgaccaatgtcaccaaccacaatatcacctaagt 30023489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 41306680 - 41306642
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaa 201  Q
    |||||||||||| ||||| ||||||||||||||||||||    
T  41306680 ttgtacacttgtgacattatggttgaccaatatcaccaa 41306642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 36273056 - 36273109
Alignment:
Q  166 tacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagt 219  Q
    ||||||||| | ||||||||||  |||||||||| |||||||||||||| ||||    
T  36273056 tacacttgtgatattgtggttggtcaatatcaccgaccacaatgtcacccaagt 36273109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 42375155 - 42375094
Alignment:
Q  59 tagcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaa 120  Q
    |||||||||||||| || | | | ||||| |||||| |||||||||||||| ||||||||||    
T  42375155 tagcacttgggtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcacaa 42375094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 31846956 - 31846896
Alignment:
Q  59 tagcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcaca 119  Q
    |||||||||||||| |||||||||||||| |||||| | ||||  ||| || |||||||||    
T  31846956 tagcacttgggtgacattgtggttggtgacattggtgatattggccaaccacaatgtcaca 31846896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 39336345 - 39336297
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtc 211  Q
    |||||||||||| ||||||||||||||  || ||| |||||||||||||    
T  39336345 ttgtacacttgtgacattgtggttgacatatgtcatcaaccacaatgtc 39336297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 42756285 - 42756345
Alignment:
Q  166 tacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagtattttcc 226  Q
    |||||||||  |||||||||||| |||  |||||||||||||||||||  |||| ||||||    
T  42756285 tacacttgtggcattgtggttgatcaaagtcaccaaccacaatgtcactcaagtgttttcc 42756345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 16193825 - 16193884
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagtatt 222  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||    
T  16193825 ttgtacacttgtgacattgtggttgaccaatgtcaccaaccacaatgtcacccaagtatt 16193884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 2980796 - 2980845
Alignment:
Q  168 cacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaa 217  Q
    ||||||| ||||| |||||||||||| |||||||||||||||||||||||    
T  2980796 cacttgtgacattatggttgaccaatttcaccaaccacaatgtcacctaa 2980845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 369519 - 369579
Alignment:
Q  167 acacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagtattttcca 227  Q
    |||||||| ||||||||||||  |||| |||||||||||||||||||  ||||||| ||||    
T  369519 acacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcactcaagtattatcca 369579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 2543852 - 2543895
Alignment:
Q  176 acattgtggttgaccaatatcaccaaccacaatgtcacctaagt 219  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||    
T  2543852 acattgtggttggccaatgtcaccaaccacaatgtcacccaagt 2543895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 2913995 - 2913929
Alignment:
Q  59 tagcacttgggtgata--ttgtggttggtgatattggtaacattgatcaatcataatgtcacaagtg 123  Q
    |||||||||||||| |  |||||||||||||||||||| || |||||||| || | |||||||||||    
T  2913995 tagcacttgggtgacacattgtggttggtgatattggtgacgttgatcaaccacagtgtcacaagtg 2913929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 11448106 - 11448063
Alignment:
Q  176 acattgtggttgaccaatatcaccaaccacaatgtcacctaagt 219  Q
    |||||||||||| ||||||| |||||||||||||||||| ||||    
T  11448106 acattgtggttggccaatattaccaaccacaatgtcacccaagt 11448063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 11448186 - 11448220
Alignment:
Q  188 accaatatcaccaaccacaatgtcacctaagtatt 222  Q
    ||||||||||||||||||||||||||| |||||||    
T  11448186 accaatatcaccaaccacaatgtcacccaagtatt 11448220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 222
Target Start/End: Complemental strand, 28581781 - 28581735
Alignment:
Q  176 acattgtggttgaccaatatcaccaaccacaatgtcacctaagtatt 222  Q
    |||||||||||| ||||| |||||||||||||||||| | |||||||    
T  28581781 acattgtggttggccaatgtcaccaaccacaatgtcagccaagtatt 28581735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 11448217 - 11448180
Alignment:
Q  63 acttgggtgatattgtggttggtgatattggtaacatt 100  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  11448217 acttgggtgacattgtggttggtgatattggtgacatt 11448180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 12605651 - 12605710
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagtatt 222  Q
    |||||||| ||| |||||||||||||||||| ||||||||||||||||||| ||||||||    
T  12605651 ttgtacacgtgtgacattgtggttgaccaatgtcaccaaccacaatgtcacttaagtatt 12605710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 291242 - 291181
Alignment:
Q  59 tagcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaa 120  Q
    ||||||||||||||||| | | | ||||| |||||| |||||||||||||| ||||||||||    
T  291242 tagcacttgggtgatatagagttgggtgacattggtgacattgatcaatcacaatgtcacaa 291181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 19417438 - 19417503
Alignment:
Q  59 tagcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaagtga 124  Q
    |||||||||||||| |||||||||||||| |||||| |||||| ||||  | ||||||||| ||||    
T  19417438 tagcacttgggtgacattgtggttggtgacattggtgacattggtcaactacaatgtcacatgtga 19417503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 29385450 - 29385390
Alignment:
Q  59 tagcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcaca 119  Q
    |||||||||||||| |||||||||||||| |||||| ||||||  ||| || |||||||||    
T  29385450 tagcacttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgtcaca 29385390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 896318 - 896275
Alignment:
Q  176 acattgtggttgaccaatatcaccaaccacaatgtcacctaagt 219  Q
    ||||||||||||| ||||||||||||||||||| ||||| ||||    
T  896318 acattgtggttgatcaatatcaccaaccacaatctcacccaagt 896275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 117
Target Start/End: Original strand, 2093930 - 2093988
Alignment:
Q  59 tagcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtca 117  Q
    |||||||||||||| || | | | |||||||||||| |||||||||||||| |||||||    
T  2093930 tagcacttgggtgacatagagttgggtgatattggtgacattgatcaatcacaatgtca 2093988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 9177956 - 9177990
Alignment:
Q  178 attgtggttgaccaatatcaccaaccacaatgtca 212  Q
    |||||||||| ||||||||||||||||||||||||    
T  9177956 attgtggttggccaatatcaccaaccacaatgtca 9177990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 5215681 - 5215722
Alignment:
Q  178 attgtggttgaccaatatcaccaaccacaatgtcacctaagt 219  Q
    |||||||||||||||| ||| |||||||||||||||| ||||    
T  5215681 attgtggttgaccaatgtcatcaaccacaatgtcacccaagt 5215722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 7137638 - 7137699
Alignment:
Q  63 acttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaagtga 124  Q
    |||||||||| ||||  |||||||| |||||| ||||||| ||| || ||||||||||||||    
T  7137638 acttgggtgacattgcagttggtgaaattggtgacattgaccaaccacaatgtcacaagtga 7137699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 16439127 - 16439192
Alignment:
Q  55 tggatagcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaa 120  Q
    |||||||||||||| |||||| | | | ||| |||||||| |||||| ||||||| ||||||||||    
T  16439127 tggatagcacttggatgatatagagttgggtaatattggtgacattggtcaatcacaatgtcacaa 16439192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 41287997 - 41288042
Alignment:
Q  182 tggttgaccaatatcaccaaccacaatgtcacctaagtattttcca 227  Q
    |||||| |||||||||||||||||||||||||| || |||| ||||    
T  41287997 tggttggccaatatcaccaaccacaatgtcacccaaatattatcca 41288042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 896268 - 896304
Alignment:
Q  56 ggatagcacttgggtgatattgtggttggtgatattg 92  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  896268 ggataacacttgggtgagattgtggttggtgatattg 896304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 25879414 - 25879450
Alignment:
Q  176 acattgtggttgaccaatatcaccaaccacaatgtca 212  Q
    |||||||||||| | ||||||||||||||||||||||    
T  25879414 acattgtggttggctaatatcaccaaccacaatgtca 25879450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 28819037 - 28819001
Alignment:
Q  84 gtgatattggtaacattgatcaatcataatgtcacaa 120  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  28819037 gtgatattggtgacattggtcaatcataatgtcacaa 28819001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 29081695 - 29081751
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagt 219  Q
    |||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||    
T  29081695 ttgtacacttgtgacattgtggttgaccaatgtcaccaaccacaatatcacccaagt 29081751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 32385420 - 32385369
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacc 214  Q
    |||||||||||| |||||||||||||||||| ||||||| ||||||||||||    
T  32385420 ttgtacacttgtcacattgtggttgaccaatgtcaccaatcacaatgtcacc 32385369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 48342849 - 48342790
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagtatt 222  Q
    ||||||| |||| |||||||||||||||||| || ||||||| ||||||||| |||||||    
T  48342849 ttgtacatttgtgacattgtggttgaccaatgtcgccaaccataatgtcacccaagtatt 48342790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 36738319 - 36738269
Alignment:
Q  167 acacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaa 217  Q
    |||||||| | ||||||||||||||||||||||||||||||  ||||||||    
T  36738319 acacttgtgatattgtggttgaccaatatcaccaaccacaacatcacctaa 36738269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 5633181 - 5633217
Alignment:
Q  190 caatatcaccaaccacaatgtcacctaagtattttcc 226  Q
    ||||||||||||||||||||||||| |||||||||||    
T  5633181 caatatcaccaaccacaatgtcacccaagtattttcc 5633217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 36738372 - 36738420
Alignment:
Q  178 attgtggttgaccaatatcaccaaccacaatgtcacctaagtattttcc 226  Q
    ||||| |||||||||| |||||||||||||||||||| || ||||||||    
T  36738372 attgtagttgaccaatgtcaccaaccacaatgtcacccaaatattttcc 36738420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 11512436 - 11512393
Alignment:
Q  176 acattgtggttgaccaatatcaccaaccacaatgtcacctaagt 219  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||    
T  11512436 acattgtggttggccaatgtcaccaaccacaatgtcacccaagt 11512393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 22894000 - 22894051
Alignment:
Q  168 cacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagt 219  Q
    ||||||| ||||||||||||  |||| |||||||||||||||||||| ||||    
T  22894000 cacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcacccaagt 22894051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 29081592 - 29081655
Alignment:
Q  59 tagcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaagt 122  Q
    ||||| |||||||| |||||||||||||| || ||| ||||||| ||| || ||||||||||||    
T  29081592 tagcatttgggtgacattgtggttggtgacatcggtgacattgaccaaccacaatgtcacaagt 29081655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 94
Target Start/End: Complemental strand, 29081755 - 29081720
Alignment:
Q  59 tagcacttgggtgatattgtggttggtgatattggt 94  Q
    ||||||||||||||||||||||||||||| ||||||    
T  29081755 tagcacttgggtgatattgtggttggtgacattggt 29081720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 51046092 - 51046127
Alignment:
Q  85 tgatattggtaacattgatcaatcataatgtcacaa 120  Q
    |||||||||| |||||||||||||||||||||||||    
T  51046092 tgatattggtgacattgatcaatcataatgtcacaa 51046127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 28309137 - 28309087
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcac 213  Q
    |||||||||||| | ||||||||||| |||| ||| |||||||||||||||    
T  28309137 ttgtacacttgtgatattgtggttgatcaatgtcatcaaccacaatgtcac 28309087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 49159543 - 49159501
Alignment:
Q  59 tagcacttgggtgatattgtggttggtgatattggtaacattg 101  Q
    |||||||||||||| |||||||||||||| |||||| ||||||    
T  49159543 tagcacttgggtgacattgtggttggtgacattggtgacattg 49159501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 31342056 - 31342020
Alignment:
Q  176 acattgtggttgaccaatatcaccaaccacaatgtca 212  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  31342056 acattgtggttggccaatgtcaccaaccacaatgtca 31342020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 31342107 - 31342170
Alignment:
Q  167 acacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagtattttccaaaaa 231  Q
    |||||||| ||||||||||||   ||| |||||||||||||||||||| || |||| ||||||||    
T  31342107 acacttgtaacattgtggttggt-aatgtcaccaaccacaatgtcacccaaatattatccaaaaa 31342170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 48342312 - 48342356
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaa 207  Q
    ||||||| |||| |||||||||||| ||||||||||| |||||||    
T  48342312 ttgtacatttgtgacattgtggttggccaatatcaccgaccacaa 48342356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 1875 - 1812
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagtattttcc 226  Q
    |||||||||||| | ||||||||||| |||| |||||||||||||||||||| |||| ||||||    
T  1875 ttgtacacttgtgatattgtggttgatcaatgtcaccaaccacaatgtcacccaagtgttttcc 1812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 196 - 259
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagtattttcc 226  Q
    |||||||||||| | ||||||||||| |||| |||||||||||||||||||| |||| ||||||    
T  196 ttgtacacttgtgatattgtggttgatcaatgtcaccaaccacaatgtcacccaagtgttttcc 259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 10449510 - 10449451
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagtatt 222  Q
    |||||||||||| ||||||||||||  |||| |||||||||||||||||||| |||||||    
T  10449510 ttgtacacttgtgacattgtggttggtcaatgtcaccaaccacaatgtcacccaagtatt 10449451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 6539724 - 6539659
Alignment:
Q  59 tagcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaagtga 124  Q
    |||||||||||||| |||||||||| |||||||||| |||||| |||| || ||||||||| ||||    
T  6539724 tagcacttgggtgacattgtggttgatgatattggtgacattggtcaaccacaatgtcacatgtga 6539659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 28810060 - 28810102
Alignment:
Q  167 acacttgttacattgtggttgaccaatatcaccaaccacaatg 209  Q
    |||||||| |||||||||||||||||| |||||||||||||||    
T  28810060 acacttgtgacattgtggttgaccaatgtcaccaaccacaatg 28810102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 719087 - 719136
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtca 212  Q
    |||||||||| | |||||||| |||||||||||||||||||||| |||||    
T  719087 ttgtacacttataacattgtgattgaccaatatcaccaaccacattgtca 719136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 28739311 - 28739348
Alignment:
Q  63 acttgggtgatattgtggttggtgatattggtaacatt 100  Q
    |||||||||||||||||||||||||||||||| |||||    
T  28739311 acttgggtgatattgtggttggtgatattggtgacatt 28739348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 227
Target Start/End: Complemental strand, 15928135 - 15928072
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagtattttcca 227  Q
    |||||||||||| |||||||||||||  ||| ||||||| |||||||||||| ||||||| ||||    
T  15928135 ttgtacacttgtaacattgtggttga-taatgtcaccaatcacaatgtcacccaagtattatcca 15928072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 44291217 - 44291149
Alignment:
Q  55 tggatagcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaagtg 123  Q
    |||||||| ||||| | | |||||||||||| |||||||| |||||| |||| || |||||||||||||    
T  44291217 tggatagcgcttggataacattgtggttggttatattggtgacattggtcaaccacaatgtcacaagtg 44291149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 44801815 - 44801755
Alignment:
Q  163 ttgtacactt-gttacattgtggttgaccaatatcaccaaccacaatgtcacctaagtatt 222  Q
    |||||||||| || |||||||||||| ||||| ||| |||||||||| |||||||||||||    
T  44801815 ttgtacactttgtgacattgtggttggccaatgtcatcaaccacaatatcacctaagtatt 44801755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 49200119 - 49200059
Alignment:
Q  63 acttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaagtg 123  Q
    |||| ||||| ||||||||||||||||||| | ||||||| ||| || |||||||||||||    
T  49200119 acttaggtgacattgtggttggtgatattgatgacattgaccaaccacaatgtcacaagtg 49200059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 222
Target Start/End: Original strand, 49200090 - 49200122
Alignment:
Q  190 caatatcaccaaccacaatgtcacctaagtatt 222  Q
    |||||||||||||||||||||||||||||||||    
T  49200090 caatatcaccaaccacaatgtcacctaagtatt 49200122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 50754773 - 50754729
Alignment:
Q  176 acattgtggttgaccaatatcaccaaccacaatgtcacctaagta 220  Q
    |||||||||||| ||||| |||||||||||||||||||| |||||    
T  50754773 acattgtggttggccaatgtcaccaaccacaatgtcaccaaagta 50754729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 28739422 - 28739465
Alignment:
Q  176 acattgtggttgaccaatatcaccaaccacaatgtcacctaagt 219  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||    
T  28739422 acattgtggttggccaatgtcaccaaccacaatgtcacccaagt 28739465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 44291144 - 44291182
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaa 201  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  44291144 ttgtacacttgtgacattgtggttgaccaatgtcaccaa 44291182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 44381917 - 44381967
Alignment:
Q  65 ttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgt 115  Q
    |||||||| ||||||||||||||||||||| ||||||| ||| || |||||    
T  44381917 ttgggtgacattgtggttggtgatattggtgacattgaccaaccacaatgt 44381967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 9379811 - 9379871
Alignment:
Q  59 tagcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcaca 119  Q
    ||||||||||||||||| ||||||||||| |||||| | ||||  ||| || |||||||||    
T  9379811 tagcacttgggtgatatcgtggttggtgacattggtgatattggccaaccacaatgtcaca 9379871  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 9884834 - 9884894
Alignment:
Q  59 tagcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcaca 119  Q
    |||||||| ||||| || ||||||||||| |||||| |||||| |||| || |||||||||    
T  9884834 tagcactttggtgacatagtggttggtgacattggtgacattggtcaaccacaatgtcaca 9884894  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 9885001 - 9884942
Alignment:
Q  63 acttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaagtg 123  Q
    ||||||||||||||||||||||||| ||| || ||||| ||||| || ||||| |||||||    
T  9885001 acttgggtgatattgtggttggtgacattcgtgacatt-atcaaccacaatgttacaagtg 9884942  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 26233794 - 26233838
Alignment:
Q  169 acttgttacattgtggttgaccaatatcaccaaccacaatgtcac 213  Q
    |||||| |||||||||||||||||| |||||||  ||||||||||    
T  26233794 acttgtaacattgtggttgaccaatgtcaccaattacaatgtcac 26233838  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 32787189 - 32787129
Alignment:
Q  63 acttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaagtg 123  Q
    |||| |||||||||||| || |||||||| || ||||||| |||||| ||| |||||||||    
T  32787189 acttaggtgatattgtgattcgtgatatttgtgacattgaccaatcacaatatcacaagtg 32787129  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 44938857 - 44938801
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagt 219  Q
    |||||||||||| ||||| ||||||  |||| |||| ||||||||||||||| ||||    
T  44938857 ttgtacacttgtgacattctggttggtcaatgtcactaaccacaatgtcacccaagt 44938801  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 50754884 - 50754825
Alignment:
Q  63 acttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaagtg 123  Q
    |||||||||| |||||||||||||| |||||| ||||| ||||| || ||||| |||||||    
T  50754884 acttgggtgacattgtggttggtgacattggtgacatt-atcaaccacaatgttacaagtg 50754825  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 50754853 - 50754893
Alignment:
Q  188 accaatatcaccaaccacaatgtcacctaagtattttccaa 228  Q
    |||||| |||||||||||||||||||| ||||||| |||||    
T  50754853 accaatgtcaccaaccacaatgtcacccaagtattatccaa 50754893  T

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Target: scaffold0110 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 26559 - 26503
Alignment:
Q  166 tacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagtatt 222  Q
    ||||||||| | |||||| ||||||||| ||||||||||||||||||| ||||||||    
T  26559 tacacttgtgatattgtgtttgaccaatgtcaccaaccacaatgtcacataagtatt 26503  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 33763505 - 33763457
Alignment:
Q  178 attgtggttgaccaatatcaccaaccacaatgtcacctaagtattttcc 226  Q
    |||||||||||||||| |||||||||||||||||||| || ||||||||    
T  33763505 attgtggttgaccaatgtcaccaaccacaatgtcacccaattattttcc 33763457  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 45051337 - 45051402
Alignment:
Q  166 tacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagtattttccaaaaat 232  Q
    ||||| ||| |||||||||| | ||||| |||||||||||||||||| ||||||||||||| |||||    
T  45051337 tacacatgtgacattgtggtcggccaatgtcaccaaccacaatgtca-ctaagtattttcccaaaat 45051402  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 4531839 - 4531895
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagt 219  Q
    ||||| |||||| ||||||||||||  ||||||||||||| ||||||||| ||||||    
T  4531839 ttgtatacttgtgacattgtggttggtcaatatcaccaactacaatgtcatctaagt 4531895  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 31470901 - 31470845
Alignment:
Q  67 gggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaagtg 123  Q
    |||||||||||||||||||| ||||||| ||||||  ||| || |||||||||||||    
T  31470901 gggtgatattgtggttggtggtattggtgacattggccaaccacaatgtcacaagtg 31470845  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 37940743 - 37940807
Alignment:
Q  59 tagcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaagtg 123  Q
    |||||||||| | ||||||||||||||||||||| | | |||||  ||| ||||||||| |||||    
T  37940743 tagcacttggataatattgtggttggtgatattgatgaaattgacaaattataatgtcataagtg 37940807  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 7755393 - 7755342
Alignment:
Q  168 cacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagt 219  Q
    ||||||| |||||||||||| ||||| |||||||||||||||||||| ||||    
T  7755393 cacttgtgacattgtggttggccaatgtcaccaaccacaatgtcacccaagt 7755342  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 39819056 - 39819116
Alignment:
Q  59 tagcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcaca 119  Q
    |||||||||||||| |||||||||||||| |||||| ||||||  ||| || |||||||||    
T  39819056 tagcacttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgtcaca 39819116  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 5095749 - 5095780
Alignment:
Q  56 ggatagcacttgggtgatattgtggttggtga 87  Q
    ||||||||||||||||||||||||||||||||    
T  5095749 ggatagcacttgggtgatattgtggttggtga 5095780  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 32545936 - 32545872
Alignment:
Q  56 ggatagcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaa 120  Q
    ||||||||||||||||| || | | || |||| |||||| ||||||  |||||||||||||||||    
T  32545936 ggatagcacttgggtgacatagagtttagtgacattggtgacattggccaatcataatgtcacaa 32545872  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 32315769 - 32315719
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcac 213  Q
    ||||||| |||| |||||||||||| ||||| |||||||||||||||||||    
T  32315769 ttgtacaattgtgacattgtggttggccaatgtcaccaaccacaatgtcac 32315719  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 7211909 - 7211866
Alignment:
Q  176 acattgtggttgaccaatatcaccaaccacaatgtcacctaagt 219  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||    
T  7211909 acattgtggttggccaatgtcaccaaccacaatgtcacccaagt 7211866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 17272748 - 17272705
Alignment:
Q  176 acattgtggttgaccaatatcaccaaccacaatgtcacctaagt 219  Q
    |||||||||||| ||||| |||||||||||||||||||| ||||    
T  17272748 acattgtggttggccaatgtcaccaaccacaatgtcacccaagt 17272705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 29407555 - 29407492
Alignment:
Q  163 ttgtacacttgttacattgtggttgaccaatatcaccaaccacaatgtcacctaagtattttcc 226  Q
    |||||||||| | ||||||| |||| ||||||||||| || ||||| ||||| |||||||||||    
T  29407555 ttgtacacttatgacattgtagttggccaatatcaccgacgacaatatcacccaagtattttcc 29407492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 25099349 - 25099395
Alignment:
Q  167 acacttgttacattgtggttgaccaatatcaccaaccacaatgtcac 213  Q
    |||||||| |||||||||||||||||  |||||||||||||| ||||    
T  25099349 acacttgtgacattgtggttgaccaaagtcaccaaccacaatttcac 25099395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 24532858 - 24532795
Alignment:
Q  59 tagcacttgggtgatattgtggttggtgatattggtaacattgatcaatcataatgtcacaagtg 123  Q
    |||||||||||| | |||||||||||||| | | || ||||||||||| || |||||||||||||    
T  24532858 tagcacttgggtaacattgtggttggtgacact-gtgacattgatcaaccacaatgtcacaagtg 24532795  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 29681943 - 29681895
Alignment:
Q  53 ggtggatagcacttgggtgatattgtggttggtgatattggtaacattg 101  Q
    ||||||||  |||||||||| |||||||||||||| |||||| ||||||    
T  29681943 ggtggataatacttgggtgacattgtggttggtgacattggtgacattg 29681895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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