View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17842_low_18 (Length: 326)

Name: NF17842_low_18
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17842_low_18
NF17842_low_18
[»] chr1 (7 HSPs)
chr1 (11-315)||(37869836-37870140)
chr1 (11-315)||(37861660-37861957)
chr1 (143-278)||(37914468-37914604)
chr1 (11-98)||(37883723-37883810)
chr1 (214-301)||(37883532-37883621)
chr1 (35-114)||(37914611-37914683)
chr1 (143-196)||(37883657-37883710)
[»] scaffold0187 (9 HSPs)
scaffold0187 (11-98)||(4066-4153)
scaffold0187 (11-98)||(13632-13719)
scaffold0187 (11-98)||(23960-24047)
scaffold0187 (220-303)||(13440-13526)
scaffold0187 (220-303)||(23768-23854)
scaffold0187 (143-196)||(13566-13619)
scaffold0187 (143-196)||(23894-23947)
scaffold0187 (214-270)||(4255-4312)
scaffold0187 (143-196)||(4166-4219)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 37870140 - 37869836
Alignment:
Q  11 ttattcttagatgtgaagcaactgaaaattgagaaaaaacctgaagaagacttgttctgcccattaccacctcccatgatgattaatgctagctgctgga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37870140 ttattcttagatgtgaagcaactgaaaattgagaaaaaacctgaagaagacttgttctgcccattaccacctcccatgatgattaatgctagctgctgga 37870041  T
Q  111 taaggacaacactaatttcagcttcnnnnnnngctagaagtggttgtcttggtttttaaatgacaaggtaatatctcttatttatactacataagtgatt 210  Q
    ||||||||||||||||||| |||||       |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37870040 taaggacaacactaatttctgcttctttttttgctagaagtggttgtcttggtttttaaatgacaatgtaatatctcttatttatactacataagtgatt 37869941  T
Q  211 aacagtgttaaattaagaatctgtaaagcagtggtaaagaccaatgtaaatggttcaaatcaagctgactaggcagggttgtaacaactttgtgaagcac 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  37869940 aacagtgttaaattaagaatctgtaaagcagtggtaaagaccaatgtaaatggttcaaatcaagctgacttggcagggttgtaacaactttgtgaagcac 37869841  T
Q  311 atttt 315  Q
    |||||    
T  37869840 atttt 37869836  T

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Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 11 - 315
Target Start/End: Complemental strand, 37861957 - 37861660
Alignment:
Q  11 ttattcttagatgtgaagcaactgaaaattgagaaaaaacctgaagaagacttgttctgcccattaccacctcccatgatgattaatgctagctgctgga 110  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||   |||||||  ||||||||||||||   |||| |||||    
T  37861957 ttattcttagatgtgaagcaactgaaaattgagaagaaacctgaagaagacttgttttgcc---taccaccaaccatgatgattaat---agcttctgga 37861864  T
Q  111 taaggacaacactaatttcagcttcnnnnnnn-gctagaagtggttgtcttggtttttaaatgacaaggtaatatctcttatttatactacataagtgat 209  Q
    ||||||||||||||||||| ||| |        ||||||| || ||||||||||||| ||||||||| |||||||||||||||||||    |||||||||    
T  37861863 taaggacaacactaatttctgctacttttttttgctagaaatgattgtcttggttttcaaatgacaatgtaatatctcttatttatat---ataagtgat 37861767  T
Q  210 taacagtgttaaattaagaatctg-taaagcagtggtaaagaccaatgtaaatggttcaaatcaagctgactaggcagggttgtaacaactttgtgaagc 308  Q
    | | | ||| |||||||||||||  ||||| |||||||||||| ||  |||||||||||||||| ||||| | |||||||||||||||||||||| ||||    
T  37861766 tcagaatgtaaaattaagaatctaataaaggagtggtaaagactaacctaaatggttcaaatcatgctgagttggcagggttgtaacaactttgtcaagc 37861667  T

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Target: chr1; HSP #3
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 143 - 278
Target Start/End: Complemental strand, 37914604 - 37914468
Alignment:
Q  143 gctagaagtggttgtcttggtttttaaatgacaaggtaatatctcttatttatactacataagtgattaacagtgttaaattaagaatctg-taaagcag 241  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  37914604 gctagaagtgattgtcttggtttttaaatgacaaggtaatatctcttatttatactacataagtgattaacagtgtgaaattaagaatctgataaagcag 37914505  T
Q  242 tggtaaagaccaatgtaaatggttcaaatcaagctga 278  Q
    |||||||||| || ||||||||||||||||| |||||    
T  37914504 tggtaaagactaacgtaaatggttcaaatcatgctga 37914468  T

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Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 37883810 - 37883723
Alignment:
Q  11 ttattcttagatgtgaagcaactgaaaattgagaaaaaacctgaagaagacttgttctgcccattaccacctcccatgatgattaatg 98  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| |||||||||    
T  37883810 ttattcttagatgtgaagcaattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatg 37883723  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 37883621 - 37883532
Alignment:
Q  214 agtgttaaattaagaatctg-taaagcagtggtaaagaccaatgtaaatggttcaaatcaagctgac-taggcagggttgtaacaacttt 301  Q
    ||||| |||||||||||||| |||||||||||||||||| ||  |||||||||||||||| |||||| | |||| |||||||||||||||    
T  37883621 agtgtgaaattaagaatctgataaagcagtggtaaagactaacataaatggttcaaatcatgctgactttggcaaggttgtaacaacttt 37883532  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 37914683 - 37914611
Alignment:
Q  35 aaaattgagaaaaaacctgaagaagacttgttctgcccattaccacctcccatgatgattaatgctagctgctggataag 114  Q
    ||||||||||| |||||||||||||||||     |||  |||||||||||||||||||||||||||| ||||| ||||||    
T  37914683 aaaattgagaagaaacctgaagaagactta----gcc--ttaccacctcccatgatgattaatgcta-ctgctagataag 37914611  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 37883710 - 37883657
Alignment:
Q  143 gctagaagtggttgtcttggtttttaaatgacaaggtaatatctcttatttata 196  Q
    |||||||| | |||| ||| |||| ||||||||||| |||||||||||||||||    
T  37883710 gctagaagcgattgtattgtttttcaaatgacaaggaaatatctcttatttata 37883657  T

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Target: scaffold0187 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 4066 - 4153
Alignment:
Q  11 ttattcttagatgtgaagcaactgaaaattgagaaaaaacctgaagaagacttgttctgcccattaccacctcccatgatgattaatg 98  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| |||||||||    
T  4066 ttattcttagatgtgaagcaattgaaaattgagaagaaacctgaagaagacttgttctgcctattaccatctcccatggtgattaatg 4153  T

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Target: scaffold0187; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 13719 - 13632
Alignment:
Q  11 ttattcttagatgtgaagcaactgaaaattgagaaaaaacctgaagaagacttgttctgcccattaccacctcccatgatgattaatg 98  Q
    ||||| ||||||||||||||| ||||||||||||| |||| ||  |||||||||||| ||| ||||||||||||||||||||||||||    
T  13719 ttatttttagatgtgaagcaattgaaaattgagaagaaacttgtggaagacttgttccgcctattaccacctcccatgatgattaatg 13632  T

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Target: scaffold0187; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 24047 - 23960
Alignment:
Q  11 ttattcttagatgtgaagcaactgaaaattgagaaaaaacctgaagaagacttgttctgcccattaccacctcccatgatgattaatg 98  Q
    ||||| ||||||||||||||| ||||||||||||| |||| ||  |||||||||||| ||| ||||||||||||||||||||||||||    
T  24047 ttatttttagatgtgaagcaattgaaaattgagaagaaacttgtggaagacttgttccgcctattaccacctcccatgatgattaatg 23960  T

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Target: scaffold0187; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 13526 - 13440
Alignment:
Q  220 aaattaagaatctg-taaagcagtggtaa--agaccaatgtaaatggttcaaatcaagctgactaggcagggttgtaacaactttgt 303  Q
    |||||||||||||  ||||| ||||||||  ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||    
T  13526 aaattaagaatctaataaaggagtggtaattagaccaatgtaaatggttcaaatcatgctgagttggcagggttgtaacaactttgt 13440  T

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Target: scaffold0187; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 23854 - 23768
Alignment:
Q  220 aaattaagaatctg-taaagcagtggtaa--agaccaatgtaaatggttcaaatcaagctgactaggcagggttgtaacaactttgt 303  Q
    |||||||||||||  ||||| ||||||||  ||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||    
T  23854 aaattaagaatctaataaaggagtggtaattagaccaatgtaaatggttcaaatcatgctgagttggcagggttgtaacaactttgt 23768  T

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Target: scaffold0187; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 13619 - 13566
Alignment:
Q  143 gctagaagtggttgtcttggtttttaaatgacaaggtaatatctcttatttata 196  Q
    |||||||||| |||||||| |||| ||||||||||| |||||||||||||||||    
T  13619 gctagaagtgattgtcttgtttttcaaatgacaaggaaatatctcttatttata 13566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 23947 - 23894
Alignment:
Q  143 gctagaagtggttgtcttggtttttaaatgacaaggtaatatctcttatttata 196  Q
    |||||||||| |||||||| |||| ||||||||||| |||||||||||||||||    
T  23947 gctagaagtgattgtcttgtttttcaaatgacaaggaaatatctcttatttata 23894  T

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Target: scaffold0187; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 4255 - 4312
Alignment:
Q  214 agtgttaaattaagaatctg-taaagcagtggtaaagaccaatgtaaatggttcaaat 270  Q
    ||||| |||||||||||||| |||||||||||||||||| ||  ||||||||||||||    
T  4255 agtgtgaaattaagaatctgataaagcagtggtaaagactaacataaatggttcaaat 4312  T

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Target: scaffold0187; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 196
Target Start/End: Original strand, 4166 - 4219
Alignment:
Q  143 gctagaagtggttgtcttggtttttaaatgacaaggtaatatctcttatttata 196  Q
    |||||||| | |||| ||| |||| ||||||||||| |||||||||||||||||    
T  4166 gctagaagcgattgtattgtttttcaaatgacaaggaaatatctcttatttata 4219  T

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