View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17842_low_2 (Length: 736)

Name: NF17842_low_2
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17842_low_2
NF17842_low_2
[»] chr8 (6 HSPs)
chr8 (17-655)||(2364630-2365265)
chr8 (652-720)||(2364482-2364550)
chr8 (378-473)||(2368580-2368678)
chr8 (527-606)||(2368405-2368484)
chr8 (653-712)||(4055613-4055672)
chr8 (653-719)||(8062343-8062409)
[»] chr4 (3 HSPs)
chr4 (653-701)||(11158365-11158413)
chr4 (653-712)||(11264315-11264374)
chr4 (653-720)||(23819103-23819170)
[»] scaffold0020 (1 HSPs)
scaffold0020 (653-719)||(159963-160029)
[»] chr6 (4 HSPs)
chr6 (651-721)||(34538206-34538276)
chr6 (653-719)||(34939758-34939824)
chr6 (653-718)||(33067172-33067237)
chr6 (654-712)||(4420658-4420716)
[»] chr2 (4 HSPs)
chr2 (653-719)||(35993370-35993436)
chr2 (655-712)||(5781685-5781742)
chr2 (653-712)||(34652033-34652092)
chr2 (653-712)||(43065447-43065506)
[»] scaffold0159 (1 HSPs)
scaffold0159 (655-712)||(27017-27074)
[»] chr7 (3 HSPs)
chr7 (652-712)||(39539778-39539838)
chr7 (653-719)||(9423584-9423650)
chr7 (682-719)||(12834952-12834989)
[»] chr1 (3 HSPs)
chr1 (651-719)||(27140490-27140558)
chr1 (652-719)||(28689442-28689509)
chr1 (622-655)||(49365945-49365978)
[»] chr3 (2 HSPs)
chr3 (653-720)||(50952347-50952414)
chr3 (682-720)||(24624253-24624291)
[»] chr5 (1 HSPs)
chr5 (653-719)||(40205064-40205130)
[»] scaffold0147 (1 HSPs)
scaffold0147 (655-712)||(12701-12758)


Alignment Details
Target: chr8 (Bit Score: 576; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 17 - 655
Target Start/End: Complemental strand, 2365265 - 2364630
Alignment:
Q  17 catagggagaaataaaccattcacaaatacattgatccagtggtttagctataatttcatttttatcaatgttgtaaacaaggattgcaaaaagtagagg 116  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  2365265 cataaggagaaataaaccattcacaaatacattgatccagtggtttagctataatttcatttttatcaatgttgtgaacaaggatcgcaaaaagtagagg 2365166  T
Q  117 tttgttcaaattctgaacaaaccacttccatttgtgaaaaatataaaccaacatcaggtagatcataaaagattgtttatatgcatgctaatatatttat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2365165 tttgttcaaattctgaacaaaccacttccatttgtgaaaaatataaaccaacatcaggtagatcataaaagattgtttatatgcatgctaatatatttat 2365066  T
Q  217 tacnnnnnnnaaaaatggaaatcgaatatataaataaaggaagaagccgaagcaagtacaaggagtacttgaatcgctgatatgtttattcctgataaca 316  Q
    |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   ||||||||| |||||||||    
T  2365065 tactttttttaaaaatggaaatcgaatatataaataaaggaagaagccgaagcaagtacaaggagtactcgaatcgct---atgtttattactgataaca 2364969  T
Q  317 aattaggatgatcaagtgtacctgaaggataaccatgtggtgcatgataagatggttgatgatgaggataaccagaaggtggataccctcctcctgcatt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2364968 aattaggatgatcaagtgtacctgaaggataaccatgtggtgcatgataagatggttgatgatgaggataaccagaaggtggataccctcctcctgcatt 2364869  T
Q  417 tggtggatattgttgtggataataacctccttgaggtggatatgcagattgtggtggatagcatccttgaggtggataggaataggatccagctggtgga 516  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2364868 tggtggatattgttgtggataataacctccttgaggtggatatgtagattgtgggggatagcatccttgaggtggataggaataggatccagctggtgga 2364769  T
Q  517 taatagcctccttgatcatacttgtttctaccatagttcatcttgattcagtctaggacaatttaaaatttgcaaaaatataaatacatcagatacatat 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2364768 taatagcctccttgatcatacttgtttctaccatagttcatcttgattcagtctaggacaatttaaaatttgcaaaaatataaatacatcagatacatat 2364669  T
Q  617 tatccctgtttggataaacaacatagttaagcgcttata 655  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2364668 tatccctgtttggataaacaacatagttaagcgcttata 2364630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 652 - 720
Target Start/End: Complemental strand, 2364550 - 2364482
Alignment:
Q  652 tataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgtttt 720  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2364550 tataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgtttt 2364482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 378 - 473
Target Start/End: Complemental strand, 2368678 - 2368580
Alignment:
Q  378 atgaggataaccagaaggtggataccctcctcc---tgcatttggtggatattgttgtggataataacctccttgaggtggatatgcagattgtggtgg 473  Q
    |||||||||||| ||||||||||||||||||||   ||||| ||||||||| |||   ||||||||||||||||||||||||||||||| |||||||||    
T  2368678 atgaggataaccggaaggtggataccctcctccggctgcatgtggtggatactgtgaaggataataacctccttgaggtggatatgcagtttgtggtgg 2368580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 527 - 606
Target Start/End: Complemental strand, 2368484 - 2368405
Alignment:
Q  527 cttgatcatacttgtttctaccatagttcatcttgattcagtctaggacaatttaaaatttgcaaaaatataaatacatc 606  Q
    ||||||||| |||||||||||||| |||||| ||||||||  |||  ||| ||| ||||| |||||||||||| ||||||    
T  2368484 cttgatcatgcttgtttctaccattgttcatgttgattcaccctaaaacagtttcaaattggcaaaaatataagtacatc 2368405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 653 - 712
Target Start/End: Complemental strand, 4055672 - 4055613
Alignment:
Q  653 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 712  Q
    ||||||||||| |||||||||   |||| |||||||||||| ||||||||||||||||||    
T  4055672 ataagctatctcagagagcttaaggaaataagctgaaaacagtttatggacatgtcataa 4055613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 653 - 719
Target Start/End: Original strand, 8062343 - 8062409
Alignment:
Q  653 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttt 719  Q
    |||||||||||||||||| || | |||| ||||||||||||  ||||||||| ||  ||||||||||    
T  8062343 ataagctatcttagagagattatggaaataagctgaaaacatcttatggacacgttgtaaactgttt 8062409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 653 - 701
Target Start/End: Complemental strand, 11158413 - 11158365
Alignment:
Q  653 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatgg 701  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||||||    
T  11158413 ataagctatcttagagagcttgtggaaataagctgaaaacagtttatgg 11158365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 712
Target Start/End: Original strand, 11264315 - 11264374
Alignment:
Q  653 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 712  Q
    |||||| ||| |||||||||| | |||| ||| |||||||| ||||||||||||||||||    
T  11264315 ataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgtcataa 11264374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 720
Target Start/End: Original strand, 23819103 - 23819170
Alignment:
Q  653 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgtttt 720  Q
    ||||||||||||  ||||||| | |||| ||| ||||||||  ||||||||||||||||| |||||||    
T  23819103 ataagctatcttgaagagcttatagaaataagatgaaaacaacttatggacatgtcataagctgtttt 23819170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 653 - 719
Target Start/End: Complemental strand, 160029 - 159963
Alignment:
Q  653 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttt 719  Q
    |||||||||| || ||||||||| |||| |||||||||||   |||| |||||||||||||||||||    
T  160029 ataagctatcctaaagagcttgtggaaataagctgaaaactgcttatagacatgtcataaactgttt 159963  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 651 - 721
Target Start/End: Complemental strand, 34538276 - 34538206
Alignment:
Q  651 ttataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttttt 721  Q
    |||||||||||| ||||||| ||||  ||| |||||||||| | |||||||||||||| ||| ||||||||    
T  34538276 ttataagctatcctagagagtttgtataaataagctgaaaatagtttatggacatgtcgtaagctgttttt 34538206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 653 - 719
Target Start/End: Original strand, 34939758 - 34939824
Alignment:
Q  653 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttt 719  Q
    |||||||||| | ||||| || | |||| |||||||||||| |||||||||||||||||| ||||||    
T  34939758 ataagctatcctggagagtttatggaaataagctgaaaacaatttatggacatgtcataagctgttt 34939824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 653 - 718
Target Start/End: Original strand, 33067172 - 33067237
Alignment:
Q  653 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgtt 718  Q
    |||||||||||| |||||||||| |||| || ||||||||  ||||||||||| || |||||||||    
T  33067172 ataagctatcttggagagcttgtagaaataaactgaaaacgatttatggacatttcctaaactgtt 33067237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 654 - 712
Target Start/End: Original strand, 4420658 - 4420716
Alignment:
Q  654 taagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 712  Q
    ||||||||||| |||||||| | |||| ||||||||||||  ||||| |||||||||||    
T  4420658 taagctatcttggagagcttatggaaataagctgaaaacagcttatgaacatgtcataa 4420716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 653 - 719
Target Start/End: Complemental strand, 35993436 - 35993370
Alignment:
Q  653 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttt 719  Q
    |||||||||| |||||| ||| |  ||| |||||||||||| |||||||||| ||||||||||||||    
T  35993436 ataagctatcatagagaacttatgaaaataagctgaaaacaatttatggacacgtcataaactgttt 35993370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 655 - 712
Target Start/End: Original strand, 5781685 - 5781742
Alignment:
Q  655 aagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 712  Q
    |||||||| |||||||||| | |||| |||||||||||| |||||| |||||||||||    
T  5781685 aagctatcatagagagcttatggaaataagctgaaaacagtttatgcacatgtcataa 5781742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 712
Target Start/End: Complemental strand, 34652092 - 34652033
Alignment:
Q  653 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 712  Q
    |||||||||||| |||||||| | |||| ||| ||||||||  |||||||||||||||||    
T  34652092 ataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataa 34652033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 712
Target Start/End: Complemental strand, 43065506 - 43065447
Alignment:
Q  653 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 712  Q
    ||||| |||| | |||||||| | |||| |||||||||||| ||||||||||||||||||    
T  43065506 ataagttatcgtggagagcttattgaaataagctgaaaacaatttatggacatgtcataa 43065447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 655 - 712
Target Start/End: Original strand, 27017 - 27074
Alignment:
Q  655 aagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 712  Q
    |||||||| |||||||||| | |||| |||||||||||| |||||| |||||||||||    
T  27017 aagctatcatagagagcttatggaaataagctgaaaacagtttatgcacatgtcataa 27074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 652 - 712
Target Start/End: Complemental strand, 39539838 - 39539778
Alignment:
Q  652 tataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 712  Q
    ||||||||||| | | ||||||||| ||| ||||||||||||  |||||||||||||||||    
T  39539838 tataagctatcctcgggagcttgtcaaaataagctgaaaacagcttatggacatgtcataa 39539778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 653 - 719
Target Start/End: Complemental strand, 9423650 - 9423584
Alignment:
Q  653 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttt 719  Q
    |||||||||| | |||||||| | |||| ||||||||||||  ||||| |||||||||||| |||||    
T  9423650 ataagctatcctggagagcttcttgaaataagctgaaaacaacttatgaacatgtcataaattgttt 9423584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 719
Target Start/End: Complemental strand, 12834989 - 12834952
Alignment:
Q  682 aagctgaaaacactttatggacatgtcataaactgttt 719  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  12834989 aagctgaaaacagtttatggacatgtcataagctgttt 12834952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 651 - 719
Target Start/End: Original strand, 27140490 - 27140558
Alignment:
Q  651 ttataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttt 719  Q
    |||||||||||| | |||||||| |  ||| ||||||||||||  ||||||||||||||||| ||||||    
T  27140490 ttataagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgttt 27140558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 652 - 719
Target Start/End: Complemental strand, 28689509 - 28689442
Alignment:
Q  652 tataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttt 719  Q
    ||||||||||||| || ||||| |  ||| ||||||||||||  ||||||||||||||||| ||||||    
T  28689509 tataagctatcttggaaagcttatgaaaataagctgaaaacaacttatggacatgtcataagctgttt 28689442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 622 - 655
Target Start/End: Complemental strand, 49365978 - 49365945
Alignment:
Q  622 ctgtttggataaacaacatagttaagcgcttata 655  Q
    ||||||||||||||||| ||||||||||||||||    
T  49365978 ctgtttggataaacaacttagttaagcgcttata 49365945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 720
Target Start/End: Original strand, 50952347 - 50952414
Alignment:
Q  653 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgtttt 720  Q
    |||| ||||||| |||||||| | |||| ||||| |||||| |||||| ||||||||||| |||||||    
T  50952347 ataaactatcttggagagcttatggaaataagcttaaaacagtttatgaacatgtcataagctgtttt 50952414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 682 - 720
Target Start/End: Original strand, 24624253 - 24624291
Alignment:
Q  682 aagctgaaaacactttatggacatgtcataaactgtttt 720  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  24624253 aagctgaaaacagtttatggacatgtcataagctgtttt 24624291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 653 - 719
Target Start/End: Complemental strand, 40205130 - 40205064
Alignment:
Q  653 ataagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataaactgttt 719  Q
    |||||||||| | |||||||| | |||| ||||||||||||  |||||||||||| |||| ||||||    
T  40205130 ataagctatcctggagagcttatagaaataagctgaaaacagattatggacatgttataagctgttt 40205064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 712
Target Start/End: Complemental strand, 12758 - 12701
Alignment:
Q  655 aagctatcttagagagcttgtcgaaaaaagctgaaaacactttatggacatgtcataa 712  Q
    ||||||||||||||||||| | ||   ||||||||||||  |||||||||||||||||    
T  12758 aagctatcttagagagcttatggagctaagctgaaaacaacttatggacatgtcataa 12701  T

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