View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17842_low_22 (Length: 264)
Name: NF17842_low_22
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17842_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 29201115 - 29201349
Alignment:
| Q |
20 |
tgtgtgtgtgttcaatagttggagaaatgtaggtagctcaggttcatggcgtgtgtttttgtacagggaaatcatgcagcttatgccaaagattttcaat |
119 |
Q |
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| T |
29201115 |
tgtgtgtgtgttcaatagttggagaaatgtaggtagctcaggttcatggcgtgtgtttttgtacagggaaatcatgcagcttatgccaaagattttcaat |
29201214 |
T |
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| Q |
120 |
ccccacgttatcaggaaattcttcgacttacaagtggtaagaaaaggaaaaaccggcctgatattaaaagcttttcccatgaacttaactccaaaggagt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29201215 |
ccccacgttatcaggaaattcttcgacttacaagtggtaagaaaaggaaaaaccggcctgatattaaaagcttttcccatgaacttaactccaaaggagt |
29201314 |
T |
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| Q |
220 |
taggccttttccagtctggaaaaatcgtgcctttg |
254 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
29201315 |
taggccttttccagtctggaaaaatcgtgcctttg |
29201349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 12650779 - 12650545
Alignment:
| Q |
20 |
tgtgtgtgtgttcaatagttggagaaatgtaggtagctcaggttcatggcgtgtgtttttgtacagggaaatcatgcagcttatgccaaagattttcaat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12650779 |
tgtgtgtgtgttcaatagttggagaaatgtaggtagctcaggttcatggcgtgtgtttttgtacagggaaatcatgcagcttatgccaaagattttcaat |
12650680 |
T |
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| Q |
120 |
ccccacgttatcaggaaattcttcgacttacaagtggtaagaaaaggaaaaaccggcctgatattaaaagcttttcccatgaacttaactccaaaggagt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12650679 |
ccccacgttatcaggaaattcttcgacttacaagtggtaagaaaaggaaaaaccggcctgatattaaaagcttttcccatgaacttaactccaaaggagt |
12650580 |
T |
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| Q |
220 |
taggccttttccagtctggaaaaatcgtgcctttg |
254 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
12650579 |
taggccttttccagtctggaaacatcgtgcctttg |
12650545 |
T |
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