View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17842_low_25 (Length: 246)
Name: NF17842_low_25
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17842_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 5501469 - 5501709
Alignment:
| Q |
1 |
ctactctatggactaatactccaatatgaacaattattatcaaagtctaaaaccgaaattataacgaggataaaaaattatctttcctctagtttaggaa |
100 |
Q |
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| T |
5501469 |
ctactctatggactaatactccaatatgaacaattattatcaaagtctaaaaccaaaat---aacgaggataaaagacaatctttcctgtattttaggaa |
5501565 |
T |
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| Q |
101 |
tacaaactgataaaaatctttaatagaaacgaaaactgaaatatatttcaaagactaaaaagtcatttaagctttaaaattgaaataaatataagttaga |
200 |
Q |
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| T |
5501566 |
tacaaactgataaaaatctttaatagaaacgaaaactgaaatatatttcaaagacgaaaaagtcatttaagccttaaaattgaaataaatataagttaga |
5501665 |
T |
|
| Q |
201 |
tattactatgatccgatcaatctatttgtattagcctatgcttc |
244 |
Q |
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| T |
5501666 |
tattactatgatccgatcaatctatttgtattagcctctgcttc |
5501709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 5488668 - 5488804
Alignment:
| Q |
3 |
actctatggactaatactccaatatgaacaattattatcaaagtctaaaaccgaaattataacgaggataaaaaattatctttcctctagtttaggaata |
102 |
Q |
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| T |
5488668 |
actctatggactaatactccaatatgaacaattattatcaaagactaaaaccaaaataat---gaggataaaaaacaatctttcctgtattttaggaata |
5488764 |
T |
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| Q |
103 |
caaactgataaaaatctttaatagaaacgaaaactgaaat |
142 |
Q |
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| T |
5488765 |
caaactgatacaaatctttaatagaaacgaaaactgaaat |
5488804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 5524344 - 5524566
Alignment:
| Q |
15 |
aatactccaatatgaacaattattatcaaagtctaaaaccgaaattataacgaggataaaaaattatctttcctctagtttaggaatacaaactgataaa |
114 |
Q |
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| T |
5524344 |
aatactccaatatgaacaattattatcaaagattaaaacaaaaataat---gaggacaaaaaacaatctttcctgtattttaggaattcaaactgataaa |
5524440 |
T |
|
| Q |
115 |
aatctttaatagaaacgaaaactgaaa------tatatttcaaagactaaaaagtcatttaagctttaaaattgaaataaatataagttagatattacta |
208 |
Q |
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| T |
5524441 |
aatcttttatagaaatgaaaaccgaaatcaatgtatattacaaagagtaaaaa-ttatttaagccttaaa--ttaaatatatgtaagttagatattacta |
5524537 |
T |
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| Q |
209 |
tgatccgatcaatctatttgtattagcct |
237 |
Q |
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| T |
5524538 |
tgatcccatcactctatttgtattagcct |
5524566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 5488794 - 5488862
Alignment:
| Q |
176 |
aaaattgaaataaatataagttagatattactatgatccgatcaatctatttgtattagcctatgcttc |
244 |
Q |
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| T |
5488794 |
aaaactgaaatcaatgtaagttagatattactatgatccgatcaatctatttgtattagcctctgcttc |
5488862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 5483278 - 5483327
Alignment:
| Q |
5 |
tctatggactaatactccaatatgaacaattattatcaaagtctaaaacc |
54 |
Q |
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| T |
5483278 |
tctatggactaatactccaatatgaaaaattattatcaaagactaaaacc |
5483327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 5483354 - 5483405
Alignment:
| Q |
186 |
taaatataagttagatattactatgatccgatcaatctatttgtattagcct |
237 |
Q |
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|||||||| |||||||||||||||| ||| |||| ||||||||||||||||| |
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| T |
5483354 |
taaatataggttagatattactatgttcccatcactctatttgtattagcct |
5483405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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