View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17842_low_26 (Length: 238)
Name: NF17842_low_26
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17842_low_26 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 34426983 - 34426746
Alignment:
| Q |
1 |
actatgaaatattatctcatatcttgattaactttgtactcctgatgtcaaacatcctgtgccctttatgtgattgacaatgcaaatgaacagcatgaaa |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34426983 |
actatgaattattatctcatatcttgattaactttgtactactgatgtcaaacatcctgtgccctttatgtgattgacaatgcaaatgaacagcatgaaa |
34426884 |
T |
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| Q |
101 |
tttgatgttgcctcaaccttaaatattgtagctttttagataatcctttcttgacttgaccaatggtctcagactcgattattagtttagatattttcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34426883 |
tttgatgttgcctcaaccttaaatattgtagcttgttagataatcctttcttgacttgaccaatggtctcagactcgattattagtttagatattttcag |
34426784 |
T |
|
| Q |
201 |
attcttaatagcatagatttgagtcttttgccactctc |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
34426783 |
attcttaatagcatagatttgagtcttttgccactctc |
34426746 |
T |
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