View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17842_low_29 (Length: 226)
Name: NF17842_low_29
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17842_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 32184450 - 32184659
Alignment:
| Q |
1 |
tcggtgggatagatgaatatggtaaaggtgaaaatgcaatacctggaactggtatctcagaaatctcagcagaagcatcagatattgattgagcaagagt |
100 |
Q |
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| T |
32184450 |
tcggtgggatagatgaatatggtaaaggtgaaaatgcaatacctggaactggtatctcagaaatctcagcagaagcatcagatattgattgagcaagagt |
32184549 |
T |
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| Q |
101 |
agggaagtgagaaaagaaggagaacatagaagctgaagaagtaaacaaggtatagttaggtagagaaagttgttgagtgattgaaatgagaggtgaaaga |
200 |
Q |
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| T |
32184550 |
agggaagtgagaaaagaaggagaacatggaagctgaagaagtaaacaaggtatagttaggtagagaaagttgttgagtgattgaaatgagaggtgaaaga |
32184649 |
T |
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| Q |
201 |
aggaagatat |
210 |
Q |
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| T |
32184650 |
aggaagatat |
32184659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 32177276 - 32177323
Alignment:
| Q |
3 |
ggtgggatagatgaatatggtaaaggtgaaaatgcaatacctggaact |
50 |
Q |
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| T |
32177276 |
ggtgggatagatgaatatggtaaaggtgaaaatggaatgcctggaact |
32177323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 32177369 - 32177464
Alignment:
| Q |
87 |
gattgagcaagagtagggaagtgagaaaagaaggagaacatagaagctgaagaagtaaacaaggtatagttaggtagagaaagttgttgagtgatt |
182 |
Q |
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| T |
32177369 |
gattgagcaagagtagggaaatgagagaataaggagaacatagcagaagaagaagtgttcaagatgtaattagggagagaaagtttttgagtgatt |
32177464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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