View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17842_low_3 (Length: 709)
Name: NF17842_low_3
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17842_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 18 - 699
Target Start/End: Complemental strand, 43477168 - 43476467
Alignment:
| Q |
18 |
caccgacttccttagttaaattatctataattgccacaatactagctttttgcactaataccatttgcagttataaattgttttaccagcagagtaattt |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43477168 |
caccgacttccttagttaaattatctataattgccacaatactagctttttgcactaataccatttgcagttataaattgttttaccagcagagtaattt |
43477069 |
T |
|
| Q |
118 |
cctttctaagtagttttgacttttttactaaattggatttgtatatcaaattggcttaatacaaatagcaagtatagtaacacgatttacctgttcacat |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43477068 |
cctttctaagtagttttgacttttttactaaattggatttgtatatcaaattggcttaatacaaatagcaagtatagtaacacgatttacctgttcacat |
43476969 |
T |
|
| Q |
218 |
atagaagaagagagaagataaagagcaaataaggctagagttttggagaaatttccaaaatatatttggaaagttggacaagttatgtctatttagctaa |
317 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
43476968 |
atagaagaagagtgaagataaagagcaaataaggctagagttttggagaaatttccaaaatatatttggaaagttggacaagttatgtctatttagccaa |
43476869 |
T |
|
| Q |
318 |
ctgtact-------ttcaactcatcaatcctgnnnnnnnn--------------gaaagaactcatcaatcctgttaacatcgttacttttaacaaacat |
396 |
Q |
| |
|
|| |||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
43476868 |
ctctactttcaagtttcaactcatcaatcctgttttttttttttttttttttttgaaagaactcatcaattctgttaacatcgttacttttaacaaacat |
43476769 |
T |
|
| Q |
397 |
gtaaaaatgaacaagatcatgggaagtggtcataagaaacaaagcaaaatcatgatcactagaacaaaaatcgataaatgaaatgacggtgaagaacttc |
496 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43476768 |
gtaaaaatgaacaagatcatgggaagtggtcctaagaaacaaagcaaaatcatgatcactagaacaaaaatcgataaatgaaatgacggtgaagaacttc |
43476669 |
T |
|
| Q |
497 |
tcaaaccaagctcatgtacttgtttcagactatggaaggctttcttcaacttacacacttcccctttattatgaggaaactttggtgttggtaccatata |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
43476668 |
tcaaaccaagctcatgtacttgtttcagactatggaaggctttcttcaacttacacacttcccctttattatgaggaaactttggtggaggtaccatata |
43476569 |
T |
|
| Q |
597 |
aacttttctcggaagattatcatttaaaaaggggtctatattaggagaatactattgacgaacatcttcgctggtttatttagaaagacatttttcccct |
696 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
43476568 |
aacttttctcggaagattatcatttaaaaaggtgtctatattaggagaatactattgacggacatcttcgctgg-ttatttagaaagacatttttcccct |
43476470 |
T |
|
| Q |
697 |
ttg |
699 |
Q |
| |
|
||| |
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|
| T |
43476469 |
ttg |
43476467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 263 - 293
Target Start/End: Original strand, 12729146 - 12729176
Alignment:
| Q |
263 |
gagaaatttccaaaatatatttggaaagttg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
12729146 |
gagaaatttccaaaatatatttggaaagttg |
12729176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 263 - 293
Target Start/End: Original strand, 23686030 - 23686060
Alignment:
| Q |
263 |
gagaaatttccaaaatatatttggaaagttg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
23686030 |
gagaaatttccaaaatatatttggaaagttg |
23686060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 263 - 293
Target Start/End: Original strand, 24058267 - 24058297
Alignment:
| Q |
263 |
gagaaatttccaaaatatatttggaaagttg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
24058267 |
gagaaatttccaaaatatatttggaaagttg |
24058297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 263 - 293
Target Start/End: Original strand, 52653529 - 52653559
Alignment:
| Q |
263 |
gagaaatttccaaaatatatttggaaagttg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
52653529 |
gagaaatttccaaaatatatttggaaagttg |
52653559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 263 - 293
Target Start/End: Original strand, 49053560 - 49053590
Alignment:
| Q |
263 |
gagaaatttccaaaatatatttggaaagttg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
49053560 |
gagaaatttccaaaatatatttggaaagttg |
49053590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 263 - 293
Target Start/End: Original strand, 49061140 - 49061170
Alignment:
| Q |
263 |
gagaaatttccaaaatatatttggaaagttg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
49061140 |
gagaaatttccaaaatatatttggaaagttg |
49061170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 571
Target Start/End: Original strand, 9878413 - 9878494
Alignment:
| Q |
491 |
aacttctcaaaccaagctcatgta-cttgtttcagactatggaaggctttcttcaacttacacacttcccctttattatgag |
571 |
Q |
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||||||||||||||||||| | | ||||||||||||| | || | ||||| ||||||||||||||||||| |||||||| |
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| T |
9878413 |
aacttctcaaaccaagctcgcggagcttgtttcagactgtataaaaccttctttaacttacacacttccccttgattatgag |
9878494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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