View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17842_low_4 (Length: 692)

Name: NF17842_low_4
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17842_low_4
NF17842_low_4
[»] chr4 (14 HSPs)
chr4 (18-411)||(10483962-10484369)
chr4 (222-471)||(10470294-10470543)
chr4 (18-218)||(10470039-10470250)
chr4 (18-128)||(40789349-40789459)
chr4 (67-219)||(5203944-5204110)
chr4 (243-409)||(38224312-38224478)
chr4 (222-470)||(5204153-5204402)
chr4 (231-423)||(51303192-51303384)
chr4 (37-134)||(51302943-51303041)
chr4 (297-398)||(38945514-38945615)
chr4 (158-211)||(40789097-40789150)
chr4 (17-94)||(46762864-46762941)
chr4 (144-208)||(9536637-9536701)
chr4 (39-111)||(38224664-38224736)
[»] chr2 (7 HSPs)
chr2 (510-670)||(32978550-32978710)
chr2 (18-218)||(35060863-35061077)
chr2 (222-366)||(35061121-35061265)
chr2 (17-107)||(3276057-3276147)
chr2 (377-471)||(35061487-35061582)
chr2 (144-215)||(43111769-43111840)
chr2 (238-294)||(43111903-43111959)
[»] chr7 (2 HSPs)
chr7 (26-110)||(29339769-29339853)
chr7 (257-293)||(29339599-29339635)
[»] chr1 (1 HSPs)
chr1 (297-372)||(1929131-1929206)
[»] chr8 (1 HSPs)
chr8 (37-110)||(18888905-18888978)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 10483962 - 10484369
Alignment:
Q  18 atcatgacgaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgttgcattg 117  Q
    |||||||||||||||||||||||||||| ||||| || |||||  |||||||||||| ||||||||||| |||||||||||||||||||  |||||||||    
T  10483962 atcatgacgaagaagttccacatcagaagaagcttcaggctttgccatgtagtctgcccaatggttcccttctctaagagtgtgagaaattgttgcattg 10484061  T
Q  118 gtttgttgaagcatt------------tggatgagaa--acatagatatggtatctctcaatgggaccattaataaggttgatacaagcaagagaatcag 203  Q
     ||||||||||||||            ||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10484062 atttgttgaagcattggttttatctcttggatgagaacaacagagatatggtatctctcaatgggaccattaataaggttgatacaagcaagagaatcag 10484161  T
Q  204 aatagcaagcaagttcacagcataaagctcacctagcaggatgtcatttgaacctggaataaaaccggagaagcccgcaaggaataaacctatgtcatta 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10484162 aatagcaagcaagttcacagcataaagctcacctagcaggatgtcatttgaacctggaataaaaccggagaagcccgcaaggaataaacctgtgtcatta 10484261  T
Q  304 cgcaagaccccaccaaactcaattttaataggagtaccatgataactaccatccacattaagaataacatctttaaaattattattgttccatctcttgt 403  Q
    ||||||||||||||||||||  || ||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10484262 cgcaagaccccaccaaactcggttctaacaggagtaccatgatagctaccatccacattaagaataacatctgtaaaattattattgttccatctcttgt 10484361  T
Q  404 acctgtca 411  Q
    ||||||||    
T  10484362 acctgtca 10484369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 222 - 471
Target Start/End: Original strand, 10470294 - 10470543
Alignment:
Q  222 agcataaagctcacctagcaggatgtcatttgaacctggaataaaaccggagaagcccgcaaggaataaacctatgtcattacgcaagaccccaccaaac 321  Q
    |||| ||||||||||||  ||| ||| || ||||||||||||||||||||||||||||||||| |||||| ||  |||||||| |||||||| |||||||    
T  10470294 agcagaaagctcacctaatagggtgtaatctgaacctggaataaaaccggagaagcccgcaagaaataaatctgcgtcattacacaagacccgaccaaac 10470393  T
Q  322 tcaattttaataggagtaccatgataactaccatccacattaagaataacatctttaaaattattattgttccatctcttgtacctgtcactcgtaacag 421  Q
     |  || ||| ||||||||||||| | ||| ||||||||||||||||||||  | ||||||||||||||||||||||  ||||||||||| |||||||||    
T  10470394 ccgtttctaacaggagtaccatgagagctatcatccacattaagaataacacttgtaaaattattattgttccatctgatgtacctgtcagtcgtaacag 10470493  T
Q  422 caggagtaggagtagaaaagtttattacaatgcactcaatagaatttttt 471  Q
    ||  ||||  |||||||||||| |||||||||||||||||||||||||||    
T  10470494 cataagtataagtagaaaagttgattacaatgcactcaatagaatttttt 10470543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 10470039 - 10470250
Alignment:
Q  18 atcatgacgaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgttgcattg 117  Q
    ||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10470039 atcatgacgaagaagttccacatcagaa---gctccgagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgttggattg 10470135  T
Q  118 gtttgttgaagcat------------ttggatgagaa--acatagatatggtatctctcaatgggaccattaataaggttgatacaagcaagagaatcag 203  Q
    ||||||||||||||            |||||||||||  |||||||||||||||||| | ||||||||||||||||||||||  ||||||||||||||||    
T  10470136 gtttgttgaagcatttgttttatctcttggatgagaaccacatagatatggtatctcacgatgggaccattaataaggttgacgcaagcaagagaatcag 10470235  T
Q  204 aatagcaagcaagtt 218  Q
    |||||||||||||||    
T  10470236 aatagcaagcaagtt 10470250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 40789459 - 40789349
Alignment:
Q  18 atcatgacgaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgttgcattg 117  Q
    ||||||| ||||||||||||||| |||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||  ||||    
T  40789459 atcatgaagaagaagttccacattagaagaagcttcaagctttgccatgtagtctgcacaatggttcccctctctaagagtgcgagaaaccgttagattg 40789360  T
Q  118 gtttgttgaag 128  Q
    |||||||||||    
T  40789359 gtttgttgaag 40789349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 67 - 219
Target Start/End: Original strand, 5203944 - 5204110
Alignment:
Q  67 tagtctgcacaatggttcccctctctaagagtgtgagaaaccgttgcattggtttgttgaagcat------------ttggatgaga--aacatagatat 152  Q
    |||| |||||| || |||||||||||||||||||||||||||||| ||||| |||||||||||||            ||| |||| |  | |||||||||    
T  5203944 tagtttgcacattgattcccctctctaagagtgtgagaaaccgttacattgatttgttgaagcatttgttttatgtcttgtatgataacagcatagatat 5204043  T
Q  153 ggtatctctcaatgggaccattaataaggttgatacaagcaagagaatcagaatagcaagcaagttc 219  Q
    || | ||||||||||| ||||  ||||||||||| ||||||||||||||||||||||||| ||||||    
T  5204044 ggaacctctcaatggggccatatataaggttgatgcaagcaagagaatcagaatagcaagaaagttc 5204110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 243 - 409
Target Start/End: Complemental strand, 38224478 - 38224312
Alignment:
Q  243 gatgtcatttgaacctggaataaaaccggagaagcccgcaaggaataaacctatgtcattacgcaagaccccaccaaactcaattt-taataggagtacc 341  Q
    |||||||  ||| |||||||| ||||| ||||| ||||||| ||||| ||||  |||||| |||||||| |||||||| |||| || ||||||||||  |    
T  38224478 gatgtcaaatgatcctggaatgaaaccagagaaacccgcaatgaatatacctgagtcattgcgcaagactccaccaaa-tcaagttctaataggagtgtc 38224380  T
Q  342 atgataactaccatccacattaagaataacatctttaaaattattattgttccatctcttgtacctgt 409  Q
    ||| |||||||||||||||||||||||| || |   || ||||||||| ||||||||  |||||||||    
T  38224379 atgctaactaccatccacattaagaatagcacccgaaatattattattattccatctgatgtacctgt 38224312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 222 - 470
Target Start/End: Original strand, 5204153 - 5204402
Alignment:
Q  222 agcataaagctcacctagcaggatgtcatttgaacctggaataaaaccggagaagcccgcaaggaataaacctatgtcattacgcaagaccccaccaaac 321  Q
    |||| |||| |||||||||| |||||||| ||||||||||||  |||  |||||||| | |||||||| ||||   | | |||||||||| |||||||||    
T  5204153 agcagaaagatcacctagcaagatgtcatctgaacctggaatccaactagagaagcctgaaaggaatatacctgcatgagtacgcaagactccaccaaac 5204252  T
Q  322 tcaattttaataggagtaccatgataactaccatccacattaagaataacatctttaaaattattatt-gttccatctcttgtacctgtcactcgtaaca 420  Q
     |  |||| ||||||| ||| ||  |||| |||||||||||||||||| || ||  |||||| |||||  ||||||||  ||||||||| | | |||| |    
T  5204253 ccggttttgataggagaaccgtggcaacttccatccacattaagaatagcacctgaaaaattgttattatttccatctaatgtacctgttagttgtaaaa 5204352  T
Q  421 gcaggagtaggagtagaaaagtttattacaatgcactcaatagaattttt 470  Q
    |||| || || ||  ||| |||| ||||||||||  ||||| ||||||||    
T  5204353 gcagaagcagaaggtgaatagttgattacaatgctttcaatcgaattttt 5204402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 231 - 423
Target Start/End: Original strand, 51303192 - 51303384
Alignment:
Q  231 ctcacctagcaggatgtcatttgaacctggaataaaaccggagaagcccgcaaggaataaacctatgtcattacgcaagaccccaccaaactcaatttta 330  Q
    ||||||||||| |||||||| ||||||||||||  |||   |||||| |  |||||||| ||||   |||  ||||||||| ||||||||| |  |||||    
T  51303192 ctcacctagcaagatgtcatatgaacctggaatgcaactaaagaagcacaaaaggaatatacctgcatcagcacgcaagactccaccaaacccggtttta 51303291  T
Q  331 ataggagtaccatgataactaccatccacattaagaataacatctttaaaattattattgttccatctcttgtacctgtcactcgtaacagca 423  Q
    || |||| |||| || |||| |||||||||||||||||| || ||  |||||| ||||  ||||||||  ||||||||| | | |||||||||    
T  51303292 attggagaaccaagacaacttccatccacattaagaatagcacctgaaaaattgttatctttccatctgatgtacctgttagttgtaacagca 51303384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 37 - 134
Target Start/End: Original strand, 51302943 - 51303041
Alignment:
Q  37 acatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctct-aagagtgtgagaaaccgttgcattggtttgttgaagcatttg 134  Q
    |||||| || ||||| |||||||| |||| ||||||||||| || ||| ||||||| ||||||||||||||||||| |||||  ||| |||||||||||    
T  51302943 acatcataagaagcttcaagctttgtcatatagtctgcacattgattctcctctcttaagagtgtgagaaaccgttacattgagttgatgaagcatttg 51303041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 297 - 398
Target Start/End: Complemental strand, 38945615 - 38945514
Alignment:
Q  297 gtcattacgcaagaccccaccaaactcaattttaataggagtaccatgataactaccatccacattaagaataacatctttaaaattattattgttccat 396  Q
    ||||||||||||||| |||||||||||  || ||||| ||||  ||||  ||||||||||||||||||||||| || ||  || ||||||||| ||||||    
T  38945615 gtcattacgcaagactccaccaaactcggttctaatatgagtgtcatggcaactaccatccacattaagaatagcacctgaaatattattattattccat 38945516  T
Q  397 ct 398  Q
    ||    
T  38945515 ct 38945514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 40789150 - 40789097
Alignment:
Q  158 ctctcaatgggaccattaataaggttgatacaagcaagagaatcagaatagcaa 211  Q
    ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  40789150 ctctcaatggggccattaataaagttgatgcaagcaagagaatcagaatagcaa 40789097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 46762941 - 46762864
Alignment:
Q  17 aatcatgacgaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaa 94  Q
    |||||||| ||||||| || | |||||||  ||||| ||||||| |||||||||||||||| || || ||||| ||||    
T  46762941 aatcatgaagaagaagctcaatatcagaagcagctctaagctttatcatgtagtctgcacattgatttccctcactaa 46762864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 9536701 - 9536637
Alignment:
Q  144 catagatatggtatctctcaatgggaccattaataaggttgatacaagcaagagaatcagaatag 208  Q
    |||| |||||||| || |||||||| ||||||||||| |  || ||| |||||||||||||||||    
T  9536701 catatatatggtacctttcaatggggccattaataagataaatgcaaacaagagaatcagaatag 9536637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 38224736 - 38224664
Alignment:
Q  39 atcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgtt 111  Q
    ||||||| |||||| |||||||  |||  |||||||||| || ||   |||||||||||||||||||||||||    
T  38224736 atcagaagaagctctaagctttgccattaagtctgcacactgatttttctctctaagagtgtgagaaaccgtt 38224664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 153; Significance: 1e-80; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 510 - 670
Target Start/End: Complemental strand, 32978710 - 32978550
Alignment:
Q  510 acggaggtatgcctcgtatatgtatgttgggttgcgatagccggtacatgtgtatttttgtaaattggactgtatcatagtatttgaacacaagttgtaa 609  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32978710 acggaggtatgcctcgtatatgtatgttgggttgcgatagacggtacatgtgtatttttgtaaattggactgtatcatagtatttcaacacaagttgtaa 32978611  T
Q  610 aatgtaattaaacttgaatgatatatataaacatattgcagctactctatagatggagacg 670  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32978610 aatgtaattaaacttgaatgatatatataaacatattgcagctactctatagatggagacg 32978550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 35060863 - 35061077
Alignment:
Q  18 atcatgacgaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgttgcattg 117  Q
    ||||||| |||| ||||||||||||||| ||||| | | ||||  |||||||| |||||||||||||| ||||||||||||||||||||| ||| |||||    
T  35060863 atcatgaagaaggagttccacatcagaagaagctactaactttgccatgtagtttgcacaatggttcctctctctaagagtgtgagaaactgttacattg 35060962  T
Q  118 gtttgttgaagcat------------ttggatgaga--aacatagatatggtatctctcaatgggaccattaataaggttgatacaagcaagagaatcag 203  Q
    ||||||||||||||            ||||||||||  ||  ||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||    
T  35060963 gtttgttgaagcatttgttttatgtcttggatgagaacaatgtagatatggtacctttcaatgggaccattaataaggttgatgcaagcaagagaatcag 35061062  T
Q  204 aatagcaagcaagtt 218  Q
    |||||||||||||||    
T  35061063 aatagcaagcaagtt 35061077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 222 - 366
Target Start/End: Original strand, 35061121 - 35061265
Alignment:
Q  222 agcataaagctcacctagcaggatgtcatttgaacctggaataaaaccggagaagcccgcaaggaataaacctatgtcattacgcaagaccccaccaaac 321  Q
    |||| ||||||||||||||||||| ||||  ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  35061121 agcagaaagctcacctagcaggatatcatccgaacctggaataaaatcggagaagcctgcaaggaataaacctgtgtcattacgcaagaccccaccaaac 35061220  T
Q  322 tcaattttaataggagtaccatgataactaccatccacattaaga 366  Q
     |  || ||| ||||||||||||| | ||||||||||| ||||||    
T  35061221 ccggttctaacaggagtaccatgacagctaccatccacgttaaga 35061265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 3276147 - 3276057
Alignment:
Q  17 aatcatgacgaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaac 107  Q
    |||||||| |||||||||| ||||||||| |||||||||| |||  ||| || |||||||| || ||| ||||||||| ||||||||||||    
T  3276147 aatcatgaagaagaagttcaacatcagaagaagctccaagttttgccatataatctgcacattgattctcctctctaaaagtgtgagaaac 3276057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 471
Target Start/End: Original strand, 35061487 - 35061582
Alignment:
Q  377 taaaattattattgttccatctcttgtacctgtcactcgtaacagcaggagtaggagta-gaaaagtttattacaatgcactcaatagaatttttt 471  Q
    |||||||||||||||||||| |  ||||||||||| || |||||| || || || || | |||||| ||||||||| || ||||||||||||||||    
T  35061487 taaaattattattgttccatttgatgtacctgtcagtcataacagtagaagcagaaggaggaaaagcttattacaaagctctcaatagaatttttt 35061582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 43111769 - 43111840
Alignment:
Q  144 catagatatggtatctctcaatgggaccattaataaggttgatacaagcaagagaatcagaatagcaagcaa 215  Q
    |||| |||||||| ||||||||||   |||||||||| || || ||| ||||||||||| ||||||||||||    
T  43111769 catatatatggtacctctcaatggagtcattaataagattaatgcaaacaagagaatcacaatagcaagcaa 43111840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 43111903 - 43111959
Alignment:
Q  238 agcaggatgtcatttgaacctggaataaaaccggagaagcccgcaaggaataaacct 294  Q
    |||| |||||||| ||| |||||||||||||  |||||| || ||||||||||||||    
T  43111903 agcaagatgtcatatgagcctggaataaaactagagaagtccacaaggaataaacct 43111959  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 29339853 - 29339769
Alignment:
Q  26 gaagaagttccacatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgt 110  Q
    ||||||| || |||| |||||||| | ||||||||  |||| ||| |||||  || |||||||||||||||| ||||||||||||    
T  29339853 gaagaagatcaacattagaataagattcaagctttgccatgaagtttgcacgctgtttcccctctctaagagcgtgagaaaccgt 29339769  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 29339635 - 29339599
Alignment:
Q  257 ctggaataaaaccggagaagcccgcaaggaataaacc 293  Q
    |||||||||||||  ||||||||||||||||||||||    
T  29339635 ctggaataaaaccatagaagcccgcaaggaataaacc 29339599  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 297 - 372
Target Start/End: Original strand, 1929131 - 1929206
Alignment:
Q  297 gtcattacgcaagaccccaccaaactcaattttaataggagtaccatgataactaccatccacattaagaataaca 372  Q
    ||||||||||||||| |||||| || || || |||||||||| |||    ||||||||||||||||||||| ||||    
T  1929131 gtcattacgcaagactccaccagacccagttctaataggagtgccaacgcaactaccatccacattaagaacaaca 1929206  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 18888905 - 18888978
Alignment:
Q  37 acatcagaataagctccaagctttttcatgtagtctgcacaatggttcccctctctaagagtgtgagaaaccgt 110  Q
    ||||||||| |||||||||| ||  ||||| | |||||||  |||||||| |||||||| || |||||||||||    
T  18888905 acatcagaagaagctccaagtttcatcatgaaatctgcactttggttcccatctctaagcgtatgagaaaccgt 18888978  T

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