View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17842_low_5 (Length: 688)

Name: NF17842_low_5
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17842_low_5
NF17842_low_5
[»] chr5 (1 HSPs)
chr5 (1-688)||(40263515-40264202)
[»] chr3 (10 HSPs)
chr3 (261-294)||(17750282-17750315)
chr3 (261-294)||(19051602-19051635)
chr3 (262-294)||(27908927-27908959)
chr3 (262-294)||(28473274-28473306)
chr3 (262-294)||(28493315-28493347)
chr3 (262-294)||(28514293-28514325)
chr3 (262-294)||(11407923-11407955)
chr3 (262-290)||(27997719-27997747)
chr3 (262-294)||(28046560-28046592)
chr3 (262-294)||(28078533-28078565)
[»] chr4 (2 HSPs)
chr4 (262-294)||(9331208-9331240)
chr4 (262-294)||(9384991-9385023)


Alignment Details
Target: chr5 (Bit Score: 664; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 1 - 688
Target Start/End: Complemental strand, 40264202 - 40263515
Alignment:
Q  1 gtactgagtagttgttatgcatgtatcaagttaagctatgacaatttgacaaagcaagtgtctaaaaatctcttcttattgtgctcaatgtttcctgaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40264202 gtactgagtagttgttatgcatgtatcaagttaagctatgacaatttgacaaagcaagtgtctaaaaatctcttcttattgtgctcaatgtttcctgaag 40264103  T
Q  101 actgggagatcaatgtggaagatttggttaggtacattaagggacttggaccagctgctgggactattggcacaatggagaaagtgaggagagagataca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40264102 actgggagatcaatgtggaagatttggttaggtacattaagggacttggaccagctgctgggactattggcacaatggagaaagtgaggagagagataca 40264003  T
Q  201 agtgaccttgctcatcctcaaagattcatagttgttgcaacaatgtagcaaaaaagaatttgtgaaaatgcatgacttggttcgtgatgcagccttatgg 300  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40264002 agtgaccttgctcatcctcaaagattcatatttgttgcaacaatgtggcaaaaaagaatttgtgaaaatgcatgacttggttcgtgatgcagccttatgg 40263903  T
Q  301 attgcttccaaagaaggtaaagcaattaaggtacctaccaaaacattggcagaaatagaagaaaatgtaaaagagttgactgcaatatccttatggggca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40263902 attgcttccaaagaaggtaaagcaattaaggtacctaccaaaacattggcagaaatagaagaaaatgtaaaagagttgactgcaatatccttatggggca 40263803  T
Q  401 tggagaatcttcctcctgttgatcaattgcagtgcccgaaactcaagactcttctacttcattccgcggacgaatcgtctttacaattaccaaatgcata 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40263802 tggagaatcttcctcctgttgatcaattgcagtgcccgaaactcaagactcttctacttcattccacggacgaatcgtctttacaattaccaaatgcata 40263703  T
Q  501 ttttggaaagatgcaaatgctggaagtcttggggattacaaaattttactacacatggcgcaacttgtacaccctgcgctacttgagttcatcattgtct 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40263702 ttttggaaagatgcaaatgctggaagtcttggggattacaaaattttactacacgtggcgcaacttgtacaccctgcgctacttgagttcatcattgtct 40263603  T
Q  601 atcttagccatgtcacaatcgatggaaagattaaccatgcttcgagatctttgtctaagaggatatgaattaggcgatatctctatac 688  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40263602 atcttagccatgccacaatcgatagaaagattaaccatgcttcgagatctttgtctaagaggatatgaattaggcgatatctctatac 40263515  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 17750315 - 17750282
Alignment:
Q  261 tgtgaaaatgcatgacttggttcgtgatgcagcc 294  Q
    ||||||||||||||||||||||||||||||||||    
T  17750315 tgtgaaaatgcatgacttggttcgtgatgcagcc 17750282  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 19051635 - 19051602
Alignment:
Q  261 tgtgaaaatgcatgacttggttcgtgatgcagcc 294  Q
    ||||||||||||||||||||||||||||||||||    
T  19051635 tgtgaaaatgcatgacttggttcgtgatgcagcc 19051602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 27908927 - 27908959
Alignment:
Q  262 gtgaaaatgcatgacttggttcgtgatgcagcc 294  Q
    |||||||||||||||||||||||||||||||||    
T  27908927 gtgaaaatgcatgacttggttcgtgatgcagcc 27908959  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 28473306 - 28473274
Alignment:
Q  262 gtgaaaatgcatgacttggttcgtgatgcagcc 294  Q
    |||||||||||||||||||||||||||||||||    
T  28473306 gtgaaaatgcatgacttggttcgtgatgcagcc 28473274  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 28493347 - 28493315
Alignment:
Q  262 gtgaaaatgcatgacttggttcgtgatgcagcc 294  Q
    |||||||||||||||||||||||||||||||||    
T  28493347 gtgaaaatgcatgacttggttcgtgatgcagcc 28493315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 28514325 - 28514293
Alignment:
Q  262 gtgaaaatgcatgacttggttcgtgatgcagcc 294  Q
    |||||||||||||||||||||||||||||||||    
T  28514325 gtgaaaatgcatgacttggttcgtgatgcagcc 28514293  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 11407923 - 11407955
Alignment:
Q  262 gtgaaaatgcatgacttggttcgtgatgcagcc 294  Q
    |||||||||||||||||||||||||||| ||||    
T  11407923 gtgaaaatgcatgacttggttcgtgatgtagcc 11407955  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 262 - 290
Target Start/End: Original strand, 27997719 - 27997747
Alignment:
Q  262 gtgaaaatgcatgacttggttcgtgatgc 290  Q
    |||||||||||||||||||||||||||||    
T  27997719 gtgaaaatgcatgacttggttcgtgatgc 27997747  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 28046560 - 28046592
Alignment:
Q  262 gtgaaaatgcatgacttggttcgtgatgcagcc 294  Q
    |||||||||||||||||||||| ||||||||||    
T  28046560 gtgaaaatgcatgacttggttcatgatgcagcc 28046592  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 28078533 - 28078565
Alignment:
Q  262 gtgaaaatgcatgacttggttcgtgatgcagcc 294  Q
    ||||||||||||||||| |||||||||||||||    
T  28078533 gtgaaaatgcatgacttagttcgtgatgcagcc 28078565  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 9331240 - 9331208
Alignment:
Q  262 gtgaaaatgcatgacttggttcgtgatgcagcc 294  Q
    |||||||||||||||||||||||||||||||||    
T  9331240 gtgaaaatgcatgacttggttcgtgatgcagcc 9331208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 9385023 - 9384991
Alignment:
Q  262 gtgaaaatgcatgacttggttcgtgatgcagcc 294  Q
    |||||||||||||||||||||||||||||||||    
T  9385023 gtgaaaatgcatgacttggttcgtgatgcagcc 9384991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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