View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17842_low_7 (Length: 612)

Name: NF17842_low_7
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17842_low_7
NF17842_low_7
[»] chr7 (5 HSPs)
chr7 (255-420)||(41713915-41714078)
chr7 (103-224)||(41714108-41714229)
chr7 (164-222)||(14676352-14676410)
chr7 (164-222)||(45510464-45510522)
chr7 (166-222)||(38138055-38138111)
[»] chr3 (8 HSPs)
chr3 (164-222)||(1132836-1132894)
chr3 (164-225)||(31651343-31651404)
chr3 (166-222)||(3333988-3334044)
chr3 (164-222)||(30697493-30697551)
chr3 (164-222)||(32720983-32721041)
chr3 (180-222)||(53620359-53620401)
chr3 (164-221)||(2984013-2984070)
chr3 (166-218)||(50201692-50201744)
[»] chr4 (3 HSPs)
chr4 (164-225)||(28880113-28880174)
chr4 (164-224)||(8159389-8159449)
chr4 (170-222)||(25056540-25056592)
[»] chr5 (2 HSPs)
chr5 (168-220)||(15917518-15917570)
chr5 (179-222)||(31632971-31633014)
[»] scaffold1763 (1 HSPs)
scaffold1763 (164-222)||(505-563)
[»] chr8 (2 HSPs)
chr8 (164-222)||(3394083-3394141)
chr8 (179-222)||(13258623-13258666)
[»] chr2 (4 HSPs)
chr2 (179-222)||(33206924-33206967)
chr2 (164-222)||(36030915-36030973)
chr2 (176-217)||(13110470-13110511)
chr2 (164-220)||(12941700-12941756)
[»] chr1 (3 HSPs)
chr1 (166-216)||(40136131-40136181)
chr1 (164-222)||(50097736-50097794)
chr1 (164-222)||(52073359-52073417)
[»] chr6 (2 HSPs)
chr6 (164-225)||(8439294-8439354)
chr6 (168-225)||(16329505-16329562)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 4e-49; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 255 - 420
Target Start/End: Complemental strand, 41714078 - 41713915
Alignment:
Q  255 catctcataaagtcttcctttcccattccctgtagtaacatatgttaacagataagacatgcaatacaggggtccagttatgcnnnnnnnnnnncatttg 354  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||| |||||||||||           ||||||    
T  41714078 catctcataaagtcttcctttcccattccctatattaacatatgttaacaaataagacatgcaatacaggg-tccagttatgcaaaaaaaaaa-catttg 41713981  T
Q  355 caaagagtttccctttgcctcaaatatgtttcacgggctaaaacacaaaagtaaataacatcactt 420  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  41713980 caaagagtttccctttgcctcaaatatgtttcacgggccgaaacacaaaagtaaataacatcactt 41713915  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 41714229 - 41714108
Alignment:
Q  103 tatgaagttatgttaaaggacaaccaatgtaattttgcctaatattcttaaaatnnnnnnntatattaaccattaacattaatttaacattctctgcaaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||||    
T  41714229 tatgaagttatgttaaaggacaaccaatgtaattttgcctaatattcttaaaataaaaaaatatattaaccattaacattaatttaacattctctacaaa 41714130  T
Q  203 aatactctttcaaaaaatgtaa 224  Q
    |||||||||| |||||||||||    
T  41714129 aatactcttttaaaaaatgtaa 41714108  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 14676352 - 14676410
Alignment:
Q  164 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 222  Q
    |||||||||||| | |||||||||| ||||| ||  |||| ||||||||||||||||||    
T  14676352 tatattaaccataagcattaatttatcattccctaaaaaattactctttcaaaaaatgt 14676410  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 45510464 - 45510522
Alignment:
Q  164 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 222  Q
    |||||||| ||| |||||||||||| ||||||||  |||| |||||||||| |||||||    
T  45510464 tatattaatcataaacattaatttatcattctctaaaaaattactctttcacaaaatgt 45510522  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 38138055 - 38138111
Alignment:
Q  166 tattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 222  Q
    |||||| ||| | |||||||||| ||||||||  ||||||||||| |||||||||||    
T  38138055 tattaatcataagcattaatttatcattctctaaaaaaatactctatcaaaaaatgt 38138111  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 1132894 - 1132836
Alignment:
Q  164 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 222  Q
    |||||||||||| |||||||||||| ||||||||  |||| ||||||||||||||||||    
T  1132894 tatattaaccatgaacattaatttatcattctctaaaaaattactctttcaaaaaatgt 1132836  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 31651404 - 31651343
Alignment:
Q  164 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgtaaa 225  Q
    |||||||| ||| | |||||||||||||||||||  |||| |||||||||||||||| ||||    
T  31651404 tatattaatcataagcattaatttaacattctctaaaaaattactctttcaaaaaatctaaa 31651343  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 3333988 - 3334044
Alignment:
Q  166 tattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 222  Q
    |||||| ||| |||||||||||| ||||||||  |||||||||||| ||||||||||    
T  3333988 tattaatcataaacattaatttatcattctctaaaaaaatactcttccaaaaaatgt 3334044  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 30697493 - 30697551
Alignment:
Q  164 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 222  Q
    |||||||| ||| ||||||| |||| ||||||||  ||||||| |||||||||||||||    
T  30697493 tatattaatcataaacattagtttatcattctctaaaaaaataatctttcaaaaaatgt 30697551  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 32721041 - 32720983
Alignment:
Q  164 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 222  Q
    |||||||| ||| | |||||||||| || ||||| ||||||||||||||||| ||||||    
T  32721041 tatattaatcataagcattaatttatcactctctacaaaaatactctttcaataaatgt 32720983  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 53620359 - 53620401
Alignment:
Q  180 attaatttaacattctctgcaaaaatactctttcaaaaaatgt 222  Q
    ||||||||| ||||||||  |||||||||||||||||||||||    
T  53620359 attaatttatcattctctaaaaaaatactctttcaaaaaatgt 53620401  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 2984013 - 2984070
Alignment:
Q  164 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatg 221  Q
    |||||||| ||||| ||||||| || ||||||||  |||| |||||||||||||||||    
T  2984013 tatattaatcattagcattaatgtatcattctctaaaaaattactctttcaaaaaatg 2984070  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 50201692 - 50201744
Alignment:
Q  166 tattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaa 218  Q
    |||||| ||| | |||||||||| ||||||||  |||||||||||||||||||    
T  50201692 tattaatcataagcattaatttaccattctctaaaaaaatactctttcaaaaa 50201744  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 28880113 - 28880174
Alignment:
Q  164 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgtaaa 225  Q
    |||||||| ||| |||||||||||| || |||||  ||||||||||||||||||||||||||    
T  28880113 tatattaatcataaacattaatttatcactctctaaaaaaatactctttcaaaaaatgtaaa 28880174  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 8159389 - 8159449
Alignment:
Q  164 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgtaa 224  Q
    |||||| ||||| |||| ||||||| |||| |||  ||||||||| |||||||||||||||    
T  8159389 tatatttaccataaacaataatttatcattttctagaaaaatactttttcaaaaaatgtaa 8159449  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 25056592 - 25056540
Alignment:
Q  170 aaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 222  Q
    |||||| |||||||||||| |||| |||| |||| |||||||| |||||||||    
T  25056592 aaccataaacattaatttatcattatctgaaaaattactcttttaaaaaatgt 25056540  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 15917518 - 15917570
Alignment:
Q  168 ttaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaat 220  Q
    |||||||| |||||||||||| || ||||| ||||||||||||||||||||||    
T  15917518 ttaaccataaacattaatttatcactctctacaaaaatactctttcaaaaaat 15917570  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 31632971 - 31633014
Alignment:
Q  179 cattaatttaacattctctgcaaaaatactctttcaaaaaatgt 222  Q
    |||| ||||| |||||||| ||||||||||||||||||||||||    
T  31632971 cattcatttatcattctctacaaaaatactctttcaaaaaatgt 31633014  T

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Target: scaffold1763 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 563 - 505
Alignment:
Q  164 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 222  Q
    |||||||| ||| |||||||||||||||||||||  |||  ||||||||||||||||||    
T  563 tatattaatcataaacattaatttaacattctctaaaaatttactctttcaaaaaatgt 505  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 3394083 - 3394141
Alignment:
Q  164 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 222  Q
    |||||||| ||| |||||||||||| ||||||||  |||| ||||||||||||||||||    
T  3394083 tatattaatcataaacattaatttatcattctcttaaaaattactctttcaaaaaatgt 3394141  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 13258623 - 13258666
Alignment:
Q  179 cattaatttaacattctctgcaaaaatactctttcaaaaaatgt 222  Q
    |||||||||| ||||||||  |||||||||||||||||||||||    
T  13258623 cattaatttatcattctctaaaaaaatactctttcaaaaaatgt 13258666  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 33206924 - 33206967
Alignment:
Q  179 cattaatttaacattctctgcaaaaatactctttcaaaaaatgt 222  Q
    |||||||||||||||||||  ||||| |||||||||||||||||    
T  33206924 cattaatttaacattctctaaaaaaacactctttcaaaaaatgt 33206967  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 36030915 - 36030973
Alignment:
Q  164 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 222  Q
    |||||||| ||| | |||||||||| ||||||||  |||||||||||||| ||||||||    
T  36030915 tatattaatcataagcattaatttatcattctctaaaaaaatactctttccaaaaatgt 36030973  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 13110470 - 13110511
Alignment:
Q  176 taacattaatttaacattctctgcaaaaatactctttcaaaa 217  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||    
T  13110470 taacatttatttatcattctctgcaaaaatactctatcaaaa 13110511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 12941756 - 12941700
Alignment:
Q  164 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaat 220  Q
    |||||||||||| ||| |||||||| || |||||| ||||||| | |||||||||||    
T  12941756 tatattaaccataaacgttaatttatcactctctgaaaaaatattttttcaaaaaat 12941700  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 40136181 - 40136131
Alignment:
Q  166 tattaaccattaacattaatttaacattctctgcaaaaatactctttcaaa 216  Q
    |||||| ||| |||||||||||| |||||||| |||||||||||| |||||    
T  40136181 tattaatcataaacattaatttatcattctctacaaaaatactctctcaaa 40136131  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 50097736 - 50097794
Alignment:
Q  164 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 222  Q
    |||||||| ||| |||| ||||||| || |||||  |||||||||||||||||||||||    
T  50097736 tatattaatcataaacaataatttatcactctctaaaaaaatactctttcaaaaaatgt 50097794  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 52073417 - 52073359
Alignment:
Q  164 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgt 222  Q
    |||||||| ||| ||| |||||||| ||||||||  |||| ||||||||||||||||||    
T  52073417 tatattaatcataaacgttaatttatcattctctaaaaaattactctttcaaaaaatgt 52073359  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 8439354 - 8439294
Alignment:
Q  164 tatattaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgtaaa 225  Q
    |||||||| ||| |||||||||||| ||||||||  ||||||||| ||||||||||| ||||    
T  8439354 tatattaatcataaacattaatttatcattctct-aaaaaatactttttcaaaaaatataaa 8439294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 225
Target Start/End: Original strand, 16329505 - 16329562
Alignment:
Q  168 ttaaccattaacattaatttaacattctctgcaaaaatactctttcaaaaaatgtaaa 225  Q
    |||| ||||| |||||||||| ||||||||  |||| || ||||||||||||||||||    
T  16329505 ttaatcattagcattaatttatcattctctaaaaaattattctttcaaaaaatgtaaa 16329562  T

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