View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17842_low_9 (Length: 486)
Name: NF17842_low_9
Description: NF17842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17842_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 7 - 472
Target Start/End: Original strand, 35603469 - 35603945
Alignment:
| Q |
7 |
agagagggaaatagtttcgtaggatgtgtccttgttgaagcaatgtcggattttccaaaatgtatgacctgattaaatgcatgctcatggtgaaaatata |
106 |
Q |
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| T |
35603469 |
agagagggaaatagtttcgtaggatgtgtccttgctgaagcaatgtcggattttccaaaatgtatggcctgattaaatgcatgctcatggtgaaaatata |
35603568 |
T |
|
| Q |
107 |
tgtctttgaaactttgagctttcaaagtattggctttgtnnnnnnnnggaaattatcatcaacaaataaaaaatggttgattgatagagtagtgccatag |
206 |
Q |
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| T |
35603569 |
tgtctttgaaactttgagctttcaaagtattggctttgtaaaaaaaaggaaattatcatcaacaaataaaaaatggttgattgatagagtagtgccatag |
35603668 |
T |
|
| Q |
207 |
atactagtctcataaagcttaccctaaatctcgttattttctatgatggccggcaaaccttcggtacatataatatatgagtatggcgagaggggacatc |
306 |
Q |
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| T |
35603669 |
atacgagtctcataaagcttaccctaaatctcgttattttttatgatggccggcaaaccttcggtacatataatatatgagtatggcgagaggggacatc |
35603768 |
T |
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| Q |
307 |
tttgtcggagaactctttcaggagtaattggcccattgtgaacatccattaaaaatgacatgatattctacagtagagatatacatcatcattgaaaaga |
406 |
Q |
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| T |
35603769 |
tttgtcggagaactctttcaggagtaattggtccattgtgaacat-cattaaaaatgacatgatattctacagtagagatacacatcatcatccaaaaga |
35603867 |
T |
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| Q |
407 |
cccactgataaaa------------gagacccatctcattcaagatggattgcaagtaagaccaactcatgatgttaa |
472 |
Q |
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| T |
35603868 |
cccactgttaacatagacccatctcgagacccatctcattcaagatggattgcaagtaagaccaactcatgatgttaa |
35603945 |
T |
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