View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17843_high_1 (Length: 583)
Name: NF17843_high_1
Description: NF17843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17843_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 18 - 583
Target Start/End: Complemental strand, 49934513 - 49933948
Alignment:
| Q |
18 |
atttttcgagacagaaatgaagaattttggaatactcggttagcagacagccttgaaggtttatattcacaaattctagatgttggagaagttagagtgg |
117 |
Q |
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| T |
49934513 |
atttttcgagacagaaatgaagaattttggaatactcggttagcagacagccttgaaggtttatattcacaaattctagatgttggagaagttagagtgg |
49934414 |
T |
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| Q |
118 |
acgccgatataaaagatgggggaatgatgctagtaacagctttatccccttatgctaattggcttcatggaaatgcccatgtcatgcttgaggttggtgt |
217 |
Q |
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| T |
49934413 |
acgccgatataaaagatgggggaatgatgctagtaacagctttatccccttatgctaattggcttcatggaaatgcccatgtcatgcttgaggttggtgt |
49934314 |
T |
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| Q |
218 |
cgtcgatacaattttttcatctaattgtttgattttactcacttctataaatcttgttccatgtattgatttaataggtgagaggcacagttgatcaacc |
317 |
Q |
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| T |
49934313 |
cgtcgatacaattttttcatctaattatttgattttactcacttctataaatcttgttccatgtattgatttaataggtgagaggcacagttgatcaacc |
49934214 |
T |
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| Q |
318 |
attgcttaatggctatgcaatgtttcacagggcgtctatatcttcaccggtgtttcgtaagccactaactggttttggtggtactgtttacatgaaatca |
417 |
Q |
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| T |
49934213 |
attgcttaatggctatgcaatgtttcacagggcgtctatatcttcaccggtgttccgtaagccactaactggttttggtggtactgtttacatgaaatca |
49934114 |
T |
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| Q |
418 |
aacaggttatccatcacctcactggagagtaggctaggcagaaaaggaaaactgcttgtaaaagggaaccttcctctcagaactagtgaagcagcccttg |
517 |
Q |
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| T |
49934113 |
aacaggttatccatcacctcactggagagtaggctaggcagaaaaggaaaactgcttgtaaaagggaaccttcctctcagaactagtgaagcagcccttg |
49934014 |
T |
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| Q |
518 |
atgacaaaattgaattgaagtgcgatgttctagaagtgcatgcgaaaaatattttaaggttgcttt |
583 |
Q |
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| T |
49934013 |
atgacaaaattgaattgaagtgcgatgttctagaagtgcatgcgaaaaatattttaaggttgcttt |
49933948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 44 - 216
Target Start/End: Original strand, 1913926 - 1914098
Alignment:
| Q |
44 |
ttggaatactcggttagcagacagccttgaaggtttatattcacaaattctagatgttggagaagttagagtggacgccgatataaaagatgggggaatg |
143 |
Q |
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| T |
1913926 |
ttggaatactcaattagcagaaagccttaaaggtttaaattggcaaattttagatgctggagaagtcaggattgacgctgatataaaagatgggggaatg |
1914025 |
T |
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| Q |
144 |
atgctagtaacagctttatccccttatgctaattggcttcatggaaatgcccatgtcatgcttgaggttggtg |
216 |
Q |
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| T |
1914026 |
acgttggtaacagctttatctcctcatgccaattggcttcatggtaatgctgatgtcatgcttgaggtgggtg |
1914098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 358 - 554
Target Start/End: Original strand, 1914236 - 1914432
Alignment:
| Q |
358 |
tcttcaccggtgtttcgtaagccactaactggttttggtggtactgtttacatgaaatcaaacaggttatccatcacctcactggagagtaggctaggca |
457 |
Q |
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| T |
1914236 |
tcttcacccgtgttccgaaagccactcaccaactttggtggaactgttaacgtgaaatcaaacaggctatgcatcacatcactagagagtagggtaagca |
1914335 |
T |
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| Q |
458 |
gaaaaggaaaactgcttgtaaaagggaaccttcctctcagaactagtgaagcagcccttgatgacaaaattgaattgaagtgcgatgttctagaagt |
554 |
Q |
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| T |
1914336 |
gaaaaggaaagcttcttgtaaaaggcaacctaccactcagaactagtgaagcagctcctgatgacaagatagaattgaaatgtgaagttttagaagt |
1914432 |
T |
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