View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17843_low_2 (Length: 423)
Name: NF17843_low_2
Description: NF17843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17843_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 59 - 407
Target Start/End: Original strand, 40662578 - 40662925
Alignment:
| Q |
59 |
ctaaatggacacacattcctaaaactaaggttaactacatactccatcaataatacggatcggaaacgggtttggtacagtttacaccgtgcaatagaat |
158 |
Q |
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| T |
40662578 |
ctaaatggacacacattcctaaaactaagggtaactacatactccatcaataatacg-atcggaaacgggtttggtacagtttacaccgtgcaatagaat |
40662676 |
T |
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| Q |
159 |
ccaagatgttgtgttgtagatattttgtgaaatttcaaggctaagagggtagcaaatcacctccaaaaggtaatggttgtataagaatatgaaatgatgc |
258 |
Q |
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| T |
40662677 |
ccaagatgttgtgctgcagatattttgtgaaatttcaaagctaagagggtagcaaatcacctccaaaaggtaatggttgtataagaatatgaaatgatgc |
40662776 |
T |
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| Q |
259 |
ttgaaactatacgaagtcgatagagcaagcccaaattccacctttccatgtttccggcggctgagatcaacatccgagtttcatctcaacaacgttgctg |
358 |
Q |
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| T |
40662777 |
ttgaaactatacgaagtcgatagagcaagcccaaattccacctttccatgtttccggcggctgagatcaacatccgagtttcatctcaacaacgttgctg |
40662876 |
T |
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| Q |
359 |
ctgtggttgaaagatgactgcagaagtgatgtgtcgagaatgatctgtt |
407 |
Q |
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| T |
40662877 |
ctgtggttgaaagatgactgcagaagtgatgtgtcgagaatgatctgtt |
40662925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 40662503 - 40662560
Alignment:
| Q |
16 |
atcttgaaatataaataattcatacataaattgagatcacaagctaaatggacacaca |
73 |
Q |
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| T |
40662503 |
atcttgaactataaataattcatacataaattgagatcacaagctaaatgaacacaca |
40662560 |
T |
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