View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17843_low_3 (Length: 359)
Name: NF17843_low_3
Description: NF17843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17843_low_3 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 41570857 - 41570683
Alignment:
| Q |
20 |
catgtacatgtcacattcttcaaaagggaatcaaatatcatattagcttcaatcaaaatgaaagttcatgaacagaccagttcattgcttttcaagtaat |
119 |
Q |
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| T |
41570857 |
catgtacatgtcacgttcttcaaaagggaatcaaatatcatattagcttcaatcaaaatgaaagttcatgaacagaccagttcattgcttttcaagtaat |
41570758 |
T |
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| Q |
120 |
tattacgatgaaaagtttaagtgtcaaaacttaacacatcaacaccactcaccatcaaagatccatcaactaatg |
194 |
Q |
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| T |
41570757 |
tattacgatgaaaagtttaagtgtcaaaacttaacacatcaacaccactcaccatcaaagatccatcaactaatg |
41570683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 254 - 347
Target Start/End: Complemental strand, 41570618 - 41570525
Alignment:
| Q |
254 |
cttatcctattcgaccttgacattaaccacattattcatttcctctttcttcattttaggtacaataaccttaagcacaccatttttcatctca |
347 |
Q |
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| T |
41570618 |
cttatcctattcgaccttgacattaaccacattattcatttcctctttcttcattttaggtacaataaccttaagcacaccatttttcatctca |
41570525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 253 - 347
Target Start/End: Complemental strand, 35078433 - 35078339
Alignment:
| Q |
253 |
gcttatcctattcgaccttgacattaaccacattattcatttcctctttcttcattttaggtacaataaccttaagcacaccatttttcatctca |
347 |
Q |
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| T |
35078433 |
gcttatcctactcgaccttgacattaatagcatagttccgttcctctttcttaatttttggcacaataaccttaagcacaccatttttcaactca |
35078339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 341
Target Start/End: Complemental strand, 35076089 - 35076014
Alignment:
| Q |
266 |
gaccttgacattaaccacattattcatttcctctttcttcattttaggtacaataaccttaagcacaccatttttc |
341 |
Q |
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| T |
35076089 |
gaccttgactttaatcacttctttcctttcctcttccttaattttaggtacagtaaccttaagcacaccatttttc |
35076014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 264 - 347
Target Start/End: Complemental strand, 247120 - 247037
Alignment:
| Q |
264 |
tcgaccttgacattaaccacattattcatttcctctttcttcattttaggtacaataaccttaagcacaccatttttcatctca |
347 |
Q |
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| T |
247120 |
tcgacattgacattaatcacatcattcctctcctcttccttcatcttaggcacaacaaccttaagcacaccgtttttcatctca |
247037 |
T |
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