View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17843_low_4 (Length: 348)
Name: NF17843_low_4
Description: NF17843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17843_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 21 - 310
Target Start/End: Original strand, 8876985 - 8877274
Alignment:
| Q |
21 |
tccttatatctcttagagctgaaattagcaagctaatcaatacttttgttgtcttctcaccaagtatgatgaacctaaatgtgccacatacaattctaga |
120 |
Q |
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| T |
8876985 |
tccttatatctcttagggctgaaatcagcaagctaatcagtacttttgttgtcttctcaccaagtatgatgaacctgaatgtgccacatacaattctaga |
8877084 |
T |
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| Q |
121 |
gattttgaatacgccgaataattgaagaggtagtcatataaatctttcaaatatatgtgatcatgttaataagcaatttaggaccacttttcgcataaag |
220 |
Q |
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| T |
8877085 |
gattttgaatacgccgaataattgaagtggtagtcatataaatcttgcaaatatatctgaccatgttaataagcaatttaggaccacttttcgcataaag |
8877184 |
T |
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| Q |
221 |
atgtgaatttttgtcactcaatactagcgccagagcaaggtagagaaccccacgtttatgcctgatgactatcacaatcgttaaatttgc |
310 |
Q |
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| T |
8877185 |
atgtgaatttttgtcactcaaaactagctccagagcaaggtagagaaccccacgtttatgcctgatgactatcacaatcgttaaatttgc |
8877274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 33695812 - 33695913
Alignment:
| Q |
38 |
gctgaaattagcaagctaatcaatacttttgttgtcttctcaccaagtatgatgaacctaaatgtgccacatacaattctagagattttgaatacgccga |
137 |
Q |
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|||||| || |||||| |||||| |||| |||||||||||| | |||| |||||||||| ||| |||| ||| |||| | | ||||||||||||| || |
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| T |
33695812 |
gctgaagttggcaagccaatcaacacttctgttgtcttctctcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgctga |
33695911 |
T |
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| Q |
138 |
at |
139 |
Q |
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|| |
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| T |
33695912 |
at |
33695913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 41550044 - 41550112
Alignment:
| Q |
38 |
gctgaaattagcaagctaatcaatacttttgttgtcttctcaccaagtatgatgaacctaaatgtgcca |
106 |
Q |
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|||||||||||||||| |||| ||||||| ||| |||| ||||||||||||||||| || |||||| |
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| T |
41550044 |
gctgaaattagcaagccaatcggtacttttattgctctctcgccaagtatgatgaacctcaacgtgcca |
41550112 |
T |
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