View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_high_11 (Length: 491)
Name: NF17844_high_11
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 311 - 473
Target Start/End: Complemental strand, 45076964 - 45076805
Alignment:
| Q |
311 |
ttcagtttgttcttcttcggagacgactctgcttgaactccacatcggtacgctgctcaactcaaatatgattatgtttatctcatcaacttctcctcca |
410 |
Q |
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| T |
45076964 |
ttcagtttgttcttcttcggagacgactctgcttgaactccacatcggtacgctgctcaactcaaatatgattatgtttatctcatcaacttctcctc-- |
45076867 |
T |
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| Q |
411 |
gaactttaaacctttcttatcaaacttcacatcaaattaagttttataactaagtatttattt |
473 |
Q |
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| T |
45076866 |
-aactttaaacctttcttatcaaacttcacatcaaattaagttttctaactaagtatttattt |
45076805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 45077276 - 45077171
Alignment:
| Q |
10 |
aagaaaatgctgaataaaagaaccacaaaactgacaaaaatccgcatatgtcatgtgatttggtactcccaaaacacacgccaatggcttccgtccaacc |
109 |
Q |
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| T |
45077276 |
aagaatatgctgaataaaagaaccacaaaactgacaaaaatcagcatatgtcatgtgatttggtactcccaaaacacacgccaatggcttccgtccaacc |
45077177 |
T |
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| Q |
110 |
taattc |
115 |
Q |
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|||||| |
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| T |
45077176 |
taattc |
45077171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 45077094 - 45077004
Alignment:
| Q |
181 |
catgattgatcatgcttaccggaagagaaggagggttttgttcggggaagacatgcatgaggccgcgagtttcttcgattctagggtttcc |
271 |
Q |
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| T |
45077094 |
catgattgatcatgcttaccggaagagaaggaggggtttgttcggggaagacatgcatgaggccgcgagtttcttcgattctagggtttcc |
45077004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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