View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_high_12 (Length: 490)
Name: NF17844_high_12
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 26 - 397
Target Start/End: Complemental strand, 48857599 - 48857234
Alignment:
| Q |
26 |
atatagaatacattcaccgtaagagtgtattgctgcctaggctaagcttaattcaggtgttgttgagggcgagggatcccagattgggtgtaaagnnnnn |
125 |
Q |
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| T |
48857599 |
atatagaatacattcaccgtaagagtgtattgctgcctaggctaggcttaattcaggtgttgttgagggcgagggatcccagattgggtgtaaagaaaaa |
48857500 |
T |
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| Q |
126 |
nntaggttattcatagttcttttagaatcaaggttggaaaacttatcatttgattttaaaatctttgtggtgattatatcaaaccttcatnnnnnnnnnn |
225 |
Q |
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| T |
48857499 |
aataggttattcatagttcttttagaatcaaggttggaaaacttatcatttgattttaaaatctttgtggtgattatatcaaaccttcataaaaaataaa |
48857400 |
T |
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| Q |
226 |
nnnnnnnnctttttgtagtgatcattagatcaaaccttcatagaagctgtccatgcttatttttagaaaaggaaagaaagnnnnnnnnncatgttcatat |
325 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
48857399 |
aataaaaactttttgcagtgatcattagatcaaaccttcatagaagctgtccatgcttatttttagaaaaggaaaaaaa--------aaaatgttcatat |
48857308 |
T |
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| Q |
326 |
tacgcattagttaaattaaggaaaatattgtaacttattagttacttaa--gggggagaaagaaaaagagtttt |
397 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48857307 |
tatgcattagttaaattaaggaaaatattgtaacttattagttacttaaaggggggagaaagaaaaagagtttt |
48857234 |
T |
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