View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17844_high_13 (Length: 481)

Name: NF17844_high_13
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17844_high_13
NF17844_high_13
[»] chr6 (15 HSPs)
chr6 (352-476)||(6615644-6615768)
chr6 (17-113)||(6615343-6615439)
chr6 (256-332)||(6615439-6615515)
chr6 (120-238)||(26669640-26669758)
chr6 (135-223)||(6455464-6455552)
chr6 (143-238)||(34524871-34524966)
chr6 (144-238)||(8309160-8309254)
chr6 (135-238)||(30833013-30833116)
chr6 (363-408)||(6606571-6606616)
chr6 (148-233)||(9422834-9422919)
chr6 (144-233)||(24256917-24257006)
chr6 (143-238)||(17305512-17305608)
chr6 (150-231)||(20858394-20858475)
chr6 (205-238)||(34883736-34883769)
chr6 (144-224)||(8253596-8253675)
[»] chr7 (15 HSPs)
chr7 (143-231)||(35195846-35195934)
chr7 (120-233)||(38328548-38328660)
chr7 (128-233)||(44409202-44409306)
chr7 (144-238)||(7392311-7392405)
chr7 (143-229)||(10020473-10020559)
chr7 (119-233)||(43712293-43712407)
chr7 (144-233)||(41012586-41012675)
chr7 (145-233)||(1513488-1513576)
chr7 (145-244)||(1649142-1649241)
chr7 (144-238)||(38032859-38032954)
chr7 (167-233)||(25818287-25818353)
chr7 (181-231)||(35498401-35498451)
chr7 (150-238)||(21285364-21285453)
chr7 (192-233)||(32814828-32814869)
chr7 (146-230)||(24427367-24427451)
[»] chr4 (14 HSPs)
chr4 (144-233)||(56865-56954)
chr4 (143-238)||(49039449-49039544)
chr4 (144-238)||(54854184-54854278)
chr4 (109-233)||(20610740-20610864)
chr4 (144-233)||(4419691-4419780)
chr4 (172-233)||(27921897-27921958)
chr4 (150-238)||(36008270-36008359)
chr4 (136-233)||(42758161-42758257)
chr4 (143-229)||(12585563-12585649)
chr4 (144-238)||(29785146-29785240)
chr4 (135-231)||(48991864-48991958)
chr4 (144-233)||(49319394-49319483)
chr4 (174-238)||(41492533-41492597)
chr4 (120-232)||(49743364-49743476)
[»] chr3 (19 HSPs)
chr3 (128-233)||(4010007-4010112)
chr3 (145-233)||(3973303-3973391)
chr3 (145-233)||(3996485-3996573)
chr3 (143-238)||(24130555-24130650)
chr3 (143-233)||(31108764-31108854)
chr3 (144-233)||(36842163-36842252)
chr3 (143-233)||(40160736-40160826)
chr3 (120-238)||(40956668-40956786)
chr3 (144-233)||(28951867-28951956)
chr3 (150-238)||(47191368-47191457)
chr3 (202-233)||(23305747-23305778)
chr3 (150-233)||(33206758-33206841)
chr3 (167-233)||(3461752-3461818)
chr3 (153-238)||(14868680-14868766)
chr3 (135-225)||(34407086-34407176)
chr3 (192-238)||(41430834-41430880)
chr3 (128-233)||(3993696-3993801)
chr3 (274-327)||(27153111-27153166)
chr3 (149-233)||(49639029-49639113)
[»] chr1 (20 HSPs)
chr1 (143-227)||(50199480-50199564)
chr1 (143-244)||(9768813-9768914)
chr1 (143-238)||(18003812-18003907)
chr1 (143-233)||(1721141-1721231)
chr1 (119-233)||(9769560-9769674)
chr1 (135-228)||(2903023-2903116)
chr1 (143-230)||(3341740-3341827)
chr1 (135-210)||(35424164-35424239)
chr1 (108-238)||(18179324-18179454)
chr1 (173-238)||(7906360-7906425)
chr1 (153-233)||(52833120-52833201)
chr1 (150-238)||(9931083-9931171)
chr1 (128-232)||(23750152-23750256)
chr1 (184-238)||(33176148-33176202)
chr1 (128-233)||(195045-195150)
chr1 (192-233)||(28417331-28417372)
chr1 (144-233)||(43020612-43020701)
chr1 (173-233)||(20357461-20357521)
chr1 (173-233)||(20562434-20562494)
chr1 (144-240)||(33694536-33694632)
[»] scaffold0119 (1 HSPs)
scaffold0119 (120-238)||(1035-1153)
[»] chr2 (12 HSPs)
chr2 (119-238)||(44487747-44487866)
chr2 (143-233)||(39334885-39334975)
chr2 (150-233)||(7086254-7086337)
chr2 (144-233)||(18065255-18065344)
chr2 (150-233)||(22297463-22297546)
chr2 (135-233)||(5029096-5029194)
chr2 (150-243)||(11133066-11133160)
chr2 (135-233)||(39118394-39118492)
chr2 (144-233)||(14307699-14307788)
chr2 (150-231)||(19064903-19064984)
chr2 (129-233)||(36386104-36386207)
chr2 (136-228)||(40471159-40471251)
[»] chr8 (6 HSPs)
chr8 (145-233)||(17467279-17467366)
chr8 (147-244)||(25470854-25470951)
chr8 (150-233)||(10970267-10970350)
chr8 (143-233)||(26657857-26657948)
chr8 (153-238)||(2696528-2696614)
chr8 (143-233)||(7345429-7345519)
[»] chr5 (3 HSPs)
chr5 (145-238)||(28537131-28537224)
chr5 (135-224)||(34325275-34325364)
chr5 (120-242)||(18101930-18102052)
[»] scaffold0054 (1 HSPs)
scaffold0054 (144-233)||(67162-67251)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 352 - 476
Target Start/End: Original strand, 6615644 - 6615768
Alignment:
Q  352 taggcataatacatacaacaatggaagttacaagtccaattaccttaaaattttcaaaattcttaatcatggtactatttgcatttgaggttagagagac 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6615644 taggcataatacatacaacaatggaagttacaagtccaattaccttaaaattttcaatattcttaatcatggtactatttgcatttgaggttagagagac 6615743  T
Q  452 tttatcttcattttttgttcctagt 476  Q
    ||||||| |||||||||||||||||    
T  6615744 tttatctgcattttttgttcctagt 6615768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 6615343 - 6615439
Alignment:
Q  17 tcacaaaataggaaataattcaaaaataattcgcacaactaagccaaattatttcgttgacaaaattcagagaggtccttgttcaaatccttttttc 113  Q
    ||||||||||| ||||||||||||||||||||||  || |||||||| ||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  6615343 tcacaaaatagaaaataattcaaaaataattcgccaaattaagccaatttatttcgttgacaaaattgagagaggtccttgaacaaatccttttttc 6615439  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 6615439 - 6615515
Alignment:
Q  256 cctgccacaattttattacccttactgagctccatattggcggaaataaatttccatttaatttcataaaaggcaaa 332  Q
    ||||||||| || ||||||||||  |||||||||||||||| ||||||||||||||||||||||  |||||||||||    
T  6615439 cctgccacacttgtattacccttgatgagctccatattggctgaaataaatttccatttaattttttaaaaggcaaa 6615515  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 26669640 - 26669758
Alignment:
Q  120 gtagtttcgtggttcgaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaa 219  Q
    ||||||| |||| | ||||||  |||||||||||||||||| | || |||  ||||||| || |||||||| | ||| |||  |||||||||||||||||    
T  26669640 gtagtttagtggctagaattcacctttttcaaggtgaataagtggggtgtctggggttcgaaccccagcccctacatataattatgcatgtccctaccaa 26669739  T
Q  220 ctgagttatgctcaggggg 238  Q
    ||||| |||||||| ||||    
T  26669740 ctgagctatgctcacgggg 26669758  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 6455552 - 6455464
Alignment:
Q  135 gaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactga 223  Q
    |||||| ||||||||||||||||||| | || ||| ||| |||| || |||||||||| ||| ||| |||| |||||||||||||||||    
T  6455552 gaattcatctttttcaaggtgaataagtagggtgtccggagttcgaaccccagcccatacatataataatgtatgtccctaccaactga 6455464  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 34524966 - 34524871
Alignment:
Q  143 ctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggg 238  Q
    ||||||| |||||||||| | || ||||||||| || || ||| |||| ||||| ||| ||||||||||||| ||||||||| |||||||| ||||    
T  34524966 ctttttccaggtgaataagtggggtgttcggggctcgaaccccggcccctgcatataacaatgcatgtccctgccaactgagctatgctcacgggg 34524871  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 8309254 - 8309160
Alignment:
Q  144 tttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggg 238  Q
    ||||||||||||||||  | || ||| |||||||| ||||   |||||||||| ||| ||||||||||||| ||||||||| |||||||| ||||    
T  8309254 tttttcaaggtgaataggtggggtgtccggggttcgaaacttggcccatgcatataacaatgcatgtccctgccaactgagctatgctcatgggg 8309160  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 238
Target Start/End: Complemental strand, 30833116 - 30833013
Alignment:
Q  135 gaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcag 234  Q
    ||||||| ||||||||||| |||||| | || ||| |||||||| || |||  ||| ||||| ||| ||||||||||||| ||||||||  ||||||||     
T  30833116 gaattctcctttttcaaggagaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtccctgccaactgaactatgctcat 30833017  T
Q  235 gggg 238  Q
    ||||    
T  30833016 gggg 30833013  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 408
Target Start/End: Original strand, 6606571 - 6606616
Alignment:
Q  363 catacaacaatggaagttacaagtccaattaccttaaaattttcaa 408  Q
    ||||||||||||| |||| ||||| |||||||||||||||||||||    
T  6606571 catacaacaatggcagttccaagttcaattaccttaaaattttcaa 6606616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 9422919 - 9422834
Alignment:
Q  148 tcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||||||||||| | || ||| ||| |||| || |||||| | || || ||| ||||||||||||| ||||||||||||||||||    
T  9422919 tcaaggtgaataagtggggtgtccggtgttcgaaccccagctcttgtatataacaatgcatgtccctgccaactgagttatgctca 9422834  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 24257006 - 24256917
Alignment:
Q  144 tttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||||||||||||||| | || | | |||||||| || | | |||| ||||| ||| |||||||||| ||||||||||| |||||||||    
T  24257006 tttttcaaggtgaataagtggggtatccggggttcgaacctcggcccctgcatataataatgcatgtctctaccaactgacttatgctca 24256917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 17305608 - 17305512
Alignment:
Q  143 ctttttcaaggtgaataaattggatgttcggggttccaaacccagccca-tgcatttaagaatgcatgtccctaccaactgagttatgctcaggggg 238  Q
    |||||||||||||||||| | || ||| | || ||| || ||| ||||  ||||| ||| |||||||||||||||||||||||||||| ||| ||||    
T  17305608 ctttttcaaggtgaataagtggggtgtccaggattcgaacccctgccccctgcatataataatgcatgtccctaccaactgagttatgttcacgggg 17305512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 20858394 - 20858475
Alignment:
Q  150 aaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgct 231  Q
    ||||| ||||||| || ||| |||  ||| || |||| ||| ||||| ||| ||||||||||||| ||||||||||||||||    
T  20858394 aaggtaaataaatggggtgtccggaattcgaaccccaacccctgcatataacaatgcatgtccctgccaactgagttatgct 20858475  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 34883769 - 34883736
Alignment:
Q  205 gcatgtccctaccaactgagttatgctcaggggg 238  Q
    ||||||||||||||||||||||||||||| ||||    
T  34883769 gcatgtccctaccaactgagttatgctcacgggg 34883736  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 8253596 - 8253675
Alignment:
Q  144 tttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgag 224  Q
    ||||||||||||||||| | || ||| | |||||| || |||||||| ||||| ||| ||||||||||| | |||||||||    
T  8253596 tttttcaaggtgaataagtggggtgt-ctgggttcgaaccccagcccctgcatataacaatgcatgtccatgccaactgag 8253675  T

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Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 35195934 - 35195846
Alignment:
Q  143 ctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgct 231  Q
    |||||||||||||||||||| || |||||||||||| || ||| |||| ||||| ||| ||||||||||||| ||||||||| ||||||    
T  35195934 ctttttcaaggtgaataaatggggtgttcggggttcgaaccccggcccctgcatataataatgcatgtccctgccaactgagctatgct 35195846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 233
Target Start/End: Original strand, 38328548 - 38328660
Alignment:
Q  120 gtagtttcgtggttcgaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaa 219  Q
    ||||||| |||||| |||||   |||||||||||||||||||| || |||| ||||||| ||  |||| || ||||| ||| |||| |||||||||||||    
T  38328548 gtagtttagtggttagaattaacctttttcaaggtgaataaatggggtgtttggggttcgaactccagtcc-tgcatataacaatgtatgtccctaccaa 38328646  T
Q  220 ctgagttatgctca 233  Q
     |||| ||||||||    
T  38328647 ttgagctatgctca 38328660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 44409306 - 44409202
Alignment:
Q  128 gtggttcgaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagtta 227  Q
    |||||| ||||||  |||||||||||||||||| | || |||||||| ||| || |||  ||| ||||| ||| ||||||||||||| | ||||||||||    
T  44409306 gtggttagaattcacctttttcaaggtgaataagtggggtgttcggg-ttcgaaccccgacccttgcatataataatgcatgtccctgctaactgagtta 44409208  T
Q  228 tgctca 233  Q
    ||||||    
T  44409207 tgctca 44409202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 7392311 - 7392405
Alignment:
Q  144 tttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggg 238  Q
    ||||||||||||||||| | || |||||||||||| || |||| ||  ||||| ||| ||||||||| ||| |||| |||| |||||||| ||||    
T  7392311 tttttcaaggtgaataagtggggtgttcggggttcaaaccccaacctctgcatataacaatgcatgttcctgccaattgagctatgctcacgggg 7392405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 229
Target Start/End: Original strand, 10020473 - 10020559
Alignment:
Q  143 ctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatg 229  Q
    |||||||||| ||||||| | || |||||||||||| || |||| ||| ||||| ||| |||||||||||||  |||||||| ||||    
T  10020473 ctttttcaagatgaataagtgggttgttcggggttcgaaccccaacccctgcatataacaatgcatgtccctgtcaactgagctatg 10020559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 43712293 - 43712407
Alignment:
Q  119 ggtagtttcgtggttcgaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctacca 218  Q
    |||||||| |||| | ||||||| ||||||||||| | |||| | || | | || ||||| || |||  ||| || || ||| |||||||||||||||||    
T  43712293 ggtagtttagtggctagaattctcctttttcaaggaggataagtggggtatccgaggttcgaaccccgacccctgtatataacaatgcatgtccctacca 43712392  T
Q  219 actgagttatgctca 233  Q
    |||||||||||||||    
T  43712393 actgagttatgctca 43712407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 41012586 - 41012675
Alignment:
Q  144 tttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||| ||||||||||| | ||||||||||||||| |   || |||| | ||| ||| |||||||||||||||||| |||| ||||||||    
T  41012586 ttttttaaggtgaataagtgggatgttcggggttcgagctccggcccctacatataacaatgcatgtccctaccaattgagctatgctca 41012675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 1513576 - 1513488
Alignment:
Q  145 ttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    |||||||||||||||| | || ||||||| |||| || | || ||| | ||| ||| ||||||||||||| |||||||| |||||||||    
T  1513576 ttttcaaggtgaataagtggggtgttcggtgttcgaacctcaacccctacatataacaatgcatgtccctgccaactgatttatgctca 1513488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 1649241 - 1649142
Alignment:
Q  145 ttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggggcacaa 244  Q
    |||||||||||||||| | || ||| | |||||| || ||  |||| |||||  || ||||||| ||||||||||||||| |||||||| |||| |||||    
T  1649241 ttttcaaggtgaataagtggggtgtccagggttcgaaccctggcccctgcataaaacaatgcatatccctaccaactgagctatgctcacggggacacaa 1649142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 38032859 - 38032954
Alignment:
Q  144 tttttcaaggtgaataaattg-gatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggg 238  Q
    |||||||||||||| ||| || | ||| |||||||| || ||| |||| || || ||| ||||||||||||| |||||||||||||| ||| ||||    
T  38032859 tttttcaaggtgaacaaagtgaggtgtccggggttcgaaccccggcccctgtatataacaatgcatgtccctgccaactgagttatgttcacgggg 38032954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 25818353 - 25818287
Alignment:
Q  167 tgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    |||||||||||| ||  ||||||| ||||| ||| |||||||   ||||||||||||||||||||||    
T  25818353 tgttcggggttcgaactccagcccctgcatataataatgcattatcctaccaactgagttatgctca 25818287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 35498451 - 35498401
Alignment:
Q  181 aacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgct 231  Q
    |||||| ||| ||||| ||| ||||||||||||| ||||||||||||||||    
T  35498451 aacccaacccctgcatataataatgcatgtccctgccaactgagttatgct 35498401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 21285364 - 21285453
Alignment:
Q  150 aaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgca-tgtccctaccaactgagttatgctcaggggg 238  Q
    ||||||||||| | || ||| |||||||| || ||| |||| ||||| ||| |||||| ||||||| ||||||||| |||||||| ||||    
T  21285364 aaggtgaataagtggggtgtccggggttcgaaccccggcccctgcatataacaatgcattgtccctgccaactgagctatgctcacgggg 21285453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 32814869 - 32814828
Alignment:
Q  192 tgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||| ||| ||||||||||||||||||||||| ||||||||    
T  32814869 tgcatataataatgcatgtccctaccaactgagctatgctca 32814828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 24427451 - 24427367
Alignment:
Q  146 tttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgc 230  Q
    ||||||||||||||||| || | |||||||||| || |    ||| ||||| ||| |||||||||| || |||||||||||||||    
T  24427451 tttcaaggtgaataaatggggtattcggggttcgaaccttgacccctgcatataacaatgcatgtctctgccaactgagttatgc 24427367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 56865 - 56954
Alignment:
Q  144 tttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||||||||||||||||| || ||||||| |||| ||  || |||| ||||| ||| ||||||||||||| ||||||||||||||||||    
T  56865 tttttcaaggtgaataaatggggtgttcggagttcgaactccggcccttgcatataacaatgcatgtccctgccaactgagttatgctca 56954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 49039449 - 49039544
Alignment:
Q  143 ctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggg 238  Q
    |||||||||||||||||| | || ||| |||||||| || ||||| || ||||| ||| ||||||||||||| ||||||||| |||||||| ||||    
T  49039449 ctttttcaaggtgaataagtggggtgtccggggttcgaaccccagtccctgcatataacaatgcatgtccctgccaactgagctatgctcacgggg 49039544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 54854184 - 54854278
Alignment:
Q  144 tttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggg 238  Q
    ||||||||||||||||| |  ||||| |||||||| || |||||||| ||||| |||  |||||||||||| ||||||||| |||||||| ||||    
T  54854184 tttttcaaggtgaataagtgtgatgtccggggttcgaaccccagcccctgcatataattatgcatgtccctgccaactgagctatgctcacgggg 54854278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 20610864 - 20610740
Alignment:
Q  109 ttttcggtccggtagtttcgtggttcgaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcat 208  Q
    |||| |||| |||||| | |||| | ||||||  |||||| ||||||||||| | |||||| ||| |||| || ||| |||| ||||| ||| |||||||    
T  20610864 tttttggtcaggtagtctagtggctagaattcaccttttttaaggtgaataagtgggatgtccggagttcgaaccccggcccctgcatataacaatgcat 20610765  T
Q  209 gtccctaccaactgagttatgctca 233  Q
    |||||| ||||||||| ||||||||    
T  20610764 gtccctgccaactgagctatgctca 20610740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 4419691 - 4419780
Alignment:
Q  144 tttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    |||||||||||||||||||  | ||||| |||||  || ||| |||| ||||| ||| |||||||||| ||  |||||||||||||||||    
T  4419691 tttttcaaggtgaataaatgaggtgttctgggtttgaaccccggcccctgcatataacaatgcatgtctctgacaactgagttatgctca 4419780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 27921958 - 27921897
Alignment:
Q  172 ggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||||| || ||| |||| ||||| ||| ||||||||||||||||||||||| ||||||||    
T  27921958 ggggttcgaaccccggcccctgcatataataatgcatgtccctaccaactgagctatgctca 27921897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 36008359 - 36008270
Alignment:
Q  150 aaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgca-tgtccctaccaactgagttatgctcaggggg 238  Q
    ||||||||||| | || |||||||||||| || ||| |||| ||||| ||| |||||| ||||||| ||||||||| |||||||| ||||    
T  36008359 aaggtgaataagtggggtgttcggggttcgaaccccggcccctgcatataacaatgcattgtccctgccaactgagctatgctcacgggg 36008270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 42758161 - 42758257
Alignment:
Q  136 aattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||| ||||||| ||||||||||| | || ||| | |||||| || ||| |||| ||||| ||| ||||||||||||||| ||||||| ||||||||    
T  42758161 aattcatctttttgaaggtgaataagtggggtgtccagggttcgaa-cccggcccctgcatataataatgcatgtccctacaaactgagctatgctca 42758257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 229
Target Start/End: Original strand, 12585563 - 12585649
Alignment:
Q  143 ctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatg 229  Q
    |||||||||| ||||||| |  | |||||||||||| ||  || |||| | ||| ||| ||||||||||||| ||||||||||||||    
T  12585563 ctttttcaagatgaataagtgaggtgttcggggttcgaactccggcccttacatataacaatgcatgtccctgccaactgagttatg 12585649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 29785240 - 29785146
Alignment:
Q  144 tttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggg 238  Q
    ||||||||||||||||| | || ||| |||||||| || |||||||| | ||| | | | || |||||||| ||||||||| |||||||| ||||    
T  29785240 tttttcaaggtgaataagtggggtgtccggggttcgaaccccagcccctacatattacagtgtatgtccctgccaactgagctatgctcacgggg 29785146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 48991864 - 48991958
Alignment:
Q  135 gaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgct 231  Q
    |||||| |||||||||| ||  |||| | ||||||||||||||| || ||| |||| ||||| ||| |||| |||| |||  |||||||||||||||    
T  48991864 gaattcatctttttcaaagt--ataactaggatgttcggggttcgaaccccggcccttgcatataacaatgtatgttcctgtcaactgagttatgct 48991958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 49319483 - 49319394
Alignment:
Q  144 tttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||||||||||||||| | || ||| |||||||  || |||  ||| ||||| ||| ||||||||||| | ||||||||| ||||||||    
T  49319483 tttttcaaggtgaataagtggggtgtccggggttggaaccccgacccctgcatataataatgcatgtccatgccaactgagctatgctca 49319394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 41492533 - 41492597
Alignment:
Q  174 ggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggg 238  Q
    ||||| || ||| |||| ||||| ||| ||||||||||||| ||||||||| |||||||| ||||    
T  41492533 ggttcgaaccccggcccctgcatataataatgcatgtccctgccaactgagctatgctcacgggg 41492597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 49743476 - 49743364
Alignment:
Q  120 gtagtttcgtggttcgaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaa 219  Q
    ||||||| ||||||  |||||  |||||||||||| ||||| |  | ||| |||||||| || ||| |||| ||||| ||| ||||||| ||||| ||||    
T  49743476 gtagtttagtggttaaaattcacctttttcaaggtaaataagtgaggtgtccggggttcgaatcccggcccctgcatataataatgcatatccctgccaa 49743377  T
Q  220 ctgagttatgctc 232  Q
    ||||  |||||||    
T  49743376 ctgaactatgctc 49743364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 4010007 - 4010112
Alignment:
Q  128 gtggttcgaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagtta 227  Q
    |||||| ||||||  | |||||||||||||||||| || |||||||||||| ||   | |||| ||||| ||| ||||||||||||||||||||||| ||    
T  4010007 gtggttagaattcaacattttcaaggtgaataaatggggtgttcggggttcaaactgcggcccctgcatataacaatgcatgtccctaccaactgagcta 4010106  T
Q  228 tgctca 233  Q
    ||||||    
T  4010107 tgctca 4010112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 3973391 - 3973303
Alignment:
Q  145 ttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    |||||||||||||||||| || ||| |||||||| || | | |||| ||||| ||| ||||||||||||||||||||||| ||||||||    
T  3973391 ttttcaaggtgaataaatggggtgtccggggttcaaatcgcggcccctgcatataacaatgcatgtccctaccaactgagctatgctca 3973303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 233
Target Start/End: Original strand, 3996485 - 3996573
Alignment:
Q  145 ttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    |||||||||||||||||| || ||| |||||||| || | | |||| ||||| ||| ||||||||||||||||||||||| ||||||||    
T  3996485 ttttcaaggtgaataaatggggtgtccggggttcaaatcgcggcccctgcatataacaatgcatgtccctaccaactgagctatgctca 3996573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 24130650 - 24130555
Alignment:
Q  143 ctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggg 238  Q
    |||||||||||||||||| | || ||| |||||||| || |||  ||| ||||| ||| |||| |||||||| |||||||||||||||||| ||||    
T  24130650 ctttttcaaggtgaataagtggggtgtccggggttcaaaccccgtcccctgcatataacaatgtatgtccctgccaactgagttatgctcacgggg 24130555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 31108764 - 31108854
Alignment:
Q  143 ctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    |||||||||||||||||| | || |||   |||||| || |||||||| ||||| |||  |||||||||||| ||||||||||||||||||    
T  31108764 ctttttcaaggtgaataagtggggtgtctcgggttcgaaccccagcccctgcatataattatgcatgtccctgccaactgagttatgctca 31108854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 36842252 - 36842163
Alignment:
Q  144 tttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    |||||||| |||||||| | |||||| |||||||| || |||  ||| || |||||| ||||||| |||||| |||||||||||||||||    
T  36842252 tttttcaaagtgaataagtgggatgtacggggttcgaaccccgacccctgaatttaaaaatgcatatccctatcaactgagttatgctca 36842163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 40160826 - 40160736
Alignment:
Q  143 ctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    |||||| ||||||||||| | || ||| |||||||| || ||||||||  |||| ||| ||||||||||||| |||| |||| ||||||||    
T  40160826 ctttttaaaggtgaataagtggggtgtccggggttcaaaccccagccccggcatataacaatgcatgtccctgccaattgagctatgctca 40160736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 40956668 - 40956786
Alignment:
Q  120 gtagtttcgtggttcgaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaa 219  Q
    ||||||| |||||| ||||||  |||||| ||| |||||||||  | ||| |||||||| ||  || |||| || || ||| ||||  ||||||||||||    
T  40956668 gtagtttagtggttagaattcaccttttttaagctgaataaatgaggtgtccggggttcgaactccggcccttgtatataataatgtttgtccctaccaa 40956767  T
Q  220 ctgagttatgctcaggggg 238  Q
    |||||||||||||| ||||    
T  40956768 ctgagttatgctcacgggg 40956786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 28951956 - 28951867
Alignment:
Q  144 tttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||||||||||||||| | || |||||||||||| || ||   ||| ||||| ||| |||||||||  || ||||||||||||||||||    
T  28951956 tttttcaaggtgaataagtggggtgttcggggttcgaaccctgacccctgcatataataatgcatgtatctgccaactgagttatgctca 28951867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 47191457 - 47191368
Alignment:
Q  150 aaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgca-tgtccctaccaactgagttatgctcaggggg 238  Q
    ||||||||||| | || |||||||||||| ||  ||||||| ||||| ||| |||||| ||||||| ||||||||| |||||||| ||||    
T  47191457 aaggtgaataagtggggtgttcggggttcgaactccagcccctgcatataataatgcattgtccctgccaactgagctatgctcacgggg 47191368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 233
Target Start/End: Complemental strand, 23305778 - 23305747
Alignment:
Q  202 aatgcatgtccctaccaactgagttatgctca 233  Q
    ||||||||||||||||||||||||||||||||    
T  23305778 aatgcatgtccctaccaactgagttatgctca 23305747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 33206841 - 33206758
Alignment:
Q  150 aaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||||||||| | || ||| |||||||| || |||||||| ||||| ||| |||||||   ||||||||||||| ||||||||    
T  33206841 aaggtgaataagtggggtgtccggggttcgaaccccagcccctgcatataataatgcattgtcctaccaactgagctatgctca 33206758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 3461752 - 3461818
Alignment:
Q  167 tgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    |||||||||||| || |||| ||| | ||| ||| |||||||||||||  |||||||||||||||||    
T  3461752 tgttcggggttcgaaccccaacccctacatataacaatgcatgtccctgtcaactgagttatgctca 3461818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 14868766 - 14868680
Alignment:
Q  153 gtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgca-tgtccctaccaactgagttatgctcaggggg 238  Q
    |||||||| | || |||||||||||| || ||| |||| ||||| ||| |||||| ||||||| ||||||||| |||||||| ||||    
T  14868766 gtgaataagtggggtgttcggggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcacgggg 14868680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 225
Target Start/End: Original strand, 34407086 - 34407176
Alignment:
Q  135 gaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagt 225  Q
    |||||| || |||||||| ||||||| | || |||  ||||||| || |||| ||| ||||| ||| ||||||||||||| ||||||||||    
T  34407086 gaattcatcattttcaagatgaataagtggggtgtctggggttcgaaccccaacccctgcatataataatgcatgtccctgccaactgagt 34407176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 41430834 - 41430880
Alignment:
Q  192 tgcatttaagaatgcatgtccctaccaactgagttatgctcaggggg 238  Q
    ||||| ||| ||||||| |||||||||||||||||||||||| ||||    
T  41430834 tgcatataataatgcatatccctaccaactgagttatgctcacgggg 41430880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 3993696 - 3993801
Alignment:
Q  128 gtggttcgaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagtta 227  Q
    |||||| ||||||  | ||||||| ||| |||||| || ||| |||||||| || | | |||| ||||| ||| |||||||||||||  |||||||| ||    
T  3993696 gtggttagaattcaccattttcaaagtgcataaatggggtgtccggggttcaaaccgcggcccctgcatataacaatgcatgtccctctcaactgagcta 3993795  T
Q  228 tgctca 233  Q
    ||||||    
T  3993796 tgctca 3993801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 27153111 - 27153166
Alignment:
Q  274 cccttactgagctccatattggcggaaataaatttccatt--taatttcataaaag 327  Q
    |||||| |||||||||||||||| ||||| |||| |||||  ||||||||||||||    
T  27153111 cccttaatgagctccatattggctgaaatcaattcccattaataatttcataaaag 27153166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 49639113 - 49639029
Alignment:
Q  149 caaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    |||||||||||| | || |||||||||||| || ||| |||| | ||| ||| |||||||   ||||||||||||| ||||||||    
T  49639113 caaggtgaataagtggggtgttcggggttcgaaccccggcccctacatataataatgcattgtcctaccaactgagctatgctca 49639029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 50199480 - 50199564
Alignment:
Q  143 ctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagtta 227  Q
    |||||||||||||||||| | || ||| |||||||| || ||| |||| ||||| ||| ||||||||||||||||||||||||||    
T  50199480 ctttttcaaggtgaataagtggggtgtccggggttcgaaccccggcccctgcatataacaatgcatgtccctaccaactgagtta 50199564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 9768813 - 9768914
Alignment:
Q  143 ctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggggcac 242  Q
    |||||||||||||||||| | || ||| |||||||| || |||  ||| ||||| ||| ||||||||||||| ||||||||| |||||||| |||| |||    
T  9768813 ctttttcaaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtccctgccaactgagctatgctcacggggacac 9768912  T
Q  243 aa 244  Q
    ||    
T  9768913 aa 9768914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 238
Target Start/End: Complemental strand, 18003907 - 18003812
Alignment:
Q  143 ctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggg 238  Q
    ||||||| |||||||||| | || ||||||||| || || ||| |||| ||||| ||| ||||||||||||| ||||||||| |||||||| ||||    
T  18003907 ctttttccaggtgaataagtggggtgttcggggctcgaaccccggcccctgcatataacaatgcatgtccctgccaactgagctatgctcacgggg 18003812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 1721231 - 1721141
Alignment:
Q  143 ctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    |||||| ||||||||||| |  | ||| |||||||| |||||| |||| ||||| ||| ||||||||| ||||||||||||| ||||||||    
T  1721231 cttttttaaggtgaataagtgaggtgtccggggttcgaaacccggcccctgcatataacaatgcatgttcctaccaactgagctatgctca 1721141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 9769560 - 9769674
Alignment:
Q  119 ggtagtttcgtggttcgaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctacca 218  Q
    ||||| || |||||| ||||||  |||||||||||||||||| | || ||| |||||||| || ||||  || | ||| ||| ||||||||||||| |||    
T  9769560 ggtagcttagtggttagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccaatccctacatataataatgcatgtccctgcca 9769659  T
Q  219 actgagttatgctca 233  Q
    |||||| ||||||||    
T  9769660 actgagctatgctca 9769674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 2903023 - 2903116
Alignment:
Q  135 gaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttat 228  Q
    ||||||| |||||||||||||||||| | || |||||||||||| || |||  ||  ||||| ||| |||||||||||||  ||||||||||||    
T  2903023 gaattctcctttttcaaggtgaataagtggggtgttcggggttcgaaccccgacctctgcatataacaatgcatgtccctggcaactgagttat 2903116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 3341740 - 3341827
Alignment:
Q  143 ctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgc 230  Q
    |||||||||||||||||| | || ||| |||||||| |  ||| |||| ||||| ||| ||||||||||||| ||||||||| |||||    
T  3341740 ctttttcaaggtgaataagtggggtgtccggggttcgatccccggcccctgcatataataatgcatgtccctgccaactgagctatgc 3341827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 35424239 - 35424164
Alignment:
Q  135 gaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgt 210  Q
    |||||| ||||||||||||||||||||| || | | |||||||| || | |||||||||||| ||| |||||||||    
T  35424239 gaattcatctttttcaaggtgaataaatggggtatccggggttcgaatctcagcccatgcatataacaatgcatgt 35424164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 238
Target Start/End: Complemental strand, 18179454 - 18179324
Alignment:
Q  108 tttttcggtccggtagtttcgtggttcgaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgca 207  Q
    ||||| |||| |||||| | |||| | ||||||| ||||||||||| ||||||   || |||  ||||||| ||  || | || ||||| ||| ||||||    
T  18179454 ttttttggtcaggtagtctagtggctagaattctcctttttcaaggagaataagcagggtgtctggggttcgaactccggtccctgcatataacaatgca 18179355  T
Q  208 tgtccctaccaactgagttatgctcaggggg 238  Q
    ||||||| |||||||||||||||||| ||||    
T  18179354 tgtccctgccaactgagttatgctcacgggg 18179324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 7906360 - 7906425
Alignment:
Q  173 gggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggg 238  Q
    |||||| || |||||||| ||||| ||| ||||||||||||||||||||||  |||||||| ||||    
T  7906360 gggttcgaaccccagcccctgcatataacaatgcatgtccctaccaactgaactatgctcacgggg 7906425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 233
Target Start/End: Original strand, 52833120 - 52833201
Alignment:
Q  153 gtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcat-gtccctaccaactgagttatgctca 233  Q
    |||||||||| |||||| |||||||| || ||| |||| ||||| ||| ||||||| |||||| |||||||||||| |||||    
T  52833120 gtgaataaatgggatgtccggggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagttaggctca 52833201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 238
Target Start/End: Complemental strand, 9931171 - 9931083
Alignment:
Q  150 aaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggg 238  Q
    ||||||||||| | || |||| ||||||| ||  ||||| | ||||| ||| ||||||||||||| | |||||||||||||||| ||||    
T  9931171 aaggtgaataagtggggtgtttggggttcgaactccagctcttgcatataataatgcatgtccctgctaactgagttatgctcacgggg 9931083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 232
Target Start/End: Complemental strand, 23750256 - 23750152
Alignment:
Q  128 gtggttcgaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagtta 227  Q
    |||||| ||||||  |||||||||| ||||||| | || ||||| |||||  || |||  |||||| || ||| ||||||| ||||||||||||||| ||    
T  23750256 gtggttagaattcacctttttcaagatgaataagtggggtgttcagggtttgaaccccgacccatgtatataacaatgcatatccctaccaactgagcta 23750157  T
Q  228 tgctc 232  Q
    |||||    
T  23750156 tgctc 23750152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 33176148 - 33176202
Alignment:
Q  184 ccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggg 238  Q
    ||||||| ||||| ||| ||||||| ||||||||||||||| |||||||| ||||    
T  33176148 ccagcccctgcatataacaatgcatatccctaccaactgagctatgctcaagggg 33176202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 195150 - 195045
Alignment:
Q  128 gtggttcgaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagtta 227  Q
    |||||| ||||||  |||||||||||||||||| | || |||  ||||| | || | |||||| ||||| |||  |||||||||||| ||||||||| ||    
T  195150 gtggttagaattcacctttttcaaggtgaataagtggggtgtctggggtacgaacctcagcccctgcatataattatgcatgtccctgccaactgagcta 195051  T
Q  228 tgctca 233  Q
     |||||    
T  195050 cgctca 195045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 28417331 - 28417372
Alignment:
Q  192 tgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||| |||||||||||||| || ||||||||||||||||||    
T  28417331 tgcatataagaatgcatgtctctgccaactgagttatgctca 28417372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 43020701 - 43020612
Alignment:
Q  144 tttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||||||||||||| | | || ||| || ||||| || |||| ||| ||||| ||| ||||||||||||| ||||| ||| ||||||||    
T  43020701 tttttcaaggtgaatgagtggggtgtccgaggttcgaaccccaacccctgcatataataatgcatgtccctgccaaccgagctatgctca 43020612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 20357521 - 20357461
Alignment:
Q  173 gggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    |||||| || |||||||| ||||| ||| |||||||   ||||||||||||||||||||||    
T  20357521 gggttcgaaccccagcccctgcatataataatgcattgtcctaccaactgagttatgctca 20357461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 20562434 - 20562494
Alignment:
Q  173 gggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    |||||| || |||||||| ||||| ||| |||||||   ||||||||||||||||||||||    
T  20562434 gggttcgaaccccagcccctgcatataataatgcattgtcctaccaactgagttatgctca 20562494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 33694632 - 33694536
Alignment:
Q  144 tttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggggc 240  Q
    ||||| ||||||||||| |||| ||||||| |||| || | |  ||| | ||| ||| ||||||| ||||| |||||| ||||||||||| ||||||    
T  33694632 ttttttaaggtgaataagttgggtgttcggcgttcaaacctcgacccctacatataataatgcatatccctgccaactaagttatgctcacgggggc 33694536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 1153 - 1035
Alignment:
Q  120 gtagtttcgtggttcgaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaa 219  Q
    ||||||| |||| | ||||||  |||||||||||||||||| | || |||  ||||||| || |||||||| | ||| |||  |||||||||||||||||    
T  1153 gtagtttagtggctagaattcacctttttcaaggtgaataagtggggtgtctggggttcgaaccccagcccctacatataattatgcatgtccctaccaa 1054  T
Q  220 ctgagttatgctcaggggg 238  Q
    ||||| |||||||| ||||    
T  1053 ctgagctatgctcacgggg 1035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 44487747 - 44487866
Alignment:
Q  119 ggtagtttcgtggttcgaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctacca 218  Q
    ||||| || |||||| ||||||  |||||| ||||||||||| | |||||| |||||||| ||  || |||| ||||| ||| |||||||||||||| ||    
T  44487747 ggtaggttagtggttagaattcaccttttttaaggtgaataagtgggatgtccggggttcgaactccggcccttgcatataataatgcatgtccctatca 44487846  T
Q  219 actgagttatgctcaggggg 238  Q
    |||||| ||| |||| ||||    
T  44487847 actgagctatactcacgggg 44487866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 143 - 233
Target Start/End: Original strand, 39334885 - 39334975
Alignment:
Q  143 ctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||||||| |||||||| | ||||||  || |||| || |||||||| || || ||| ||||||||||||| ||||||||||||||||||    
T  39334885 ctttttcaaagtgaataagtgggatgtctggagttcgaaccccagcccctgtatataataatgcatgtccctgccaactgagttatgctca 39334975  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 7086337 - 7086254
Alignment:
Q  150 aaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||||||||| | || |||||||||||| || ||| |||| ||||| ||| |||||||  |||||||||||||| ||||||||    
T  7086337 aaggtgaataattggggtgttcggggttcgaatcccggcccctgcatataataatgcattgccctaccaactgagctatgctca 7086254  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 18065344 - 18065255
Alignment:
Q  144 tttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||||||||||||||| |  | |||||||||||| || | || ||| ||||| ||| |||||||| | |||||||||||| ||||||||    
T  18065344 tttttcaaggtgaataagtaaggtgttcggggttcgaacctcaacccctgcatataacaatgcatgcctctaccaactgagctatgctca 18065255  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 233
Target Start/End: Original strand, 22297463 - 22297546
Alignment:
Q  150 aaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||||||||||| || ||| |||||||| || ||| |||| ||||| ||| |||||||   ||||||||||||| ||||||||    
T  22297463 aaggtgaataaatggggtgtccggggttcgaacccctgcccctgcatataataatgcattgtcctaccaactgagctatgctca 22297546  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 233
Target Start/End: Original strand, 5029096 - 5029194
Alignment:
Q  135 gaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    |||||| ||||||||||||||||||| | || |||||| | ||| ||  || |||  ||||| ||| ||||||| | ||||||||||||| ||||||||    
T  5029096 gaattcatctttttcaaggtgaataagtggggtgttcgagattcgaactccggcctctgcatataataatgcatatacctaccaactgagctatgctca 5029194  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 243
Target Start/End: Complemental strand, 11133160 - 11133066
Alignment:
Q  150 aaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcat-gtccctaccaactgagttatgctcaggggggcaca 243  Q
    ||||||||||| | || ||| |||||||| || |||  ||| ||||| ||| ||||||| |||||||||||||||| |||||||| |||| ||||    
T  11133160 aaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcattgtccctaccaactgagctatgctcacggggacaca 11133066  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 233
Target Start/End: Complemental strand, 39118492 - 39118394
Alignment:
Q  135 gaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||||| |||||| |||| |||||| | || |||||||| ||| ||  |  |||| ||||| ||| |||| ||||||||||||||||||||| |||||    
T  39118492 gaattctccttttttaaggagaataagtggggtgttcgggattcgaactctggcccctgcatataacaatgtatgtccctaccaactgagttacgctca 39118394  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 14307699 - 14307788
Alignment:
Q  144 tttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||| || |||||||| | || |||||||||||| || | |  ||| ||||| ||| |||||||||||||||||||||||  |||||||    
T  14307699 ttttttaaagtgaataagtggggtgttcggggttcgaacctcgacccctgcatataacaatgcatgtccctaccaactgagccatgctca 14307788  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 19064903 - 19064984
Alignment:
Q  150 aaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgct 231  Q
    ||||||||||||| || |||||| ||||| ||  ||||||  | ||| ||| ||||||||||||| |||| |||||||||||    
T  19064903 aaggtgaataaatggggtgttcgaggttcgaattccagcctctacatataacaatgcatgtccctgccaaatgagttatgct 19064984  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 36386104 - 36386207
Alignment:
Q  129 tggttcgaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttat 228  Q
    ||||| |||||| ||||||| || |||||||| | || ||| || | ||| ||||||  ||| ||||| ||| ||||||| ||||||||||||||| |||    
T  36386104 tggttagaattcatcttttttaaagtgaataagtggggtgtccgagattc-aaacccgacccctgcatataacaatgcatatccctaccaactgagctat 36386202  T
Q  229 gctca 233  Q
    |||||    
T  36386203 gctca 36386207  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 40471251 - 40471159
Alignment:
Q  136 aattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttat 228  Q
    |||||| |||||| |||  |||||| | || |||||||| ||| || |||| ||| ||||| ||| |||||||||||||  ||||||||||||    
T  40471251 aattctcctttttgaagaagaataagtggggtgttcgggattcgaatcccaacccctgcatataataatgcatgtccctgtcaactgagttat 40471159  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 233
Target Start/End: Complemental strand, 17467366 - 17467279
Alignment:
Q  145 ttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    |||||||||||||||| | || ||| |||||||| || ||| |||| ||||| ||| |||| || ||||||||||||||||||||||||    
T  17467366 ttttcaaggtgaataagtggggtgtccggggttcgaa-cccggcccctgcatataataatgtatatccctaccaactgagttatgctca 17467279  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 25470854 - 25470951
Alignment:
Q  147 ttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggggcacaa 244  Q
    |||||||||||||||| || ||| || ||||| || |||  |||||| || ||| ||||||||| |||  ||||||||||||||||| |||| |||||    
T  25470854 ttcaaggtgaataaatggggtgtccgaggttcgaaccccgacccatgaatataataatgcatgttcctgtcaactgagttatgctcacggggacacaa 25470951  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 233
Target Start/End: Complemental strand, 10970350 - 10970267
Alignment:
Q  150 aaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||||||||| | || |||||||||||  || |||||||| ||||| ||| |||||||   ||||||||||||| ||||||||    
T  10970350 aaggtgaataagtggggtgttcggggtttgaaccccagcccctgcatataataatgcattatcctaccaactgagctatgctca 10970267  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 26657948 - 26657857
Alignment:
Q  143 ctttttcaaggtgaataaattgga-tgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    |||||||||||||||||| | ||  |||  ||||||| || ||| | || ||||| ||| ||||||||||||||||||||||| ||||||||    
T  26657948 ctttttcaaggtgaataagtgggggtgtctggggttcgaaccccggtccctgcatataacaatgcatgtccctaccaactgagctatgctca 26657857  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 2696614 - 2696528
Alignment:
Q  153 gtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcat-gtccctaccaactgagttatgctcaggggg 238  Q
    |||||||| | || ||| |||||||| || ||| |||| ||||| ||| ||||||| |||||| |||||||||||||||||| ||||    
T  2696614 gtgaataagtggggtgtccggggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagttatgctcacgggg 2696528  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 7345519 - 7345429
Alignment:
Q  143 ctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    |||||| ||||||||||| | || |||| || |||  || |||  ||| ||||| ||| ||||||||||||| ||||||||||||||||||    
T  7345519 cttttttaaggtgaataagtggggtgtttggagttggaagcccgacccctgcatataataatgcatgtccctgccaactgagttatgctca 7345429  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 28537224 - 28537131
Alignment:
Q  145 ttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctcaggggg 238  Q
    ||||||| |||||||| | || ||| |||||||| || ||| |||||||||| ||| ||||||||||| |  ||| ||||||||||||| ||||    
T  28537224 ttttcaaagtgaataagtggggtgtccggggttcgaaccccggcccatgcatataacaatgcatgtccatgtcaattgagttatgctcacgggg 28537131  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 34325364 - 34325275
Alignment:
Q  135 gaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgag 224  Q
    |||||| | ||||| ||||||||||| ||||||||||| | ||| || ||||| || ||||| ||| |||||||||||||  ||||||||    
T  34325364 gaattcattttttttaaggtgaataagttggatgttcgagattcgaaccccagtccctgcatataataatgcatgtccctgtcaactgag 34325275  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 242
Target Start/End: Original strand, 18101930 - 18102052
Alignment:
Q  120 gtagtttcgtggttcgaattcttctttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaa 219  Q
    ||||||| |||||| |||||| || |||| ||||||||||| | || |||  ||||||| ||  || |||| ||||| ||| ||| |||||| ||| |||    
T  18101930 gtagtttggtggttagaattcatcatttttaaggtgaataagtggggtgtctggggttcgaactccggcccctgcatataataatacatgtctctatcaa 18102029  T
Q  220 ctgagttatgctcaggggggcac 242  Q
    | ||| |||||||| ||||||||    
T  18102030 ccgagctatgctcacgggggcac 18102052  T

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Target: scaffold0054 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 67251 - 67162
Alignment:
Q  144 tttttcaaggtgaataaattggatgttcggggttccaaacccagcccatgcatttaagaatgcatgtccctaccaactgagttatgctca 233  Q
    ||||||||||||| ||| | || ||| | |||||| || |||||||| | ||| ||| ||||||| ||||| ||||||||| ||||||||    
T  67251 tttttcaaggtgattaagtggggtgtccagggttcgaaccccagcccctacatataacaatgcatatccctcccaactgagctatgctca 67162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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