View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17844_high_15 (Length: 454)
Name: NF17844_high_15
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Original strand, 39380829 - 39381281
Alignment:
| Q |
1 |
ttacatttccgagaatgcccttatgcctggttagttactcaacaccttattatggaaataactttaaatcaccacttaagttaagtgcttatttcagtag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39380829 |
ttacatttccgagaatgcccttatgcctggttagttactcaacaccttattatggaaataactttaaatcaccacttaagttaagtgcttatttcagtag |
39380928 |
T |
|
| Q |
101 |
ataacctcaaataagtgaattcaaactattttcatgtaaactatgtgctttttccctaaattattatggagagctaagagcttatgtaaataagttcaaa |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39380929 |
ataacctcaaataagtgaagtcaaactattttcatttaaactatgtgctttttccctaaattattatggagagctaagagcttatgtaaataagttcaaa |
39381028 |
T |
|
| Q |
201 |
attgtttatggacatgtaataataaataagttgtttctataaactctcttaaagagattcccaaatacttatgctagtaggtaatctcaaataaatcggt |
300 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39381029 |
attgtttatggacatttaataataaataagttgtttctataaactctcttaaagatattcacaaatacttatgctagtaggtaatctcaaataagtcggt |
39381128 |
T |
|
| Q |
301 |
ttaaatagacacttactatcttgattcaataatctgtttctacaggttctgctaacagcatgctctctactcaacatgtttcccatgctaacaaattcgt |
400 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39381129 |
ttaaatatacacttactatcttgattcaataatctgtttctgcaggttctgctaacagcatgctctctactcaacatgtttcccatgctaacaaattcat |
39381228 |
T |
|
| Q |
401 |
caatgacctcactcattccgacatgtaaccccttttacctccattttcatctc |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39381229 |
caatgacctcactcattccgacatgtaaccccttttacctccattttcatctc |
39381281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 24048645 - 24048690
Alignment:
| Q |
81 |
ttaagtgcttatttcagtagataacctcaaataagtgaattcaaac |
126 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
24048645 |
ttaagtacttatgtcagtagataaactcaaataagtaaattcaaac |
24048690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 6987783 - 6987738
Alignment:
| Q |
177 |
agagcttatgtaaataagttcaaaattgtttatggacatgtaataa |
222 |
Q |
| |
|
|||||||||| ||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
6987783 |
agagcttatggaaataagttgaaaatagtttatggacatgtcataa |
6987738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 2811581 - 2811621
Alignment:
| Q |
86 |
tgcttatttcagtagataacctcaaataagtgaattcaaac |
126 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
2811581 |
tgcttatgccagtagataacctcaaataagtcaattcaaac |
2811621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 3973648 - 3973692
Alignment:
| Q |
82 |
taagtgcttatttcagtagataacctcaaataagtgaattcaaac |
126 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
3973648 |
taagtgcttatatcagtggataagctcaaataagtgaatccaaac |
3973692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University