View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_high_16 (Length: 449)
Name: NF17844_high_16
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 5e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 12 - 271
Target Start/End: Complemental strand, 32039480 - 32039224
Alignment:
| Q |
12 |
atgaattgaagggtgtgtgtgagttttgtggtgtacggtatctctttgattctctgttctttctgaacagagttggtgagagttaaaactatcagactga |
111 |
Q |
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| T |
32039480 |
atgaattgaagggtgtgtgtgagttttgttttgtacggtatctctttgattctctgttctttctgaacagagttggtgagagttaaaactatcagactga |
32039381 |
T |
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| Q |
112 |
aaggtgcgtttgggaatgggtgtagttatatagagtgagtacttgtaataacaatgtaatggt-tttactacttccttcattttataactataattaaga |
210 |
Q |
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| T |
32039380 |
aaggtgcgtttgggaatgggtgtagttatatagagtgagtacttgtaaccatttttttagagtgagtactacttccttcattttataatta----taaga |
32039285 |
T |
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| Q |
211 |
gtatcaatacatgttctgtatcacatatttttatcgattaaaattcatatattttttcttt |
271 |
Q |
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| T |
32039284 |
gtatcaatacatgttctgtatcacatatttttatcgattaaaattcatatattttttcttt |
32039224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 341 - 435
Target Start/End: Complemental strand, 32038430 - 32038336
Alignment:
| Q |
341 |
ggttgaaaagcttattaagagttattaaagttgtttcgagtcttacatcactcaagttctcgaatgtattgcattctctaatccaatgtcctgac |
435 |
Q |
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| T |
32038430 |
ggttgaaaagcttattaagagttattaaagttgtttcgagtcttacatcactcaagttctcgagtgtattgcattctctaatccaatgtcctgac |
32038336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 263 - 321
Target Start/End: Complemental strand, 32038473 - 32038415
Alignment:
| Q |
263 |
tttttcttttaagatttggtgtagcttacatggctttaattaaggttgaaaagcttatt |
321 |
Q |
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| T |
32038473 |
tttttcttttaagatttggtgtagcttacatgactttaattaaggttgaaaagcttatt |
32038415 |
T |
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