View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_high_21 (Length: 421)
Name: NF17844_high_21
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 130 - 411
Target Start/End: Complemental strand, 32438206 - 32437932
Alignment:
| Q |
130 |
caaaaacttcacttgaagataaatcgtttgggaaaagctaaatttgattattgggggaaacaattcttaatcacactttatatacctatcaattgaactg |
229 |
Q |
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| T |
32438206 |
caaaaacttcacttgaagataaatcgtatgggaaaagctaaatttgattattgggtgaaataattcttaatcacactttatatagttatcaattgaactc |
32438107 |
T |
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| Q |
230 |
caggttgataagtttcatttcctctaggaacctgagttnnnnnnnnnngtcacgtgtatagtaaaatcatctatacttactgttccttgtcnnnnnnnnn |
329 |
Q |
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| T |
32438106 |
cggattgataagttt-atttcctctaggaacatgagtt---aaaaaaagttacgtgtatagtaaaatcatctatacttactgctccttgt--taaaaaaa |
32438013 |
T |
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| Q |
330 |
nnnnnnnnctatgcttactcttcaactaaagttgattatagtttataacacaacaaatcatcattgcaatattttcatatca |
411 |
Q |
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| T |
32438012 |
aaaaaaaactat-attactcttccccaaaagttgattctagtttattacacaacaaatcatcattgcaatattttcatatca |
32437932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 32438344 - 32438290
Alignment:
| Q |
2 |
ttttgaaatggctaatattattctcgtcggaagaaatgcaagaagcaaccaccgc |
56 |
Q |
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| T |
32438344 |
ttttgaaatggctaatattattctcgtcggaagaaatgcaagaagcaaccaccgc |
32438290 |
T |
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