View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_high_23 (Length: 398)
Name: NF17844_high_23
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 39 - 394
Target Start/End: Original strand, 24269444 - 24269808
Alignment:
| Q |
39 |
ttgtagtcaagcataactagagaaacatcggtcctcaagacacaaagtttttaatgtatattgtgtgtagcataatagatcgtcatatgatgcacttata |
138 |
Q |
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| T |
24269444 |
ttgtagtcaagcataactagagaaacatcgatcctcaaaacaca--gtttttaatgtatattgtgtgtagcataatagatcgtcatatgatgcacatata |
24269541 |
T |
|
| Q |
139 |
ttggtgnnnnnnnnn---ataaacaaaagagattatattaaatcaac--------gttacacagataggccaaatcctcaaggatctctcgatccatatt |
227 |
Q |
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| T |
24269542 |
ttggtgttttttttttttataaacaaaagagattatattaaatcaacaaatcagcgttacacagataggccaaatcctcaaggatctctcgatccatatt |
24269641 |
T |
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| Q |
228 |
gaattgcgcttaataaaagtgtattggctaattcatgagctaccctattccctgatcgtaaacaaaaaagtacaactataaaaacacctcttcatcttcc |
327 |
Q |
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| T |
24269642 |
gaattgcgcttaataaaagtgtattggctaattcatgagctaccctattccctgatcgtaaacaaaaaagtacaactataaaaacacctcttcatcttcc |
24269741 |
T |
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| Q |
328 |
taatgcttctcacaaaacaccctgaatgcctaagtgaaagtgaaatgttcatcttcctatgcttctc |
394 |
Q |
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| T |
24269742 |
taatgcttctcacaaaactccctgaatgcctaagtgaaagtgaaatgttcatcttcctatgcttctc |
24269808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 24269789 - 24269841
Alignment:
| Q |
318 |
ttcatcttcctaatgcttctcacaaaacaccctgaatgcctaagtgaaagtgaa |
371 |
Q |
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| T |
24269789 |
ttcatcttccta-tgcttctcacaaaactcccaaaaggcctaagtgaaagtgaa |
24269841 |
T |
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