View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17844_high_26 (Length: 392)

Name: NF17844_high_26
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17844_high_26
NF17844_high_26
[»] chr1 (8 HSPs)
chr1 (6-377)||(46342128-46342498)
chr1 (261-366)||(6562894-6563001)
chr1 (267-371)||(46341593-46341699)
chr1 (288-371)||(44470033-44470116)
chr1 (255-334)||(50036780-50036861)
chr1 (268-364)||(6562322-6562421)
chr1 (288-332)||(29356733-29356777)
chr1 (257-332)||(7942909-7942986)
[»] scaffold0341 (2 HSPs)
scaffold0341 (261-366)||(18084-18191)
scaffold0341 (268-364)||(17512-17611)
[»] chr8 (6 HSPs)
chr8 (257-364)||(32382637-32382744)
chr8 (257-364)||(32436592-32436699)
chr8 (329-371)||(32383227-32383269)
chr8 (329-371)||(32437182-32437224)
chr8 (321-362)||(7172618-7172659)
chr8 (315-371)||(1114738-1114794)
[»] chr3 (8 HSPs)
chr3 (289-362)||(30839191-30839264)
chr3 (289-334)||(13747777-13747822)
chr3 (288-371)||(13743261-13743344)
chr3 (288-371)||(2743365-2743449)
chr3 (315-366)||(66896-66946)
chr3 (289-360)||(3112830-3112901)
chr3 (288-334)||(4274054-4274100)
chr3 (315-371)||(28611122-28611178)
[»] chr5 (3 HSPs)
chr5 (257-331)||(34545171-34545247)
chr5 (321-366)||(34545689-34545734)
chr5 (288-334)||(13563635-13563681)
[»] chr7 (3 HSPs)
chr7 (267-328)||(38857988-38858051)
chr7 (267-311)||(38857048-38857094)
chr7 (288-334)||(29097916-29097962)
[»] chr4 (2 HSPs)
chr4 (288-371)||(15999821-15999905)
chr4 (289-334)||(36480596-36480641)
[»] chr2 (3 HSPs)
chr2 (267-335)||(41565296-41565366)
chr2 (288-371)||(3803565-3803649)
chr2 (288-334)||(40220607-40220653)
[»] chr6 (1 HSPs)
chr6 (315-360)||(23958885-23958930)
[»] scaffold0513 (1 HSPs)
scaffold0513 (292-332)||(8171-8211)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 6 - 377
Target Start/End: Complemental strand, 46342498 - 46342128
Alignment:
Q  6 caaaggtagccaggtaggtactataggctgaattacttttattggtttgcttcaatatcttttcccccaactctgacgcttttgatcatagttttatagt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46342498 caaaggtagccaggtaggtactataggctgaattacttttattggtttgcttcaatatcttttcccccaactctgacgcttttgatcatagttttatagt 46342399  T
Q  106 tgttctttaaatgcagaaaaatgctaaaaagatatgaaactgaaattatttttcttggtattttttaagagtttaattagtattc-----ttgctc---n 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||        
T  46342398 tgttctttaaatgcagaaaaatgctaaaaagatatgaaactgaaattatttttcttggtattttttaagagtttaattagtattcaatctttgctcaaaa 46342299  T
Q  198 nnnnnnnntattagtattcaatctcgcggtaaaaaataaagttttgcacatacgtagaagagtattgcggttgacacatttgatagggctgaaacacatg 297  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  46342298 aaaaaaaatattagtattcaatctcgcggtaaaaaataaagttttgcacatacgtagaagagtattgcggttgacacatttgatagggctgaaacatatg 46342199  T
Q  298 taaattatccaaatattcctcggcagttaactgccgagacagttcaaaaccggctgcaattaactaccggggaaccagtt 377  Q
    ||||||||| ||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46342198 taaattatctaaatattcct---------actgccgagacagttcaaaaccggctgcaattaactaccggggaaccagtt 46342128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 261 - 366
Target Start/End: Complemental strand, 6563001 - 6562894
Alignment:
Q  261 attgcggttgacacatttgatagggctgaaa--cacatgtaaattatccaaatattcctcggcagttaactgccgagacagttcaaaaccggctgcaatt 358  Q
    ||||| ||||||||||||||||||| |||||  |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||    
T  6563001 attgctgttgacacatttgatagggttgaaaaacacatgtaaattatccaaatatccctcggcagttaactgccgagacggttcaaaaccggctgcagtt 6562902  T
Q  359 aactaccg 366  Q
    ||||||||    
T  6562901 aactaccg 6562894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 267 - 371
Target Start/End: Original strand, 46341593 - 46341699
Alignment:
Q  267 gttgacacatttgatagggctgaaacac--atgtaaattatccaaatattcctcggcagttaactgccgagacagttcaaaaccggctgcaattaactac 364  Q
    ||||||||||||||||||||||||| ||  |||||| |||| ||||||| |||||  ||||||||||||||||||||||||| || ||||| ||||||||    
T  46341593 gttgacacatttgatagggctgaaaaacgtatgtaagttattcaaatatccctcgatagttaactgccgagacagttcaaaatcgactgcagttaactac 46341692  T
Q  365 cggggaa 371  Q
    || ||||    
T  46341693 cgaggaa 46341699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 371
Target Start/End: Complemental strand, 44470116 - 44470033
Alignment:
Q  288 gaaacacatgtaaattatccaaatattcctcggcagttaactgccgagacagttcaaaaccggctgcaattaactaccggggaa 371  Q
    ||||||||| |||||||||||||||  |||||||||||||||||||||  | || ||| ||||||||| |||||| ||| ||||    
T  44470116 gaaacacatttaaattatccaaatacccctcggcagttaactgccgaggaatttgaaatccggctgcagttaactgccgaggaa 44470033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 334
Target Start/End: Original strand, 50036780 - 50036861
Alignment:
Q  255 aagagtattgcggttgacacatttgatagggctga--aacacatgtaaattatccaaatattcctcggcagttaactgccga 334  Q
    ||||| ||||| |||||||||||||||  ||||||  |||||| ||||||||  ||||| | ||||||||||||||||||||    
T  50036780 aagagaattgctgttgacacatttgatttggctgagaaacacaagtaaattactcaaatgtccctcggcagttaactgccga 50036861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 6562322 - 6562421
Alignment:
Q  268 ttgacacatttgatagggctgaaa---cacatgtaaattatccaaatattcctcggcagttaactgccgagacagttcaaaaccggctgcaattaactac 364  Q
    |||| ||||||||||| |||||||   || || ||||||| | |||||||| |||||||||||||| ||| |||||| ||||||| || || ||||||||    
T  6562322 ttgatacatttgatagagctgaaaaaacaaatctaaattacctaaatattcatcggcagttaactgtcgatacagtttaaaaccgactacagttaactac 6562421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 29356777 - 29356733
Alignment:
Q  288 gaaacacatgtaaattatccaaatattcctcggcagttaactgcc 332  Q
    |||||||| ||||||||||||||||  ||||||||||||||||||    
T  29356777 gaaacacaagtaaattatccaaatacccctcggcagttaactgcc 29356733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 7942909 - 7942986
Alignment:
Q  257 gagtattgcggttgacacatttgatagggctgaaacacatg--taaattatccaaatattcctcggcagttaactgcc 332  Q
    ||||||||  || ||||||||||||  |||||||| |||||  |||||||  ||||| ||||||||||||||||||||    
T  7942909 gagtattgttgtggacacatttgatttggctgaaaaacatgagtaaattactcaaattttcctcggcagttaactgcc 7942986  T

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Target: scaffold0341 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 261 - 366
Target Start/End: Complemental strand, 18191 - 18084
Alignment:
Q  261 attgcggttgacacatttgatagggctgaaa--cacatgtaaattatccaaatattcctcggcagttaactgccgagacagttcaaaaccggctgcaatt 358  Q
    ||||| ||||||||||||||||||| |||||  |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||    
T  18191 attgctgttgacacatttgatagggttgaaaaacacatgtaaattatccaaatatccctcggcagttaactgccgagacggttcaaaaccggctgcagtt 18092  T
Q  359 aactaccg 366  Q
    ||||||||    
T  18091 aactaccg 18084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 364
Target Start/End: Original strand, 17512 - 17611
Alignment:
Q  268 ttgacacatttgatagggctgaaa---cacatgtaaattatccaaatattcctcggcagttaactgccgagacagttcaaaaccggctgcaattaactac 364  Q
    |||| ||||||||||| |||||||   || || ||||||| | |||||||| |||||||||||||| ||| |||||| ||||||| || || ||||||||    
T  17512 ttgatacatttgatagagctgaaaaaacaaatctaaattacctaaatattcatcggcagttaactgtcgatacagtttaaaaccgactacagttaactac 17611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 257 - 364
Target Start/End: Original strand, 32382637 - 32382744
Alignment:
Q  257 gagtattgcggttgacacatttgatagggctgaaacacatgtaaattatccaaatattcctcggcagttaactgccgagacagttcaaaaccggctgcaa 356  Q
    ||||||| | |||||||||||||||||     |||||||||||| |||| ||||||  | |||||||||||||| ||||||||||||||||||||||||     
T  32382637 gagtattactgttgacacatttgatagcagaaaaacacatgtaagttattcaaatacccatcggcagttaactgtcgagacagttcaaaaccggctgcag 32382736  T
Q  357 ttaactac 364  Q
    ||||||||    
T  32382737 ttaactac 32382744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 257 - 364
Target Start/End: Original strand, 32436592 - 32436699
Alignment:
Q  257 gagtattgcggttgacacatttgatagggctgaaacacatgtaaattatccaaatattcctcggcagttaactgccgagacagttcaaaaccggctgcaa 356  Q
    ||||||| | |||||||||||||||||     |||||||||||| |||| ||||||  | |||||||||||||| ||||||||||||||||||||||||     
T  32436592 gagtattactgttgacacatttgatagcagaaaaacacatgtaagttattcaaatacccatcggcagttaactgtcgagacagttcaaaaccggctgcag 32436691  T
Q  357 ttaactac 364  Q
    ||||||||    
T  32436692 ttaactac 32436699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 32383269 - 32383227
Alignment:
Q  329 tgccgagacagttcaaaaccggctgcaattaactaccggggaa 371  Q
    |||||||||||||||||| |||||||| |||||||||| ||||    
T  32383269 tgccgagacagttcaaaatcggctgcagttaactaccgaggaa 32383227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 371
Target Start/End: Complemental strand, 32437224 - 32437182
Alignment:
Q  329 tgccgagacagttcaaaaccggctgcaattaactaccggggaa 371  Q
    |||||||||||||||||| |||||||| |||||||||| ||||    
T  32437224 tgccgagacagttcaaaatcggctgcagttaactaccgaggaa 32437182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 362
Target Start/End: Complemental strand, 7172659 - 7172618
Alignment:
Q  321 cagttaactgccgagacagttcaaaaccggctgcaattaact 362  Q
    |||||||||||||||| | || ||||||||||||||||||||    
T  7172659 cagttaactgccgagaaattttaaaaccggctgcaattaact 7172618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 1114738 - 1114794
Alignment:
Q  315 cctcggcagttaactgccgagacagttcaaaaccggctgcaattaactaccggggaa 371  Q
    |||||||||||||||||||||| | || ||| ||||||||| |||||| ||| ||||    
T  1114738 cctcggcagttaactgccgagaaatttgaaatccggctgcagttaactgccgaggaa 1114794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 30839264 - 30839191
Alignment:
Q  289 aaacacatgtaaattatccaaatattcctcggcagttaactgccgagacagttcaaaaccggctgcaattaact 362  Q
    |||||||||||||||| |||||||   ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  30839264 aaacacatgtaaattacccaaatacctctcggcagttaactgtcgagacagttcaaaaccggctgcagttaact 30839191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 13747822 - 13747777
Alignment:
Q  289 aaacacatgtaaattatccaaatattcctcggcagttaactgccga 334  Q
    |||||||||||||||||||||||| |||||||||||||||||||||    
T  13747822 aaacacatgtaaattatccaaatactcctcggcagttaactgccga 13747777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 371
Target Start/End: Original strand, 13743261 - 13743344
Alignment:
Q  288 gaaacacatgtaaattatccaaatattcctcggcagttaactgccgagacagttcaaaaccggctgcaattaactaccggggaa 371  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||  | || ||| ||||||||| |||||| ||| ||||    
T  13743261 gaaacacatgtaaattacccaaatacccctcggcagttaactgccgaggaatttgaaatccggctgcagttaactgccgaggaa 13743344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 371
Target Start/End: Original strand, 2743365 - 2743449
Alignment:
Q  288 gaaacacatgtaaattatccaaatattcc-tcggcagttaactgccgagacagttcaaaaccggctgcaattaactaccggggaa 371  Q
    |||||||| |||||||| |||||||| || |||||||||||||||||||  | || ||| ||||||||| |||||| ||| ||||    
T  2743365 gaaacacaagtaaattacccaaatatcccctcggcagttaactgccgaggaatttgaaatccggctgcagttaactgccgaggaa 2743449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 366
Target Start/End: Original strand, 66896 - 66946
Alignment:
Q  315 cctcggcagttaactgccgagacagttcaaaaccggctgcaattaactaccg 366  Q
    |||||||||||||||||||||  | |||||||||||||||| ||||||||||    
T  66896 cctcggcagttaactgccgaggta-ttcaaaaccggctgcagttaactaccg 66946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 3112901 - 3112830
Alignment:
Q  289 aaacacatgtaaattatccaaatattcctcggcagttaactgccgagacagttcaaaaccggctgcaattaa 360  Q
    ||||||||||||| |||  |||| | | |||| ||||||||||||||  ||| |||||||||||||||||||    
T  3112901 aaacacatgtaaaatattaaaatgtccttcggtagttaactgccgaggaagtccaaaaccggctgcaattaa 3112830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 4274054 - 4274100
Alignment:
Q  288 gaaacacatgtaaattatccaaatattcctcggcagttaactgccga 334  Q
    |||||||||||||||||| |||||   ||||||||||||||||||||    
T  4274054 gaaacacatgtaaattattcaaatgcccctcggcagttaactgccga 4274100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 28611178 - 28611122
Alignment:
Q  315 cctcggcagttaactgccgagacagttcaaaaccggctgcaattaactaccggggaa 371  Q
    |||||||||||||||||||||| | |  ||||||||||||| |||||| ||| ||||    
T  28611178 cctcggcagttaactgccgagaaattcaaaaaccggctgcagttaactgccgaggaa 28611122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 257 - 331
Target Start/End: Original strand, 34545171 - 34545247
Alignment:
Q  257 gagtattgcggttgacacatttgatagggctg--aaacacatgtaaattatccaaatattcctcggcagttaactgc 331  Q
    ||||||||| ||||||||||||||||||||||  |||||||||||| |||||||||||  | |||| ||||||||||    
T  34545171 gagtattgctgttgacacatttgatagggctgaaaaacacatgtaagttatccaaatacccttcggtagttaactgc 34545247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 321 - 366
Target Start/End: Complemental strand, 34545734 - 34545689
Alignment:
Q  321 cagttaactgccgagacagttcaaaaccggctgcaattaactaccg 366  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  34545734 cagttaactgccgagacagttcaaaaccggctgcagttaactaccg 34545689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 13563635 - 13563681
Alignment:
Q  288 gaaacacatgtaaattatccaaatattcctcggcagttaactgccga 334  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||||    
T  13563635 gaaacacatgtaaattacccaaatacccctcggcagttaactgccga 13563681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 38858051 - 38857988
Alignment:
Q  267 gttgacacatttgatagggctgaaa--cacatgtaaattatccaaatattcctcggcagttaac 328  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||| ||| || |||||||    
T  38858051 gttgacacatttgatagggctgaaaaacacatgtaaattatccaaatatcccttggtagttaac 38857988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 311
Target Start/End: Original strand, 38857048 - 38857094
Alignment:
Q  267 gttgacacatttgatagggctg--aaacacatgtaaattatccaaat 311  Q
    ||||||||||||||||||||||  ||||||||||||||||| |||||    
T  38857048 gttgacacatttgatagggctgaaaaacacatgtaaattattcaaat 38857094  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 29097962 - 29097916
Alignment:
Q  288 gaaacacatgtaaattatccaaatattcctcggcagttaactgccga 334  Q
    |||||||  |||| |||||||||||| ||||||||||||||||||||    
T  29097962 gaaacacgagtaatttatccaaatatccctcggcagttaactgccga 29097916  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 371
Target Start/End: Complemental strand, 15999905 - 15999821
Alignment:
Q  288 gaaacacatgtaaattatccaaatattcc-tcggcagttaactgccgagacagttcaaaaccggctgcaattaactaccggggaa 371  Q
    |||||||| |||||||| |||||||  || |||||||||||||||||||| | || ||| |||||||||||||||| ||| ||||    
T  15999905 gaaacacaagtaaattacccaaataccccctcggcagttaactgccgagaaatttgaaatccggctgcaattaactgccgaggaa 15999821  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 36480641 - 36480596
Alignment:
Q  289 aaacacatgtaaattatccaaatattcctcggcagttaactgccga 334  Q
    ||||||| |||| |||||||||| ||||||||||||||||||||||    
T  36480641 aaacacaagtaatttatccaaatgttcctcggcagttaactgccga 36480596  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 41565296 - 41565366
Alignment:
Q  267 gttgacacatttgatagggctgaaa--cacatgtaaattatccaaatattcctcggcagttaactgccgag 335  Q
    |||||||||||| ||||||||||||  |||||||||||||||||||||  | || |||||||||| |||||    
T  41565296 gttgacacatttaatagggctgaaaaacacatgtaaattatccaaatacccttcagcagttaactaccgag 41565366  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 371
Target Start/End: Complemental strand, 3803649 - 3803565
Alignment:
Q  288 gaaacacatgtaaattatccaaatattcc-tcggcagttaactgccgagacagttcaaaaccggctgcaattaactaccggggaa 371  Q
    |||||||| |||||||| |||||||| || |||||||||||||||||||  | || ||| ||||||||| |||||| ||| ||||    
T  3803649 gaaacacaagtaaattacccaaatatcccatcggcagttaactgccgaggaatttgaaatccggctgcagttaactgccgaggaa 3803565  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 40220607 - 40220653
Alignment:
Q  288 gaaacacatgtaaattatccaaatattcctcggcagttaactgccga 334  Q
    |||||||  |||||||| ||||||| |||||||||||||||||||||    
T  40220607 gaaacactagtaaattacccaaatactcctcggcagttaactgccga 40220653  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 360
Target Start/End: Original strand, 23958885 - 23958930
Alignment:
Q  315 cctcggcagttaactgccgagacagttcaaaaccggctgcaattaa 360  Q
    |||||||||||||||||||||| | | |||||||||||||| ||||    
T  23958885 cctcggcagttaactgccgagaaattccaaaaccggctgcagttaa 23958930  T

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Target: scaffold0513 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 8171 - 8211
Alignment:
Q  292 cacatgtaaattatccaaatattcctcggcagttaactgcc 332  Q
    |||| |||||||| ||||||| |||||||||||||||||||    
T  8171 cacaagtaaattacccaaatactcctcggcagttaactgcc 8211  T

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