View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_high_33 (Length: 335)
Name: NF17844_high_33
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 11542169 - 11542469
Alignment:
| Q |
16 |
atacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctct |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11542169 |
atacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctct |
11542268 |
T |
|
| Q |
116 |
tgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11542269 |
tgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaag |
11542368 |
T |
|
| Q |
216 |
cgtagtcctcggcggagtactgatgagaccataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatgg |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
11542369 |
cgtagtcctcggcggagtactgatgagaccataagcaattgccaaacattcactatgatactgcaaagccttttctttttcctcttcatcaatgtcatgg |
11542468 |
T |
|
| Q |
316 |
a |
316 |
Q |
| |
|
| |
|
|
| T |
11542469 |
a |
11542469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 34614714 - 34615014
Alignment:
| Q |
16 |
atacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34614714 |
atacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctct |
34614813 |
T |
|
| Q |
116 |
tgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34614814 |
tgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaag |
34614913 |
T |
|
| Q |
216 |
cgtagtcctcggcggagtactgatgagaccataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatgg |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
34614914 |
agtagtcctcggcggagtactgatgagaccataagcaattgccaaacgttcactatgatactgcaaagccttttccttttcctcctcatcaatgtcatgg |
34615013 |
T |
|
| Q |
316 |
a |
316 |
Q |
| |
|
| |
|
|
| T |
34615014 |
a |
34615014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 45 - 316
Target Start/End: Original strand, 34757289 - 34757560
Alignment:
| Q |
45 |
tctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttcca |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34757289 |
tctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttcca |
34757388 |
T |
|
| Q |
145 |
acaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactgatgagac |
244 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
34757389 |
acaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagagtagtcctcggcggagtactgatgagac |
34757488 |
T |
|
| Q |
245 |
cataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatgga |
316 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34757489 |
cataagcaattgccaaacattcactatgatactgcaaagccttttctttttcctcctcatcaatgtcatgga |
34757560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 85 - 316
Target Start/End: Original strand, 34742222 - 34742453
Alignment:
| Q |
85 |
cattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctc |
184 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| | | |||| |||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
34742222 |
cattttccatctttgaaatgatgaaatctcttgttgtccctcacaatgagtttcattcccacaatcttagacatgaatttgatagcattgtgacagtctc |
34742321 |
T |
|
| Q |
185 |
cacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactgatgagaccataagcaattgccaaacgttcactatgatattgcaaagc |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||| |||| || |
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| T |
34742322 |
cacatatacgtagattcttgataattctaagcatagtccttggcggagtactgatgagaccataagctattgccaaacgctcgctatgatatcgcaaggc |
34742421 |
T |
|
| Q |
285 |
cttttctttttcctcctcatcaatgtcatgga |
316 |
Q |
| |
|
|| || ||||||||||||||||| ||||||| |
|
|
| T |
34742422 |
tttctccttttcctcctcatcaatatcatgga |
34742453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 34757254 - 34757287
Alignment:
| Q |
20 |
aatctagcaatatatcatcagagtatctacattt |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
34757254 |
aatctagcaatatatcatcagagtatctacattt |
34757287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 65 - 314
Target Start/End: Original strand, 33778995 - 33779244
Alignment:
| Q |
65 |
accaataatctccacaagagcattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttccaacaatcttggacatgatttt |
164 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| ||||||||||| || || ||||| || || ||||| || ||||| || |||||| | |||||||| || |
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|
| T |
33778995 |
accagtaatccccacaagagcattttccatccttgaaatgatgaaaccttttgttatctctaacaatcagttccctccctacaatcctagacatgatctt |
33779094 |
T |
|
| Q |
165 |
gatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactgatgagaccataagcaattgccaaacgt |
264 |
Q |
| |
|
||| |||||||||||||| ||||| | ||| || ||||||||||| ||||| | || || || |||||||| || |||||||| |||||||| | ||| |
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|
| T |
33779095 |
gatggcattgtgacagtcaccacagacacgaaggttcttgataatcctaagaggtgttctaggaggagtactaataagaccataggcaattgctagacgc |
33779194 |
T |
|
| Q |
265 |
tcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatg |
314 |
Q |
| |
|
||||| || || |||| |||| || ||| | |||| |||||||||||| |
|
|
| T |
33779195 |
tcactgtggtagagcaaggcctgctcctttgcttcctgatcaatgtcatg |
33779244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 17993032 - 17992990
Alignment:
| Q |
62 |
actaccaataatctccacaagagcattttccatctttgaaatg |
104 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
17993032 |
actaccagtaatcaccacaagagcatttcccatctttgaaatg |
17992990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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