View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17844_high_37 (Length: 301)
Name: NF17844_high_37
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_high_37 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 927228 - 927508
Alignment:
| Q |
1 |
gcaggataactccatattacatcctgagaaagtactaaagaggaaacttgtgctttctgttttggtctcaacttgtgtttttccaactttatcttctcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
927228 |
gcaggataactccatattacatcctgagaaagtattaaggaggaaacttgcgctttctgttttggtctcaacttgtgtttttccaactttatcttctcat |
927327 |
T |
|
| Q |
101 |
gcgaagaccaaaaatatgaatccgtataatgaaaaacgtgtcttacaacaaaacaggaatatacaaaaacaaaataatgcaccagatgacttcccaaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
927328 |
gcgaagaccaaaaatatgaatccgtataatgaaaaacgtgtcttacaacaaaacaggaatatacaaaaacaaaataatgcaccagatgacttcccaaatt |
927427 |
T |
|
| Q |
201 |
ttattagagaaggtaatgttcatannnnnnnnncatacatgattatgttactttccgagttcaataagaaaatttctgttac |
282 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
927428 |
ttattagagaaggtaatgttcata-ttttttttcatacatgattatgttactttccgagttcaataagaaaatttctgttac |
927508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University