View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17844_high_38 (Length: 292)

Name: NF17844_high_38
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17844_high_38
NF17844_high_38
[»] chr7 (1 HSPs)
chr7 (8-292)||(25885802-25886086)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 25886086 - 25885802
Alignment:
Q  8 agagatgaacttgtaaaactagttatcattgataatggagacattgaataaaatttcttatacaccatattacatatgaattttccaattaagtaacaat 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25886086 agagaagaacttgtaaaactagttatcattgataatggagacattgaataaaatttcttatacaccatattacatatgaattttccaattaagtaacaat 25885987  T
Q  108 agcactagctaatgtgaatccttgtgatcagattctggagtgaatgagattgcaacaaaatttaaacataatttattaaatttcttggtcattcgaagat 207  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25885986 aacactggctaatgtgaatccttgtgatcagattctggagtgaatgagattgcaacaaagtttaaacataatttattaaatttcttggtcattcgaagat 25885887  T
Q  208 aaggtgagacttgtgatgatgatgacctttgtcaaaaaattgctgatttcaaaacagaagctaaagggacaaattccagatagga 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25885886 aaggtgagacttgtgatgatgatgacctttgtcaaaaaattgctgacttcaaaacagaagctaaagggacaaattccagatagga 25885802  T

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