View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17844_high_44 (Length: 266)

Name: NF17844_high_44
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17844_high_44
NF17844_high_44
[»] chr4 (1 HSPs)
chr4 (16-201)||(40823690-40823875)
[»] chr7 (14 HSPs)
chr7 (16-201)||(20289276-20289461)
chr7 (27-103)||(20062518-20062594)
chr7 (27-99)||(20303725-20303797)
chr7 (16-124)||(20168016-20168124)
chr7 (16-99)||(20284965-20285048)
chr7 (16-98)||(20264026-20264108)
chr7 (16-98)||(20231567-20231649)
chr7 (16-98)||(20243632-20243714)
chr7 (16-105)||(20279535-20279624)
chr7 (16-99)||(20005334-20005417)
chr7 (16-99)||(20294682-20294765)
chr7 (27-105)||(20273842-20273920)
chr7 (16-61)||(19939131-19939176)
chr7 (16-61)||(19970270-19970315)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 40823875 - 40823690
Alignment:
Q  16 aatatcagaccttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagtgtgccttcctcatcta 115  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40823875 aatatcagactttggtatggctagaatctttggagggagagaagataagaccaatactattagggttgtcggaacttagtaagtgtgccttcctcatcta 40823776  T
Q  116 attttatagtaaaatacttctcgtataatttattacataaaaaatacagcggttatatgtcccctgaatatgcgatgcaaggactg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40823775 attttatagtaaaatacttctcgtataatttattacataaaaaatgcagcggttatatgtcccctgaatatgcgatgcaaggactg 40823690  T

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Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 20289276 - 20289461
Alignment:
Q  16 aatatcagaccttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagtgtgccttcctcatcta 115  Q
    |||||||||| ||||||||||||||||||| | ||||||||||||||  |  |||||||| |||||||||||||||||||||||||||||||||  || |    
T  20289276 aatatcagactttggtatggctagaatcttcgaagggagagaagatacagaaaatactataagggttgtcggaacttagtaagtgtgccttccttgtcca 20289375  T
Q  116 attttatagtaaaatacttctcgtataatttattacataaaaaatacagcggttatatgtcccctgaatatgcgatgcaaggactg 201  Q
    |||||||||||||||||||   | ||||| | ||||||||||||| ||| |||||||| || || ||||| || ||||||||||||    
T  20289376 attttatagtaaaatacttggagaataatatgttacataaaaaatgcagtggttatatatctcccgaatacgcaatgcaaggactg 20289461  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 20062594 - 20062518
Alignment:
Q  27 ttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagtgtgc 103  Q
    |||| ||||||||||||||||| || ||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  20062594 ttggaatggctagaatctttggtggaagagaagatcaggccaatactactagggttgtcggaacttagtaagtgtgc 20062518  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 20303725 - 20303797
Alignment:
Q  27 ttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagt 99  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||  |||||||||||||||||||||||    
T  20303725 ttggtatggctagaatctttggagggagagaaaatcaggccaatactaccagggttgtcggaacttagtaagt 20303797  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 20168124 - 20168016
Alignment:
Q  16 aatatcagaccttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagtgtgccttcctcatcta 115  Q
    |||||||||  |||||||||||||||||||||||||  | |||||| ||||||||||||  ||| |||| ||||||||||||||| |||||||| ||| |    
T  20168124 aatatcagaatttggtatggctagaatctttggaggaggtgaagatcaggccaatactagcaggattgttggaacttagtaagtgcgccttccttatcca 20168025  T
Q  116 attttatag 124  Q
    || ||||||    
T  20168024 atattatag 20168016  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 20284965 - 20285048
Alignment:
Q  16 aatatcagaccttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagt 99  Q
    |||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||  ||| | |||||||||||||||||    
T  20284965 aatatcagactttggtatggttagaatctttggagggggagaagatcaggccaatactagaaggatagtcggaacttagtaagt 20285048  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 20264026 - 20264108
Alignment:
Q  16 aatatcagaccttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaag 98  Q
    |||||||||| |||||||||||||||||||||||||  | |||||| ||||||||||||  ||| ||||||||||||||||||    
T  20264026 aatatcagactttggtatggctagaatctttggaggaggtgaagatcaggccaatactagaaggattgtcggaacttagtaag 20264108  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 20231567 - 20231649
Alignment:
Q  16 aatatcagaccttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaag 98  Q
    |||||||||| |||||||||||||||||||||||||  | |||||| |||||||||| |  ||| ||||||||||||||||||    
T  20231567 aatatcagactttggtatggctagaatctttggaggaggtgaagatcaggccaataccagaaggattgtcggaacttagtaag 20231649  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 20243632 - 20243714
Alignment:
Q  16 aatatcagaccttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaag 98  Q
    |||||||||| ||||| |||||||||| ||||||||  | |||||| ||||||||||||  ||| ||||||||||||||||||    
T  20243632 aatatcagactttggtctggctagaatatttggaggaggtgaagatcaggccaatactagaaggattgtcggaacttagtaag 20243714  T

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Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 20279535 - 20279624
Alignment:
Q  16 aatatcagaccttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagtgtgcct 105  Q
    |||||||||| |||||||||||||||||||||||||| ||||  || ||| |||||||   ||  |||||||||| ||||||||||||||    
T  20279535 aatatcagactttggtatggctagaatctttggagggggagacaatcaggtcaatacttccagaattgtcggaacatagtaagtgtgcct 20279624  T

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Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 20005417 - 20005334
Alignment:
Q  16 aatatcagaccttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagt 99  Q
    |||||| ||| |||||||||| ||||||||||||| ||| |||||| | |||||||||   |||||||||||||| ||||||||    
T  20005417 aatatctgactttggtatggccagaatctttggagtgagtgaagatcatgccaatactcaaagggttgtcggaacatagtaagt 20005334  T

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Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 20294682 - 20294765
Alignment:
Q  16 aatatcagaccttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagt 99  Q
    |||||| ||| |||| |||||||||||||||||||| |||||| || ||||||||||||  ||| |||| ||||| ||||||||    
T  20294682 aatatcggactttggaatggctagaatctttggaggcagagaacatcaggccaatactagcaggattgttggaacgtagtaagt 20294765  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 20273842 - 20273920
Alignment:
Q  27 ttggtatggctagaatctttggagggagagaagataaggccaatactattagggttgtcggaacttagtaagtgtgcct 105  Q
    |||||||||||||||||||||||||| |||| ||| ||| ||||||    ||  |||| ||||||||||||||||||||    
T  20273842 ttggtatggctagaatctttggagggggagacgatcaggtcaatacctccagaattgttggaacttagtaagtgtgcct 20273920  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 19939131 - 19939176
Alignment:
Q  16 aatatcagaccttggtatggctagaatctttggagggagagaagat 61  Q
    |||||||||| |||||||||| ||||||||||||||||| ||||||    
T  19939131 aatatcagactttggtatggccagaatctttggagggagtgaagat 19939176  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 19970270 - 19970315
Alignment:
Q  16 aatatcagaccttggtatggctagaatctttggagggagagaagat 61  Q
    |||||||||| |||||||||| ||||||||||||||||| ||||||    
T  19970270 aatatcagactttggtatggccagaatctttggagggagtgaagat 19970315  T

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