View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17844_high_56 (Length: 238)

Name: NF17844_high_56
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17844_high_56
NF17844_high_56
[»] chr5 (2 HSPs)
chr5 (1-221)||(14004232-14004449)
chr5 (53-122)||(16230784-16230853)
[»] chr2 (3 HSPs)
chr2 (55-123)||(33657401-33657469)
chr2 (53-120)||(10231872-10231939)
chr2 (83-116)||(2377913-2377946)
[»] chr6 (1 HSPs)
chr6 (62-119)||(33817334-33817391)
[»] chr1 (4 HSPs)
chr1 (50-116)||(45112052-45112118)
chr1 (60-117)||(15867618-15867675)
chr1 (90-122)||(15920248-15920280)
chr1 (53-81)||(46189367-46189395)
[»] chr8 (1 HSPs)
chr8 (53-89)||(18103089-18103125)
[»] chr4 (2 HSPs)
chr4 (65-118)||(35656474-35656527)
chr4 (63-116)||(45677534-45677587)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14004449 - 14004232
Alignment:
Q  1 ctagtttaaaaagctttacaatatcattaaattacaaccaattaatttaataattttaaaaatagttatgattaaagtcaactattttaaatgatctcac 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  14004449 ctagtttaaaaaactttacaatatcattaaattacaaccaattaatttaataattttaaaaatagttatgattaaagtcaattattttaaatgatctcac 14004350  T
Q  101 gattatgattgattgacagtgtgtaaaacatatttactctttcaactactctccttctgcaacacccataacttcagccacccctccaccccgtgctcat 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004349 gattatgattgattgacagtgtataaaacatatttactctttca---actctccttctgcaacacccataacttcagccacccctccaccccgtgctcat 14004253  T
Q  201 gacaccaatacatgtagtctc 221  Q
    |||||||||||||||||||||    
T  14004252 gacaccaatacatgtagtctc 14004232  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 16230784 - 16230853
Alignment:
Q  53 attttaaaaatagttatgattaaagtcaactattttaaatgatctcacgattatgattgattgacagtgt 122  Q
    |||||| || |||||||||||||||||||  |||||||||||||   |||||| ||| ||||||||||||    
T  16230784 attttagaagtagttatgattaaagtcaaacattttaaatgatcagtcgattacgatcgattgacagtgt 16230853  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 33657469 - 33657401
Alignment:
Q  55 tttaaaaatagttatgattaaagtcaactattttaaatgatctcacgattatgattgattgacagtgtg 123  Q
    |||||||||||||||| |||||||||| |||||| |||||| | ||| |||||||||||||| ||||||    
T  33657469 tttaaaaatagttatggttaaagtcaaatattttcaatgatttgacggttatgattgattgatagtgtg 33657401  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 10231872 - 10231939
Alignment:
Q  53 attttaaaaatagttatgattaaagtcaactattttaaatgatctcacgattatgattgattgacagt 120  Q
    |||||| ||||||||||||| |||||||| |  ||| |||||||| | |||| |||||||||||||||    
T  10231872 attttagaaatagttatgataaaagtcaaatgattttaatgatctgatgattgtgattgattgacagt 10231939  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 2377913 - 2377946
Alignment:
Q  83 tattttaaatgatctcacgattatgattgattga 116  Q
    |||||| |||||||||||||||||||||||||||    
T  2377913 tatttttaatgatctcacgattatgattgattga 2377946  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 33817334 - 33817391
Alignment:
Q  62 atagttatgattaaagtcaactattttaaatgatctcacgattatgattgattgacag 119  Q
    |||| ||||||||||||||  |||||| |||||||| |||||||||||||||||||||    
T  33817334 atagatatgattaaagtcatgtatttttaatgatctaacgattatgattgattgacag 33817391  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 45112118 - 45112052
Alignment:
Q  50 ataattttaaaaatagttatgattaaagtcaactattttaaatgatctcacgattatgattgattga 116  Q
    |||| ||||||||||||||| |||||||||||  ||||||||  |||||| |||||||||| |||||    
T  45112118 ataactttaaaaatagttataattaaagtcaaacattttaaacaatctcatgattatgatttattga 45112052  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 15867618 - 15867675
Alignment:
Q  60 aaatagttatgattaaagtcaactattttaaatgatctcacgattatgattgattgac 117  Q
    ||||||||||||||||||||||  | ||| |||||| | |||||||||||||||||||    
T  15867618 aaatagttatgattaaagtcaaacagttttaatgatatgacgattatgattgattgac 15867675  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 15920248 - 15920280
Alignment:
Q  90 aatgatctcacgattatgattgattgacagtgt 122  Q
    |||||||||||||||||||||||||||| ||||    
T  15920248 aatgatctcacgattatgattgattgacggtgt 15920280  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 81
Target Start/End: Original strand, 46189367 - 46189395
Alignment:
Q  53 attttaaaaatagttatgattaaagtcaa 81  Q
    |||||||||||||||||||||||||||||    
T  46189367 attttaaaaatagttatgattaaagtcaa 46189395  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 18103125 - 18103089
Alignment:
Q  53 attttaaaaatagttatgattaaagtcaactatttta 89  Q
    |||||||||||||||||| ||||||||||||||||||    
T  18103125 attttaaaaatagttatggttaaagtcaactatttta 18103089  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 35656474 - 35656527
Alignment:
Q  65 gttatgattaaagtcaactattttaaatgatctcacgattatgattgattgaca 118  Q
    ||||||||||| ||||| |||||| |||||| | ||||||||||||||| ||||    
T  35656474 gttatgattaatgtcaaatatttttaatgatgtgacgattatgattgatcgaca 35656527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 45677534 - 45677587
Alignment:
Q  63 tagttatgattaaagtcaactattttaaatgatctcacgattatgattgattga 116  Q
    ||||||||| ||||||||| |||||| |||||| ||||  ||||||||||||||    
T  45677534 tagttatgaataaagtcaaatatttttaatgatttcacagttatgattgattga 45677587  T

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