View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17844_high_63 (Length: 219)

Name: NF17844_high_63
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17844_high_63
NF17844_high_63
[»] chr5 (36 HSPs)
chr5 (36-119)||(9636045-9636128)
chr5 (42-117)||(24792559-24792634)
chr5 (36-117)||(91316-91397)
chr5 (36-117)||(36581356-36581437)
chr5 (38-123)||(582752-582837)
chr5 (36-120)||(13734246-13734330)
chr5 (38-120)||(7144678-7144760)
chr5 (36-117)||(15639486-15639567)
chr5 (36-117)||(28904093-28904178)
chr5 (36-117)||(28940488-28940573)
chr5 (36-118)||(36624419-36624501)
chr5 (36-117)||(6865676-6865757)
chr5 (37-118)||(19437359-19437440)
chr5 (36-120)||(39595375-39595459)
chr5 (36-119)||(26627431-26627514)
chr5 (37-118)||(23991333-23991415)
chr5 (36-117)||(5698217-5698298)
chr5 (36-117)||(26626708-26626789)
chr5 (73-117)||(38387848-38387892)
chr5 (36-118)||(11880874-11880957)
chr5 (82-117)||(20040921-20040956)
chr5 (36-122)||(41460217-41460304)
chr5 (37-111)||(125194-125268)
chr5 (36-118)||(3722964-3723046)
chr5 (36-113)||(12612909-12612987)
chr5 (72-117)||(32732005-32732050)
chr5 (36-111)||(40566111-40566187)
chr5 (36-111)||(2117535-2117610)
chr5 (36-117)||(17063966-17064048)
chr5 (91-126)||(19824113-19824148)
chr5 (36-118)||(31284282-31284364)
chr5 (36-111)||(33567134-33567209)
chr5 (36-111)||(34381113-34381188)
chr5 (36-117)||(3960057-3960139)
chr5 (37-111)||(11306798-11306872)
chr5 (38-78)||(20125493-20125533)
[»] chr3 (43 HSPs)
chr3 (36-117)||(7867598-7867679)
chr3 (36-123)||(1901809-1901896)
chr3 (36-123)||(1911255-1911342)
chr3 (36-117)||(25959431-25959512)
chr3 (36-117)||(31326809-31326890)
chr3 (36-117)||(32795937-32796018)
chr3 (36-116)||(462291-462371)
chr3 (36-123)||(34607802-34607889)
chr3 (36-116)||(981571-981651)
chr3 (36-121)||(41717364-41717449)
chr3 (36-117)||(44593067-44593148)
chr3 (36-117)||(50294013-50294094)
chr3 (37-117)||(1295434-1295514)
chr3 (36-113)||(29800442-29800519)
chr3 (36-117)||(32981010-32981091)
chr3 (36-119)||(43409252-43409335)
chr3 (36-113)||(46473229-46473306)
chr3 (36-111)||(29706004-29706079)
chr3 (36-117)||(27198042-27198124)
chr3 (37-111)||(28300541-28300615)
chr3 (36-109)||(11173551-11173624)
chr3 (47-111)||(22153976-22154040)
chr3 (36-88)||(32656076-32656128)
chr3 (36-119)||(47276386-47276470)
chr3 (36-111)||(7231901-7231976)
chr3 (36-117)||(36869725-36869807)
chr3 (36-118)||(1031315-1031397)
chr3 (36-117)||(49457666-49457748)
chr3 (36-108)||(3483220-3483292)
chr3 (37-111)||(55344190-55344265)
chr3 (36-117)||(35987342-35987424)
chr3 (36-66)||(37303014-37303044)
chr3 (36-117)||(12048097-12048177)
chr3 (37-78)||(12762871-12762912)
chr3 (69-114)||(16267799-16267844)
chr3 (36-80)||(7140-7184)
chr3 (36-80)||(275327-275371)
chr3 (36-111)||(31249216-31249292)
chr3 (36-114)||(35376442-35376521)
chr3 (38-117)||(37035719-37035799)
chr3 (36-108)||(37215129-37215201)
chr3 (36-111)||(41111967-41112042)
chr3 (36-111)||(44127086-44127162)
[»] chr4 (40 HSPs)
chr4 (36-117)||(46567030-46567111)
chr4 (36-113)||(12638925-12639002)
chr4 (36-119)||(28676041-28676124)
chr4 (37-121)||(33438147-33438231)
chr4 (36-123)||(40847470-40847555)
chr4 (36-117)||(55510960-55511041)
chr4 (41-113)||(16508870-16508942)
chr4 (36-124)||(23836982-23837070)
chr4 (36-117)||(37977216-37977297)
chr4 (36-114)||(26440764-26440842)
chr4 (36-117)||(54801097-54801179)
chr4 (36-117)||(51389417-51389498)
chr4 (69-113)||(11997784-11997828)
chr4 (118-165)||(45779479-45779526)
chr4 (36-117)||(18874812-18874894)
chr4 (37-111)||(22071600-22071674)
chr4 (85-122)||(23094525-23094562)
chr4 (81-118)||(32621763-32621800)
chr4 (36-111)||(5234366-5234441)
chr4 (36-111)||(31275247-31275322)
chr4 (82-117)||(41010060-41010095)
chr4 (72-118)||(7795137-7795183)
chr4 (37-111)||(42915114-42915188)
chr4 (82-116)||(48783941-48783975)
chr4 (36-113)||(46173638-46173715)
chr4 (36-111)||(1580177-1580253)
chr4 (36-111)||(4896395-4896470)
chr4 (36-122)||(48148469-48148556)
chr4 (37-118)||(2613504-2613586)
chr4 (82-116)||(24209689-24209723)
chr4 (36-110)||(31658020-31658094)
chr4 (40-113)||(34259931-34260005)
chr4 (37-118)||(41609559-41609641)
chr4 (36-117)||(42510813-42510895)
chr4 (37-113)||(3475970-3476047)
chr4 (37-78)||(8456005-8456046)
chr4 (42-111)||(12241164-12241233)
chr4 (36-116)||(33860435-33860516)
chr4 (41-113)||(4577670-4577742)
chr4 (36-119)||(45678364-45678448)
[»] chr1 (47 HSPs)
chr1 (36-116)||(51339590-51339670)
chr1 (36-117)||(48872480-48872561)
chr1 (36-118)||(4604630-4604712)
chr1 (36-117)||(25061834-25061915)
chr1 (36-117)||(27352731-27352812)
chr1 (36-121)||(32821736-32821821)
chr1 (36-117)||(49621462-49621543)
chr1 (38-117)||(44730747-44730826)
chr1 (36-109)||(30530471-30530544)
chr1 (36-117)||(36930645-36930726)
chr1 (36-117)||(50527946-50528027)
chr1 (36-119)||(43611969-43612052)
chr1 (36-114)||(25098683-25098758)
chr1 (36-117)||(16658540-16658625)
chr1 (36-117)||(40595943-40596024)
chr1 (36-121)||(16987548-16987634)
chr1 (36-117)||(30687153-30687234)
chr1 (36-117)||(51172196-51172277)
chr1 (36-117)||(21255673-21255755)
chr1 (42-117)||(40605309-40605385)
chr1 (36-118)||(43640874-43640957)
chr1 (36-117)||(47059778-47059860)
chr1 (36-113)||(11460895-11460972)
chr1 (73-113)||(5043186-5043226)
chr1 (36-122)||(42299071-42299158)
chr1 (36-117)||(23554852-23554934)
chr1 (82-123)||(51571665-51571706)
chr1 (37-113)||(4511670-4511746)
chr1 (38-114)||(45349989-45350065)
chr1 (37-111)||(49453582-49453653)
chr1 (37-76)||(17167951-17167990)
chr1 (36-118)||(32966368-32966451)
chr1 (36-117)||(25239125-25239207)
chr1 (36-117)||(31244623-31244705)
chr1 (76-114)||(44959074-44959112)
chr1 (36-117)||(48325323-48325405)
chr1 (36-113)||(366758-366835)
chr1 (36-117)||(26839481-26839561)
chr1 (91-124)||(35043601-35043634)
chr1 (36-117)||(38019392-38019472)
chr1 (36-108)||(50659090-50659162)
chr1 (36-111)||(28457241-28457317)
chr1 (38-117)||(29253954-29254034)
chr1 (42-113)||(29294055-29294124)
chr1 (36-108)||(39010915-39010987)
chr1 (36-111)||(40610330-40610405)
chr1 (37-117)||(47015197-47015277)
[»] scaffold0166 (1 HSPs)
scaffold0166 (42-117)||(34942-35017)
[»] chr8 (29 HSPs)
chr8 (36-118)||(1796584-1796666)
chr8 (37-121)||(5782890-5782974)
chr8 (36-117)||(36740413-36740494)
chr8 (36-117)||(6005045-6005126)
chr8 (36-117)||(12045542-12045623)
chr8 (37-118)||(32725670-32725751)
chr8 (36-117)||(42443207-42443288)
chr8 (37-117)||(44380503-44380583)
chr8 (73-117)||(69515-69559)
chr8 (37-111)||(21273605-21273679)
chr8 (36-117)||(38174137-38174219)
chr8 (36-113)||(7678833-7678910)
chr8 (41-113)||(20284813-20284886)
chr8 (41-113)||(21071442-21071515)
chr8 (41-120)||(37392013-37392093)
chr8 (37-111)||(154392-154466)
chr8 (36-111)||(23258133-23258208)
chr8 (36-111)||(37524323-37524398)
chr8 (36-111)||(40413258-40413333)
chr8 (36-113)||(9895107-9895185)
chr8 (36-117)||(14548713-14548795)
chr8 (37-118)||(20994945-20995027)
chr8 (36-66)||(28473485-28473515)
chr8 (89-118)||(9314566-9314595)
chr8 (37-113)||(42651022-42651099)
chr8 (37-113)||(43605561-43605638)
chr8 (38-117)||(6849149-6849229)
chr8 (37-108)||(24503019-24503090)
chr8 (47-111)||(34996255-34996319)
[»] chr7 (28 HSPs)
chr7 (36-118)||(18157073-18157155)
chr7 (36-117)||(2469793-2469874)
chr7 (37-117)||(25940556-25940636)
chr7 (36-117)||(9031308-9031389)
chr7 (36-105)||(43444729-43444798)
chr7 (36-115)||(43107713-43107792)
chr7 (36-117)||(30941278-30941359)
chr7 (36-117)||(35098476-35098557)
chr7 (41-117)||(35072134-35072210)
chr7 (36-117)||(27688738-27688819)
chr7 (36-117)||(6655506-6655587)
chr7 (51-117)||(43079518-43079584)
chr7 (37-111)||(12141986-12142060)
chr7 (36-90)||(29034186-29034240)
chr7 (36-117)||(37392144-37392226)
chr7 (36-116)||(21588816-21588897)
chr7 (37-117)||(40693416-40693497)
chr7 (36-111)||(5978680-5978755)
chr7 (36-113)||(8792493-8792567)
chr7 (36-117)||(4678164-4678246)
chr7 (36-116)||(28110056-28110137)
chr7 (36-114)||(40077356-40077435)
chr7 (36-111)||(46651773-46651848)
chr7 (84-117)||(8061635-8061668)
chr7 (36-121)||(10591254-10591338)
chr7 (91-120)||(33056773-33056802)
chr7 (36-117)||(38023315-38023396)
chr7 (36-111)||(34348922-34348997)
[»] chr6 (17 HSPs)
chr6 (36-125)||(8173193-8173282)
chr6 (36-117)||(21443789-21443870)
chr6 (37-117)||(32729991-32730071)
chr6 (36-117)||(16533148-16533230)
chr6 (37-121)||(12187048-12187132)
chr6 (73-118)||(25567381-25567426)
chr6 (36-118)||(32644713-32644796)
chr6 (37-118)||(11742871-11742953)
chr6 (36-117)||(12044431-12044513)
chr6 (36-111)||(32253881-32253957)
chr6 (36-111)||(1897787-1897862)
chr6 (36-117)||(608549-608631)
chr6 (36-117)||(20712167-20712249)
chr6 (36-117)||(25561831-25561910)
chr6 (36-117)||(26101345-26101424)
chr6 (36-113)||(16336963-16337040)
chr6 (37-117)||(23653781-23653862)
[»] chr2 (29 HSPs)
chr2 (36-117)||(40951291-40951372)
chr2 (36-115)||(5167633-5167712)
chr2 (36-115)||(19668078-19668157)
chr2 (36-118)||(4842407-4842489)
chr2 (36-120)||(30856908-30856992)
chr2 (36-108)||(13553244-13553316)
chr2 (38-117)||(15283138-15283217)
chr2 (38-110)||(10288255-10288327)
chr2 (37-117)||(21805675-21805755)
chr2 (36-108)||(35792354-35792426)
chr2 (38-117)||(36763408-36763488)
chr2 (36-121)||(37631251-37631337)
chr2 (76-113)||(13553310-13553347)
chr2 (73-117)||(19637365-19637409)
chr2 (73-117)||(19835958-19836002)
chr2 (36-111)||(11164271-11164346)
chr2 (36-111)||(13711162-13711237)
chr2 (37-111)||(42665707-42665781)
chr2 (36-123)||(694370-694458)
chr2 (37-118)||(32128232-32128312)
chr2 (37-113)||(43791683-43791760)
chr2 (36-127)||(305847-305939)
chr2 (36-111)||(45515494-45515569)
chr2 (36-117)||(1574554-1574636)
chr2 (36-111)||(3091842-3091917)
chr2 (39-117)||(8352939-8353018)
chr2 (36-111)||(42251815-42251890)
chr2 (36-116)||(3959997-3960078)
chr2 (37-109)||(44059619-44059692)
[»] scaffold0002 (1 HSPs)
scaffold0002 (36-117)||(440819-440900)
[»] scaffold0184 (1 HSPs)
scaffold0184 (36-118)||(16482-16564)
[»] scaffold0078 (1 HSPs)
scaffold0078 (36-118)||(56280-56362)
[»] scaffold0115 (1 HSPs)
scaffold0115 (36-111)||(15084-15158)
[»] scaffold0036 (1 HSPs)
scaffold0036 (36-111)||(18105-18179)
[»] scaffold0003 (2 HSPs)
scaffold0003 (36-117)||(337219-337300)
scaffold0003 (37-66)||(119935-119964)
[»] scaffold0194 (1 HSPs)
scaffold0194 (36-78)||(29738-29780)
[»] scaffold0086 (1 HSPs)
scaffold0086 (36-117)||(17218-17300)
[»] scaffold0318 (1 HSPs)
scaffold0318 (49-117)||(18179-18248)
[»] scaffold0024 (1 HSPs)
scaffold0024 (37-78)||(60569-60610)
[»] scaffold0057 (1 HSPs)
scaffold0057 (36-120)||(38980-39064)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 9636128 - 9636045
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaa 119  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9636128 cattgtttttgaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaa 9636045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 24792559 - 24792634
Alignment:
Q  42 tttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24792559 ttttgaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 24792634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 91316 - 91397
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| ||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  91316 cattgtttttgaccaatgaaaagagagaaaagaaaggttgtcaaataggttgtatcaaatggttgttcaaatatcattgctc 91397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 36581437 - 36581356
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  36581437 cattgtttttgaccaataaaaagagaaaaaatgaaggttgtcaaataggttgtacaaaatggttgttcaaatatcattgctc 36581356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 123
Target Start/End: Complemental strand, 582837 - 582752
Alignment:
Q  38 ttgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaaaaa 123  Q
    |||||||| ||||||||||||||||| || ||||||||||||| |  |||||||||||| ||||||||||||||||||||||||||    
T  582837 ttgtttttgaccaatgaaaagagagagaaagaaggttgtcaaaaatcttgtaccaaatgattgttcaaatatcattgctcaaaaaa 582752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 13734330 - 13734246
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaa 120  Q
    |||||||||| |||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||| |||  ||||||||||    
T  13734330 cattgtttttgaccaatgaaaagagagaaaaggaaagttgtcaaatagattgtaccaaatggttgttcatatacaattgctcaaa 13734246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 7144678 - 7144760
Alignment:
Q  38 ttgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaa 120  Q
    ||||| || |||||| ||||||||||||| ||||||||||||| |||||||| |||||||||| |||||||||||||||||||    
T  7144678 ttgttattgaccaataaaaagagagaaaaagaaggttgtcaaaaaggttgtatcaaatggttgctcaaatatcattgctcaaa 7144760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 15639486 - 15639567
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    ||||||| || |||||||| ||| ||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15639486 cattgttcttcaccaatgagaagggagaagaagaaggttgtcaaaaaggttgtaccaaatggttgttcaaatatcattgctc 15639567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 28904093 - 28904178
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaa----tggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  28904093 cattgtttttgaccaataaaaaaagagaaaaggaaggttgtcaaataggttgtaccaaataattggttgttcaaatatcattgctc 28904178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 28940488 - 28940573
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaa----tggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  28940488 cattgtttttgaccaataaaaaaagagaaaaggaaggttgtcaaataggttgtaccaaataattggttgttcaaatatcattgctc 28940573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 36624419 - 36624501
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctca 118  Q
    |||||||||| ||||||||||||||||||||||||  ||||||||||  ||||| |||||| |||||||||||||||| ||||    
T  36624419 cattgtttttgaccaatgaaaagagagaaaatgaaaattgtcaaataaattgtatcaaatgcttgttcaaatatcattactca 36624501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 6865757 - 6865676
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| ||||||||||||||||||||| || |||||||||||| || || ||||| ||||||||||||| |||||||    
T  6865757 cattgtttttgaccaatgaaaagagagaaaataaaagttgtcaaatagattatatcaaatagttgttcaaatattattgctc 6865676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 19437359 - 19437440
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctca 118  Q
    ||||||||| |||||| |||||||||||||  |||||||||||| | ||||||| |||| ||||||||||||||| ||||||    
T  19437359 attgtttttgaccaatcaaaagagagaaaagaaaggttgtcaaaaatgttgtactaaatagttgttcaaatatcagtgctca 19437440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 39595375 - 39595459
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaa 120  Q
    |||||||||| ||||||||||||||||||||   | ||||||| | | |||||| ||||||||||||||||||||||| ||||||    
T  39595375 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatatcattactcaaa 39595459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 26627431 - 26627514
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaa 119  Q
    |||||||||| |||| | | || |||||||| |||||||||||   | |||||||||||| |||||||||||||||||||||||    
T  26627431 cattgtttttgaccattaataaaagagaaaaagaaggttgtcatgaaagttgtaccaaatagttgttcaaatatcattgctcaa 26627514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 23991333 - 23991415
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctca 118  Q
    ||||||||| ||||||||||||||||||||   ||||| ||||| | |||| || ||||||||||||||||||||||| ||||    
T  23991333 attgtttttgaccaatgaaaagagagaaaaatgaggttctcaaaaaagttgttagcaaatggttgttcaaatatcattcctca 23991415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 5698298 - 5698217
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||| | || |||||||| |||||||||||   | ||||||||||||| |||||| |||||||||||||    
T  5698298 cattgtttttgaccaataacaaaagagaaaaagaaggttgtcatgaaagttgtaccaaatgattgttctaatatcattgctc 5698217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 26626789 - 26626708
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||| | || ||||||||  ||||||||||   | |||||| |||||||||||||||||||||||||||    
T  26626789 cattgtttttgaccaataacaaaagagaaaaaaaaggttgtcatgaaagttgtaacaaatggttgttcaaatatcattgctc 26626708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 38387848 - 38387892
Alignment:
Q  73 ttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||| | ||||||||||||||||||||||||||||||||||||    
T  38387848 ttgtcataaaggttgtaccaaatggttgttcaaatatcattgctc 38387892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 11880957 - 11880874
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctca 118  Q
    |||||||||| |||||||| ||||||||||| |||||||||||   | |||| || |||||| ||||| |||||||||||||||    
T  11880957 cattgtttttgaccaatgagaagagagaaaaagaaggttgtcattgaagttgttagcaaatgattgttaaaatatcattgctca 11880874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 117
Target Start/End: Original strand, 20040921 - 20040956
Alignment:
Q  82 aggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    ||||||||||||||||||||||||||||||||||||    
T  20040921 aggttgtaccaaatggttgttcaaatatcattgctc 20040956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 41460217 - 41460304
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctcaaaaa 122  Q
    |||||||||| ||||||||||||||||||||   |||||||||   | |||| || ||||||||||||||||||| ||||||| ||||    
T  41460217 cattgtttttaaccaatgaaaagagagaaaaatgaggttgtcatgaaagttgttagcaaatggttgttcaaatattattgctctaaaa 41460304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 125194 - 125268
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    ||||||||| ||||||||||||||||||||   | ||||||  | | |||||| |||||||||||||||||||||    
T  125194 attgtttttgaccaatgaaaagagagaaaaaagaagttgtcgcaaaagttgtatcaaatggttgttcaaatatca 125268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 3723046 - 3722964
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctca 118  Q
    |||||||||  |||||| ||||||||||||||||| |||||||   | ||||| |||||||||||| || |||||||| ||||    
T  3723046 cattgttttggaccaataaaaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatatcattactca 3722964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 12612987 - 12612909
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtacc-aaatggttgttcaaatatcatt 113  Q
    |||||||||| |||||||| ||||||||| |  |||||||||  | | |||||||| ||||||||||||||||||||||    
T  12612987 cattgtttttgaccaatgagaagagagaacaacaaggttgtcccaaaagttgtaccaaaatggttgttcaaatatcatt 12612909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 32732050 - 32732005
Alignment:
Q  72 gttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    ||||||| | || |||||||||||||||||||||||||||||||||    
T  32732050 gttgtcataaagattgtaccaaatggttgttcaaatatcattgctc 32732005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 40566187 - 40566111
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaat-gaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| |||||||||||||||||||||  || ||||| ||| | |||||  ||||||| |||||||||||||    
T  40566187 cattgtttttgaccaatgaaaagagagaaaataaaaagttgttaaaaaagttgtctcaaatggatgttcaaatatca 40566111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 2117610 - 2117535
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||| ||||||||   | ||||||| | | |||||| ||||| |||||||||||||||    
T  2117610 cattgtttttaaccaatgaaaaaagagaaaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatca 2117535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 17063966 - 17064048
Alignment:
Q  36 cattgttttttaccaatgaaaagagaga-aaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||| | | |||| || |||||| |||||||| |||||||||||    
T  17063966 cattgtttttaaccaatgaaaagagagagaaatg-aggttgtcataaaagttgttagcaaatgattgttcaagtatcattgctc 17064048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 19824148 - 19824113
Alignment:
Q  91 caaatggttgttcaaatatcattgctcaaaaaattt 126  Q
    ||||||||||||||||||||||| ||||||||||||    
T  19824148 caaatggttgttcaaatatcatttctcaaaaaattt 19824113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 31284364 - 31284282
Alignment:
Q  36 cattgttttttaccaatgaaaagagaga-aaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctca 118  Q
    |||||||||| ||||||||||||||||| ||| ||| ||||||  | | ||||||  |||||||||||||||||||| ||||||    
T  31284364 cattgtttttaaccaatgaaaagagagagaaaagaa-gttgtcgcaaaagttgtatgaaatggttgttcaaatatcactgctca 31284282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 33567209 - 33567134
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||||||||||||   |  |||||| | | |||||| |||||||||||||| ||||||    
T  33567209 cattgtttttgaccaatgaaaagagagaaaaaagaaattgtcacaaaagttgtatcaaatggttgttcatatatca 33567134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 34381113 - 34381188
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||||||||||||   | ||||||| | |  || || |||||||||||||||||||||    
T  34381113 cattgtttttgaccaatgaaaagagagaaaaacgaagttgtcacaaaaattatatcaaatggttgttcaaatatca 34381188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 3960139 - 3960057
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| | ||||||||||||| ||||   |||||||||   | ||||| | |||||||||||||||||||||||||||    
T  3960139 cattgtttttgatcaatgaaaagagaaaaaaatgaggttgtcatgaaagttgttagcaaatggttgttcaaatatcattgctc 3960057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 11306798 - 11306872
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    ||||||||| ||||||||||||||||||||   | ||||||  | | |||||| ||||| |||||||||||||||    
T  11306798 attgtttttaaccaatgaaaagagagaaaaaagaagttgtctcaaaagttgtatcaaatagttgttcaaatatca 11306872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 20125493 - 20125533
Alignment:
Q  38 ttgttttttaccaatgaaaagagagaaaatgaaggttgtca 78  Q
    |||||||| |||||||| ||||||||||||||| |||||||    
T  20125493 ttgtttttgaccaatgagaagagagaaaatgaaagttgtca 20125533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 7867679 - 7867598
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7867679 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaatagattgtaccaaatggttgttcaaatatcattgctc 7867598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 1901896 - 1901809
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaaaaa 123  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  1901896 cattgtttttgaccaatgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatattattgctctaaaaa 1901809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 1911342 - 1911255
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaaaaa 123  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  1911342 cattgtttttgaccaatgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatattattgctctaaaaa 1911255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 25959512 - 25959431
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  25959512 cattgtttttgaccaatgaaaagagagaaaatgaaagttgtcaaataggttgtatcaaatggttgttcaaatatcattgctc 25959431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 31326809 - 31326890
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  31326809 cattgtttttgaccaatgaaaagagagaaaatgaagattgtcaaatagattgtaccaaatggttgttcaaatatcattgctc 31326890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 32795937 - 32796018
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32795937 cattgtttttgaccaataaaaagagagaaaatgaaagttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 32796018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 462371 - 462291
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgct 116  Q
    |||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  462371 cattgttttttatcaatgaaaagagagaaaagaaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgct 462291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 34607889 - 34607802
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaaaaa 123  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||    
T  34607889 cattgttttttatcaatgaaaagagagaaaatgaaggttgtcaaatagattgtaccaaatagttgttcaaatatcgttgctctaaaaa 34607802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 981571 - 981651
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgct 116  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  981571 cattatttttgaccaatgaaaagagagaaaatgaaggttgtcaaataggctgtactaaatggttgttcaaatatcattgct 981651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 41717364 - 41717449
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaaa 121  Q
    |||||||||| |||||||||||||||||||| |||| ||||||||||| || ||||||||||||| ||||||||||||| ||||||    
T  41717364 cattgtttttgaccaatgaaaagagagaaaaagaagattgtcaaatagattataccaaatggttgatcaaatatcattgttcaaaa 41717449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 44593067 - 44593148
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| ||||||||||| |||||||||||||||||||||| | ||||||||||||| || |||||||||||||||||    
T  44593067 cattgtttttgaccaatgaaaatagagaaaatgaaggttgtcaaaaaagttgtaccaaatgattattcaaatatcattgctc 44593148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 50294094 - 50294013
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| | |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  50294094 cattgtttttgatcaatgaaaagagagaaaaagaaagttgtcaaataagttgtaccaaatggttgttaaaatatcattgctc 50294013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 1295434 - 1295514
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    ||||||||| ||||||||||||| |||||| |||||||||||||   |||||| |||||||||||||||||||||||||||    
T  1295434 attgtttttgaccaatgaaaagatagaaaaagaaggttgtcaaaattgttgtagcaaatggttgttcaaatatcattgctc 1295514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 29800519 - 29800442
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 113  Q
    |||| ||||| |||||||||||||||||||| |||| || ||||||||||||||||||||  ||||||||||||||||    
T  29800519 cattatttttgaccaatgaaaagagagaaaaagaagattttcaaataggttgtaccaaataattgttcaaatatcatt 29800442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 32981091 - 32981010
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| || ||||| ||| ||||| | ||||||||||||| |  |||||||||||||||||||||||||||||||||    
T  32981091 cattgtttttgacaaatgagaagggagaagaagaaggttgtcaaaaaatttgtaccaaatggttgttcaaatatcattgctc 32981010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 43409335 - 43409252
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaa 119  Q
    |||||||||| ||||||||||||||||||||  ||| ||||||||||| || ||| ||||  |||||||||||||| |||||||    
T  43409335 cattgtttttgaccaatgaaaagagagaaaaaaaagattgtcaaatagattatactaaataattgttcaaatatcaatgctcaa 43409252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 46473229 - 46473306
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 113  Q
    |||||||||| ||||||||||||||||||||   | ||||||| | | |||||| |||||||||||||||||||||||    
T  46473229 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcataaaagttgtatcaaatggttgttcaaatatcatt 46473306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 29706004 - 29706079
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||||||||||||||||||||||||   | ||||||| | | |||||| ||||| |||||||||||||||    
T  29706004 cattgttttttaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatca 29706079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 27198124 - 27198042
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| ||||||||||||||||||||   ||||||||| | | |||| || |||||| ||||||||||||||||||||    
T  27198124 cattgtttttaaccaatgaaaagagagaaaaatgaggttgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 27198042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 28300615 - 28300541
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    ||||||||| ||||||||||||||||||||| || ||||||| |   |||||| || ||||||||||||||||||    
T  28300615 attgtttttgaccaatgaaaagagagaaaataaaagttgtcacaagagttgtatcatatggttgttcaaatatca 28300541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 11173551 - 11173624
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatat 109  Q
    |||||||||| ||||||||||||||||||||   | ||||||| | | |||||| |||||||||||||||||||    
T  11173551 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatat 11173624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 22153976 - 22154040
Alignment:
Q  47 accaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||||||||| ||||||| |||||||   | |||||||||||||||||| |||||||||    
T  22153976 accaatgaaaagagagcaaatgaaagttgtcattaaagttgtaccaaatggttgtacaaatatca 22154040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 32656076 - 32656128
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt 88  Q
    |||||||||| ||||||||||||| |||||| |||||| ||||||||||||||    
T  32656076 cattgtttttgaccaatgaaaagaaagaaaaggaaggtcgtcaaataggttgt 32656128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 47276386 - 47276470
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctcaa 119  Q
    |||||||||| |||||||| ||||||||||| | ||||||||| | | |||| || || ||| ||||||||||||||||||||||    
T  47276386 cattgtttttgaccaatgagaagagagaaaaaggaggttgtcatagaagttgttagcacatgattgttcaaatatcattgctcaa 47276470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 7231976 - 7231901
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||||||||||||   |  |||||| | | |||||| |||||||||||||||||||||    
T  7231976 cattgtttttgaccaatgaaaagagagaaaaaataaattgtcacaaaagttgtatcaaatggttgttcaaatatca 7231901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 36869807 - 36869725
Alignment:
Q  36 cattgttttttaccaatgaaaagagaga-aaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| ||||||||||||||||| |||||| ||||||||   | ||||| | |||||||||||||||||||||||||||    
T  36869807 cattgtttttgaccaatgaaaagagagagaaatga-ggttgtcatgaaagttgttagcaaatggttgttcaaatatcattgctc 36869725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 1031397 - 1031315
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctca 118  Q
    |||||||||| |||||| | |||| ||||||  || ||||||| | | ||||||||||||  |||||||||||||||||||||    
T  1031397 cattgtttttgaccaataagaagaaagaaaaataaagttgtcataaaagttgtaccaaataattgttcaaatatcattgctca 1031315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 49457666 - 49457748
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggtt-gtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| ||||||||||||||||||||   ||||||||| | | |||  || |||||| ||||||||||||||||||||    
T  49457666 cattgtttttgaccaatgaaaagagagaaaaatgaggttgtcatagaagttattagcaaatgtttgttcaaatatcattgctc 49457748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 3483220 - 3483292
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaata 108  Q
    |||| ||||||| ||||||||||||||||||  || ||||||| | | |||||| |||||| |||||||||||    
T  3483220 cattattttttatcaatgaaaagagagaaaaaaaaagttgtcacagatgttgtatcaaatgattgttcaaata 3483292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 55344265 - 55344190
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtca-aataggttgtaccaaatggttgttcaaatatca 111  Q
    ||||||||| ||||||||||||||||||||  || ||||||| || | ||||||  |||| |||||||||||||||    
T  55344265 attgtttttaaccaatgaaaagagagaaaagaaaagttgtcataaaatgttgtatgaaatagttgttcaaatatca 55344190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 35987342 - 35987424
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctc 117  Q
    |||| ||||| |||||| |||||| |||||| ||||||||||| | |  |||| | |||||| ||||||||||||||||||||    
T  35987342 cattatttttgaccaataaaaagatagaaaaagaaggttgtcataaaaattgtaagcaaatgattgttcaaatatcattgctc 35987424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 37303044 - 37303014
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaa 66  Q
    |||||||||||||||||||||||||||||||    
T  37303044 cattgttttttaccaatgaaaagagagaaaa 37303014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 12048097 - 12048177
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||| |||||||||||||||||||| |||||  || ||| | ||| ||||||| | |||| ||| |||||||||||||||||    
T  12048097 cattattttttaccaatgaaaagag-gaaaaataaagttctaaaaaaggttgtgctaaatagttattcaaatatcattgctc 12048177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 12762912 - 12762871
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtca 78  Q
    |||||||||||||||| ||||||||||||| ||| |||||||    
T  12762912 attgttttttaccaataaaaagagagaaaaagaaagttgtca 12762871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 16267844 - 16267799
Alignment:
Q  69 aaggttgtcaaataggttgtaccaaatggttgttcaaatatcattg 114  Q
    |||||||||||| | ||||||||||||| |||||||||||| ||||    
T  16267844 aaggttgtcaaaaatgttgtaccaaatgattgttcaaatattattg 16267799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 7184 - 7140
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaa 80  Q
    |||||||||| |||||| |||| |||||||| |||||||||||||    
T  7184 cattgtttttgaccaataaaaaaagagaaaaagaaggttgtcaaa 7140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 275327 - 275371
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaa 80  Q
    |||| ||||| |||||||| |||| ||||||||||||||||||||    
T  275327 cattatttttgaccaatgagaagaaagaaaatgaaggttgtcaaa 275371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 31249292 - 31249216
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtca-aataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||||||| ||||  || |||||||  | | ||||||  ||||||||||||||||||||    
T  31249292 cattgtttttaaccaatgaaaagagaaaaaaaaaaagttgtcaccaaaagttgtatgaaatggttgttcaaatatca 31249216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 35376521 - 35376442
Alignment:
Q  36 cattgttttttaccaatgaaaagagaga-aaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattg 114  Q
    |||||||||| |||||| |||||||||| |||||| |||||||| | | ||||| | ||||||||| ||||||||||||||    
T  35376521 cattgtttttgaccaataaaaagagagagaaatga-ggttgtcataaaagttgttaacaaatggttcttcaaatatcattg 35376442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 37035719 - 37035799
Alignment:
Q  38 ttgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctc 117  Q
    |||||||| |||||| ||||||||| |||  || ||||||||  | ||||| | ||||| |||||||||||||||||||||    
T  37035719 ttgtttttaaccaataaaaagagaggaaaaaaaagttgtcaagaaagttgttagcaaatagttgttcaaatatcattgctc 37035799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 37215201 - 37215129
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaata 108  Q
    |||||||||| ||||||||||||||||||||   | ||||||| | | |||||  || |||||||||||||||    
T  37215201 cattgtttttgaccaatgaaaagagagaaaaaataagttgtcacaaaagttgtctcatatggttgttcaaata 37215129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 41112042 - 41111967
Alignment:
Q  36 cattgttttttaccaatgaaaagagaga-aaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||||||||| ||| ||| ||||| ||| | |||||  ||||||| |||||||||||||    
T  41112042 cattgtttttgaccaatgaaaagagagagaaaagaa-gttgttaaaaaagttgtctcaaatggatgttcaaatatca 41111967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 44127162 - 44127086
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatca 111  Q
    |||||||||| |||||||| |||||||||||   ||||||||| | | |||| || ||||| |||||||||||||||    
T  44127162 cattgtttttaaccaatgagaagagagaaaaatgaggttgtcataaaagttgttagcaaatagttgttcaaatatca 44127086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 46567030 - 46567111
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46567030 cattgtttttgaccaatgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 46567111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 12638925 - 12639002
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 113  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  12638925 cattgtttttgaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaacaaatagttgttcaaatatcatt 12639002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 28676124 - 28676041
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaa 119  Q
    |||||||||| |||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||||||||    
T  28676124 cattgtttttgaccaatgaaaagagagaaaaagaaggttgtcaaaaaggttgtacaaaatggttgtttaaatatcattgctcaa 28676041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 33438147 - 33438231
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaaa 121  Q
    ||||||||| |||||| ||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||||||    
T  33438147 attgtttttgaccaataaaaagagagaaaatgaaggttatcaaaaaagttgtaccaaatggttgtttaaatatcattgctcaaaa 33438231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 40847470 - 40847555
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaaaaa 123  Q
    |||||||||||||||||||||||||| |||  ||||||||||||| |||||||  |||||||||||||||||||||||||||||||||    
T  40847470 cattgttttttaccaatgaaaagagaaaaa--gaaggttgtcaaaaaggttgtgtcaaatggttgttcaaatatcattgctcaaaaaa 40847555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 55510960 - 55511041
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||| |||||| |||||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||    
T  55510960 cattgtttttgaccattgaaaatagagaaaaggaaagttttcaaataagttgtaccaaatggttgttcaaatatcattgctc 55511041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 16508942 - 16508870
Alignment:
Q  41 ttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 113  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||| ||||    
T  16508942 tttttgaccaatgaaaagagagaaaatgaaggttgtcaagtaggttgtaccaaattattgttcaaatagcatt 16508870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 23837070 - 23836982
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaaaaat 124  Q
    |||||||||| || ||| ||||||||||||| |||  || ||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  23837070 cattgtttttgactaattaaaagagagaaaaagaaaattatcaaataagttgtaccaaatgattgtttaaatatcattgctcaaaaaat 23836982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 37977216 - 37977297
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||| |||||||| ||||||||||||||||   ||  |||||||| | ||||||||||||||||||||||||||||||||||    
T  37977216 cattattttttactaatgaaaagagagaaagaaaaaattgtcaaaaatgttgtaccaaatggttgttcaaatatcattgctc 37977297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 26440764 - 26440842
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattg 114  Q
    |||||||||| |||||| |||| | ||||||| ||||||||||||||| |||||| ||||| || ||||||||||||||    
T  26440764 cattgtttttgaccaataaaaaaaaagaaaataaaggttgtcaaatagattgtacaaaatgattcttcaaatatcattg 26440842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 54801097 - 54801179
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaa-tgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||| ||||| |||||| |||||||| |||| ||||||||||||||||  |||||||||||  ||||||||||||||||||||    
T  54801097 cattatttttgaccaataaaaagagaaaaaaatgaaggttgtcaaataaattgtaccaaataattgttcaaatatcattgctc 54801179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 51389417 - 51389498
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    ||||||||||||| |||||||||||||||||   | ||||||| | | |||||| ||||||||||||||||||||| |||||    
T  51389417 cattgttttttactaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatatcactgctc 51389498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 11997784 - 11997828
Alignment:
Q  69 aaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  11997784 aaggatgtcaaataggttgtaccaaatggttgttcaaatatcatt 11997828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 45779526 - 45779479
Alignment:
Q  118 aaaaaatttaagattgacgtttttgtctctctttggatggtcacatca 165  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||    
T  45779526 aaaaaatttaagattggcgtttgtgtctctctttggatggtcacatca 45779479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 18874894 - 18874812
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||||| ||||||||||| | ||||||||| | | |||| || |||||| ||||||||||||||||||||    
T  18874894 cattgtttttgaccaatgagaagagagaaaaaggaggttgtcataaaagttgttagcaaatgattgttcaaatatcattgctc 18874812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 22071600 - 22071674
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    ||||||||| |||||| | ||||||||||| ||| ||||||||| | |||||||||||||||||| | |||||||    
T  22071600 attgtttttaaccaataagaagagagaaaaagaaagttgtcaaacaagttgtaccaaatggttgtactaatatca 22071674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 23094525 - 23094562
Alignment:
Q  85 ttgtaccaaatggttgttcaaatatcattgctcaaaaa 122  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23094525 ttgtaccaaatggttgttcaaatatcattgctcaaaaa 23094562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 32621763 - 32621800
Alignment:
Q  81 taggttgtaccaaatggttgttcaaatatcattgctca 118  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32621763 taggttgtaccaaatggttgttcaaatatcattgctca 32621800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 5234441 - 5234366
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| |||||| |||||||||||||  ||  |||||| | | |||||| |||||||||||||||||||||    
T  5234441 cattgtttttgaccaataaaaagagagaaaaaaaaaattgtcacaaaagttgtatcaaatggttgttcaaatatca 5234366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 31275247 - 31275322
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||||||||||||   |  |||||| | | |||||| |||||||||||||||||||||    
T  31275247 cattgtttttgaccaatgaaaagagagaaaaaagaaattgtcacaaaagttgtatcaaatggttgttcaaatatca 31275322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 117
Target Start/End: Complemental strand, 41010095 - 41010060
Alignment:
Q  82 aggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    ||||||||||||||||||||||||||||||||||||    
T  41010095 aggttgtaccaaatggttgttcaaatatcattgctc 41010060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 7795137 - 7795183
Alignment:
Q  72 gttgtcaaataggttgtaccaaatggttgttcaaatatcattgctca 118  Q
    ||||||| | |||||||| ||||||||||||||||||||||||||||    
T  7795137 gttgtcataaaggttgtatcaaatggttgttcaaatatcattgctca 7795183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 42915188 - 42915114
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    ||||||||| ||||||||||||||||||||   | ||||||| | | |||||| ||||| |||||||||||||||    
T  42915188 attgtttttaaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatca 42915114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 116
Target Start/End: Original strand, 48783941 - 48783975
Alignment:
Q  82 aggttgtaccaaatggttgttcaaatatcattgct 116  Q
    |||||||||||||||||||||||||||||||||||    
T  48783941 aggttgtaccaaatggttgttcaaatatcattgct 48783975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 46173638 - 46173715
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 113  Q
    |||||||||||||||||||||||||| ||||   |  |||||| | | |||||| ||||||||| |||||||||||||    
T  46173638 cattgttttttaccaatgaaaagagaaaaaaaagaaattgtcacaaaagttgtatcaaatggttattcaaatatcatt 46173715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 1580253 - 1580177
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtca-aataggttgtaccaaatggttgttcaaatatca 111  Q
    ||||||||||  |||||||||||||||||||  || ||||||| || | ||||||  ||||||||||||||||||||    
T  1580253 cattgtttttatccaatgaaaagagagaaaaaaaaagttgtcacaaaaagttgtatgaaatggttgttcaaatatca 1580177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 4896470 - 4896395
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||||||||||||   ||||||||| | | |||||  ||||| | |||||||||||||    
T  4896470 cattgtttttgaccaatgaaaagagagaaaaaagaggttgtcacaaaagttgtttcaaatagatgttcaaatatca 4896395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 48148469 - 48148556
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctcaaaaa 122  Q
    |||| ||||||| ||||||||||||||||||   ||||| ||| | | ||||| | |||||||||||||||||| |||||||| ||||    
T  48148469 cattattttttatcaatgaaaagagagaaaaatgaggttatcataaaagttgttagcaaatggttgttcaaataccattgctctaaaa 48148556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 2613586 - 2613504
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctca 118  Q
    ||||||||| |||||| |||||||||| || | || |||||| | | ||||| | ||||||||||||||||||||||| ||||    
T  2613586 attgtttttgaccaattaaaagagagagaaagtagattgtcacaaaagttgttatcaaatggttgttcaaatatcattactca 2613504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 116
Target Start/End: Complemental strand, 24209723 - 24209689
Alignment:
Q  82 aggttgtaccaaatggttgttcaaatatcattgct 116  Q
    ||||||||||||||||||||| |||||||||||||    
T  24209723 aggttgtaccaaatggttgtttaaatatcattgct 24209689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 31658020 - 31658094
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatc 110  Q
    |||||||||| |||||||||||| |||||||   | ||||||| | | | |||| ||||||||||||||||||||    
T  31658020 cattgtttttgaccaatgaaaagtgagaaaaaagaagttgtcacaaaagctgtatcaaatggttgttcaaatatc 31658094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 34259931 - 34260005
Alignment:
Q  40 gttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcatt 113  Q
    |||||| |||||| | ||||||||||| |||| |||||| | | ||||| ||||||||||||| |||||||||||    
T  34259931 gtttttgaccaataagaagagagaaaaagaagtttgtcacaaaagttgtcaccaaatggttgtacaaatatcatt 34260005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 41609641 - 41609559
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctca 118  Q
    ||||||||| |||||| ||||||||||||| | || |||||| | |  |||| | ||||||||||||||||||||||| ||||    
T  41609641 attgtttttgaccaattaaaagagagaaaaagtagattgtcacaaaaattgtcatcaaatggttgttcaaatatcattactca 41609559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 42510895 - 42510813
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| || |||||||| |||||||| | |||| ||||   | ||||| | |||||||||||||||||||||||||||    
T  42510895 cattgtttttgacaaatgaaaatagagaaaaaggaggtcgtcatcaaagttgttagcaaatggttgttcaaatatcattgctc 42510813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 3475970 - 3476047
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcatt 113  Q
    ||||||||| ||||||||||||| ||||||  |||||||||| | | ||||| | |||||||||||  ||||||||||    
T  3475970 attgtttttgaccaatgaaaagaaagaaaaataaggttgtcacaaatgttgtcatcaaatggttgtcaaaatatcatt 3476047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 8456005 - 8456046
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtca 78  Q
    ||||||||| |||||| ||||||||||||| |||||||||||    
T  8456005 attgtttttgaccaataaaaagagagaaaaagaaggttgtca 8456046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 12241164 - 12241233
Alignment:
Q  42 tttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    ||||||||||| |||||||||||||  || ||||||| | ||||||||| |||  ||||| |||||||||    
T  12241164 tttttaccaatcaaaagagagaaaaataaagttgtcataaaggttgtacaaaagagttgtacaaatatca 12241233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 33860516 - 33860435
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgct 116  Q
    |||||||||| |||||| | |||||||||||   |||||||||   | ||||| | ||||||||||||||||||||||||||    
T  33860516 cattgtttttgaccaataataagagagaaaaatgaggttgtcatcaaagttgttagcaaatggttgttcaaatatcattgct 33860435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 4577670 - 4577742
Alignment:
Q  41 ttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 113  Q
    |||||||||||||||||||||| | |  |||||||||  | | |||||| ||||  |||||||||||||||||    
T  4577670 ttttttaccaatgaaaagagagcacaacaaggttgtcccaaaagttgtagcaaaaagttgttcaaatatcatt 4577742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 45678364 - 45678448
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtacc-aaatggttgttcaaatatcattgctcaa 119  Q
    |||||||||| |||||| ||||||||||| |  ||||||||   | | |||||||| |||| ||||||||||||||||| |||||    
T  45678364 cattgtttttgaccaataaaaagagagaacaacaaggttgtaccaaaagttgtaccaaaatagttgttcaaatatcattactcaa 45678448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 51339670 - 51339590
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgct 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51339670 cattgtttttgaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatagttgttcaaatatcattgct 51339590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 48872480 - 48872561
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48872480 cattgtttttgaccaatgaaaagagagaaaaggaaggttgtcaaataggttgtatcaaatggttgttcaaatatcattgctc 48872561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 4604630 - 4604712
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctca 118  Q
    |||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  4604630 cattgtttttgaccaatgaaaagagagaaaaagaaggttgtcaaacaggttgtaccaaatcgttgttcaaatatcattgctca 4604712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 25061834 - 25061915
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  25061834 cattgtttttaaccaatgaaaagagagaaaaagaaggttgtcaaatagattgtatcaaatggttgttcaaatatcattgctc 25061915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 27352731 - 27352812
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| ||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27352731 cattgtttttgaccaatgaaaagagagaaaagaaaggttgtcgaataggttgtaccaaatggttgttcaaatatcattgctc 27352812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 32821736 - 32821821
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaaa 121  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||| || |||||||||||||||||||||||| ||||||    
T  32821736 cattgttttttaccaatgaaaagagagaaaatgaatgttgtcaaataagttttatcaaatggttgttcaaatatcattgttcaaaa 32821821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 49621462 - 49621543
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  49621462 cattgtttttgaccaataaaaagagagaaaatgaagattgtcaaatagattgtaccaaatggttgttcaaatatcattgctc 49621543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 44730747 - 44730826
Alignment:
Q  38 ttgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44730747 ttgtttttaaccaatgaaaaaagagaaaaagaaggttgtcaaaaaggttgtaccaaatggttgttcaaatatcattgctc 44730826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 30530544 - 30530471
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatat 109  Q
    |||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  30530544 cattgtttttgaccaatgaaaagagagaaaaggaaagttgtcaaataggttgtaccaaatggttgttcaaatat 30530471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 36930726 - 36930645
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  36930726 cattgtttttgaccaataaaaagagagaaaaagaaggttgtcaaaaaggttgtacaaaatggttgttcaaatatcattgctc 36930645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 50528027 - 50527946
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  50528027 cattgtttttgaccaatgaaaagagagaaaaagaaggttgtcaaatagattgtagcaaatggttgttcaaatatgattgctc 50527946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 43612052 - 43611969
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaa 119  Q
    |||||||||| |||||||||||||||||| | |||| || ||||||||||||||||||||||||| ||||||||||||||||||    
T  43612052 cattgtttttgaccaatgaaaagagagaagaggaagattatcaaataggttgtaccaaatggttggtcaaatatcattgctcaa 43611969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 36 - 114
Target Start/End: Complemental strand, 25098758 - 25098683
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattg 114  Q
    |||||||||| |||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||||||||||    
T  25098758 cattgtttttgaccaatgaaaagagagaaaaggaaggttgtca---aggttgtaccaaatggttgttcaaatatcattg 25098683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 16658540 - 16658625
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaa----tggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  16658540 cattgtttttgaccaataaaaaaagagaaaaggaaggttgtcaaataggttgtaccaaataattggttgttcaaatatcattgctc 16658625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 40596024 - 40595943
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| ||||||||||||||||||||  |   |||||||| |||||||| |||||||||||||||||||||||||||    
T  40596024 cattgtttttgaccaatgaaaagagagaaaaaaattattgtcaaaaaggttgtatcaaatggttgttcaaatatcattgctc 40595943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 16987548 - 16987634
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctcaaaa 121  Q
    |||||||||| |||||||||||||||||||| | ||||||||| | |  ||| || |||||||||||||||||||||||||||||||    
T  16987548 cattgtttttgaccaatgaaaagagagaaaaaggaggttgtcatagaaattgttagcaaatggttgttcaaatatcattgctcaaaa 16987634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 30687153 - 30687234
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| | |||||| ||| ||||| | ||||||||||||| |  |||||||||||||||||||||||||||||||||    
T  30687153 cattgtttttaaacaatgagaagggagaagaagaaggttgtcaaaaaatttgtaccaaatggttgttcaaatatcattgctc 30687234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 51172277 - 51172196
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||| || | ||||||||  ||| ||||||||||| |||||||||||| ||||||||||||||||||||    
T  51172277 cattgtttttgaccaataaacaaagagaaaagaaagattgtcaaatagattgtaccaaatgattgttcaaatatcattgctc 51172196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 21255755 - 21255673
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||||| ||||||||||| | ||||||||| | | ||||| | |||||||||||||||||||||||||||    
T  21255755 cattgtttttgaccaatgagaagagagaaaaaggaggttgtcataaaagttgttagcaaatggttgttcaaatatcattgctc 21255673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 40605385 - 40605309
Alignment:
Q  42 tttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctc 117  Q
    |||| |||||||| ||||||||||| ||||||||||| | | ||||| | |||||||||||||||||||||||||||    
T  40605385 ttttgaccaatgagaagagagaaaaagaaggttgtcataaaagttgttagcaaatggttgttcaaatatcattgctc 40605309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 43640957 - 43640874
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctca 118  Q
    |||||||||| ||||||||||||||||||||   |||||||||   | ||||| | ||||||||||||||||||||||||||||    
T  43640957 cattgtttttgaccaatgaaaagagagaaaaatgaggttgtcatgaaagttgttagcaaatggttgttcaaatatcattgctca 43640874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 47059860 - 47059778
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| ||||||||||||||||||||  ||| ||||||   | ||||| | |||||||||||||||||||||||||||    
T  47059860 cattgtttttgaccaatgaaaagagagaaaaataagattgtcatgaaagttgttagcaaatggttgttcaaatatcattgctc 47059778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 11460895 - 11460972
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 113  Q
    |||| ||||| |||||| |||||| ||| || ||||||||||||| | |||||| ||||| |||||||||||||||||    
T  11460895 cattatttttgaccaataaaaagaaagagaaagaaggttgtcaaaaaagttgtatcaaattgttgttcaaatatcatt 11460972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 5043186 - 5043226
Alignment:
Q  73 ttgtcaaataggttgtaccaaatggttgttcaaatatcatt 113  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  5043186 ttgtcaaataagttgtaccaaatggttgttcaaatatcatt 5043226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 42299158 - 42299071
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtc-aaataggttgtaccaaatggttgttcaaatatcattgctcaaaaa 122  Q
    |||| ||||| |||||| ||||||||||||| |||| ||||| ||| | ||||||| ||||  |||||||||||||||||||| ||||    
T  42299158 cattatttttgaccaataaaaagagagaaaaagaagattgtcaaaaaatgttgtactaaataattgttcaaatatcattgctctaaaa 42299071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 23554852 - 23554934
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||||||| |||||||||   |||||||||   | ||||| | |||||||||||||||||||||||||||    
T  23554852 cattgtttttaaccaatgaaaggagagaaaaatgaggttgtcatgaaagttgttagcaaatggttgttcaaatatcattgctc 23554934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 51571665 - 51571706
Alignment:
Q  82 aggttgtaccaaatggttgttcaaatatcattgctcaaaaaa 123  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  51571665 aggttgtaccaaatggttgttcaaatatcattgttctaaaaa 51571706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 4511746 - 4511670
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 113  Q
    ||||||||  |||||||| |||||| |||||||| |||||||  || ||||| |||||||||||| || ||||||||    
T  4511746 attgttttggaccaatgagaagagaaaaaatgaaagttgtcatctaagttgtcccaaatggttgtacatatatcatt 4511670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 45350065 - 45349989
Alignment:
Q  38 ttgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattg 114  Q
    |||||||  ||||||||||||||||| ||  ||| |||||||| || |||||||||||| ||||| |||| ||||||    
T  45350065 ttgttttcgaccaatgaaaagagagagaaaaaagattgtcaaaaagattgtaccaaatgattgttaaaatgtcattg 45349989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 49453582 - 49453653
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    ||||||||| |||||||||||||||||||   || ||||||| | | |||||| ||||| |||||||||||||||    
T  49453582 attgtttttaaccaatgaaaagagagaaa---aaagttgtcacaaaagttgtatcaaatagttgttcaaatatca 49453653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 17167951 - 17167990
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgt 76  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  17167951 attgttttttaccaatgaaaagagagaagatgtaggttgt 17167990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 32966368 - 32966451
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctca 118  Q
    |||||||||| |||||| |||||||||||||   ||||||||| | | |||| ||  |||| ||||||||||||||||||||||    
T  32966368 cattgtttttgaccaataaaaagagagaaaaatgaggttgtcacaaaagttgttagtaaatagttgttcaaatatcattgctca 32966451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 25239207 - 25239125
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaag-gttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||| | |||||||||||  ||  ||| ||| | |||||||||| ||| |||||||||||||||||||||    
T  25239207 cattgtttttgaccaataagaagagagaaaaaaaaaagttatcataaaggttgtacccaatagttgttcaaatatcattgctc 25239125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 31244705 - 31244623
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaa-tggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||||| ||||||||| |  | |||||||  | | ||||||||||| | |||||||||||||||||||||    
T  31244705 cattgtttttgaccaatgagaagagagaacaacatggttgtcccaaatgttgtaccaaaatagttgttcaaatatcattgctc 31244623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 44959074 - 44959112
Alignment:
Q  76 tcaaataggttgtaccaaatggttgttcaaatatcattg 114  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  44959074 tcaaataagttgtatcaaatggttgttcaaatatcattg 44959112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 48325323 - 48325405
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||||| ||||||||||| | |||||||||   | |||| || |||||||||||| |||||||| |||||    
T  48325323 cattgtttttgaccaatgagaagagagaaaaaggaggttgtcattgaagttgttagcaaatggttgttaaaatatcactgctc 48325405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 366758 - 366835
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 113  Q
    |||||||||| |||||||||||||||| |||  || ||||||| ||| |||||  ||  |||||||||||||| ||||    
T  366758 cattgtttttgaccaatgaaaagagaggaaaaaaaagttgtcacataagttgtctcatttggttgttcaaataacatt 366835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 26839481 - 26839561
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    ||||||||||||| ||| |||| |||||||| ||||||||||| | | ||| ||||||||| ||||  ||||||| ||||||    
T  26839481 cattgttttttactaataaaaa-agagaaaacgaaggttgtcataaaagttataccaaatgattgtataaatatcgttgctc 26839561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 124
Target Start/End: Complemental strand, 35043634 - 35043601
Alignment:
Q  91 caaatggttgttcaaatatcattgctcaaaaaat 124  Q
    |||||||||||||||||||||||||||| |||||    
T  35043634 caaatggttgttcaaatatcattgctcataaaat 35043601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 38019472 - 38019392
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||| ||||| |||||| | || |||||||| |||||||||||   |  ||||||||||||||||||||||||||| |||||    
T  38019472 cattatttttgaccaataacaaaagagaaaaagaaggttgtcatcaaa-ttgtaccaaatggttgttcaaatatcactgctc 38019392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 50659162 - 50659090
Alignment:
Q  36 cattgttttttaccaatgaaaagagaga-aaatgaaggttgtcaaataggttgtaccaaatggttgttcaaata 108  Q
    |||||||||| ||||||||||||||||| ||| ||| ||||||| ||| |||||  || |||||||||||||||    
T  50659162 cattgtttttgaccaatgaaaagagagagaaaagaa-gttgtcacataagttgtttcatatggttgttcaaata 50659090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 28457317 - 28457241
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtacc-aaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||| |||||| |  || ||||||  | |||||||||| ||||||||||| ||||||||    
T  28457317 cattgtttttgaccaatgaaaatagagaacaataaagttgtctcaaaggttgtaccaaaatggttgttaaaatatca 28457241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 29254034 - 29253954
Alignment:
Q  38 ttgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctc 117  Q
    |||||||| | |||||| ||||||||||| | |||||||||   | ||||| | ||||| |||||||||||||||||||||    
T  29254034 ttgtttttgatcaatgagaagagagaaaaaggaggttgtcattgaagttgttagcaaatagttgttcaaatatcattgctc 29253954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 29294055 - 29294124
Alignment:
Q  42 tttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 113  Q
    |||| ||||||||||||||||||||  ||  |||||| ||| ||||| ||| || |||||||||||||||||    
T  29294055 ttttgaccaatgaaaagagagaaaagaaa--ttgtcacataagttgttccacatagttgttcaaatatcatt 29294124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 39010915 - 39010987
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaata 108  Q
    |||||||||| ||||||||||||||||||||   | ||||||| | | |||||  || |||||||||||||||    
T  39010915 cattgtttttgaccaatgaaaagagagaaaaaataagttgtcacaaaagttgtctcatatggttgttcaaata 39010987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 40610330 - 40610405
Alignment:
Q  36 cattgttttttaccaatgaaaagagaga-aaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||||||||| ||| ||| ||||||| | | |||||  ||||||| |||||||||||||    
T  40610330 cattgtttttgaccaatgaaaagagagagaaaagaa-gttgtcacaaaagttgtctcaaatggatgttcaaatatca 40610405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 47015277 - 47015197
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||||||||||||||||||| |||  ||  |||||| ||| |||||  ||  |||||||||||||| || |||||    
T  47015277 attgttttttaccaatgaaaagagaggaaaaaaaaattgtcatataagttgtctcatttggttgttcaaataacactgctc 47015197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 34942 - 35017
Alignment:
Q  42 tttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34942 ttttgaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 35017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 1796584 - 1796666
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctca 118  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1796584 cattgtttttgaccaatgaaaagagagaaaaggaaggttgtcaaataggttgtaacaaatggttgttcaaatatcattgctca 1796666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 5782890 - 5782974
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaaa 121  Q
    ||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5782890 attgtttttgatcaatgaaaagagagaaaatgaaagttgtcaaataggttgtaccaaatggttgttcaaatatcattggtcaaaa 5782974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 36740413 - 36740494
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  36740413 cattgtttttgatcaatgaaaagagagaaaatgaaggttgtcaaatagattgtatcaaatggttgttcaaatatcattgctc 36740494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 6005045 - 6005126
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||    
T  6005045 cattgtttttgaccaatgaaaagagagaaaaggaaagttgtcaaataagttgtaccaaatggttgttcaaacatcattgctc 6005126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 12045623 - 12045542
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||||| |||||| || | ||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  12045623 cattgtttttgaccaatgagaagagacaagaagaaggttgtcaaaaaggttataccaaatggttgttcaaatatcattgctc 12045542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 32725751 - 32725670
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctca 118  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||| || ||| |||| |||||| |||||||||||||||    
T  32725751 attgtttttgaccaatgaaaagagagaaaaggaaggttgtcaaatagattatactaaatagttgtttaaatatcattgctca 32725670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 42443207 - 42443288
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||||| ||| ||||| | ||||||||||||| |  ||||||||||| |||||||||||||||||||||    
T  42443207 cattgtttttgaccaatgagaagggagaagaagaaggttgtcaaaaaatttgtaccaaatagttgttcaaatatcattgctc 42443288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 44380583 - 44380503
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    ||||||||| |||||| |||| ||||||||  |||||||||||| ||||||||| |||| |||||| |||||||| |||||    
T  44380583 attgtttttgaccaatcaaaaaagagaaaagaaaggttgtcaaaaaggttgtactaaatagttgtttaaatatcagtgctc 44380503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 69559 - 69515
Alignment:
Q  73 ttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||    
T  69559 ttgtcaaataggttgtatcaaatggttgttcaaatagcattgctc 69515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 21273679 - 21273605
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    ||||||||| ||||||||||||||||||||  || ||||||| | | ||||||  |||| |||||||||||||||    
T  21273679 attgtttttaaccaatgaaaagagagaaaagaaaagttgtcacaaaagttgtatgaaatagttgttcaaatatca 21273605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 38174219 - 38174137
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| ||||||||  ||||||| || | ||||||||| | | ||||| | |||||||||||||||||||||||||||    
T  38174219 cattgtttttgaccaatgaggagagagagaaaggaggttgtcatagaagttgttagcaaatggttgttcaaatatcattgctc 38174137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 7678833 - 7678910
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 113  Q
    |||||||||| ||||||||||||||||||||   | ||||| | | | |||||| ||||| |||||||||||||||||    
T  7678833 cattgtttttaaccaatgaaaagagagaaaaaagaagttgttacaaaagttgtatcaaatagttgttcaaatatcatt 7678910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 20284813 - 20284886
Alignment:
Q  41 ttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcatt 113  Q
    ||||||| |||| | ||||||||||| ||||||||||| | | ||||| | |||||||||||||||||||||||    
T  20284813 ttttttatcaataagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatcatt 20284886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 21071442 - 21071515
Alignment:
Q  41 ttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcatt 113  Q
    ||||||| |||| | ||||||||||| ||||||||||| | | ||||| | |||||||||||||||||||||||    
T  21071442 ttttttatcaataagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatcatt 21071515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 37392093 - 37392013
Alignment:
Q  41 ttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctcaaa 120  Q
    ||||| |||||| ||||||||| |||  ||| |||||||| |  |||| | ||||||||||||||||||||||||||||||    
T  37392093 tttttaaccaataaaaagagaggaaaaaaagtttgtcaaaaaaattgttaacaaatggttgttcaaatatcattgctcaaa 37392013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 154392 - 154466
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtca-aataggttgtaccaaatggttgttcaaatatca 111  Q
    ||||||||| |||||| ||||||||||||||||| ||||||| |||| |||||   || |||||||||||||||||    
T  154392 attgtttttgaccaataaaaagagagaaaatgaaagttgtcacaata-gttgtcttaattggttgttcaaatatca 154466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 23258133 - 23258208
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||||||||||||   | ||||||| | |  ||||  |||||||||||||||||||||    
T  23258133 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaaattgtttcaaatggttgttcaaatatca 23258208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 37524398 - 37524323
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||||||||||||   ||||||||| | ||||| |  ||||| | |||||||||||||    
T  37524398 cattgtttttgaccaatgaaaagagagaaaaaagaggttgtcacaaaggttatttcaaatagatgttcaaatatca 37524323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 40413333 - 40413258
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| || |||||||||||||||||   | ||| ||| | | |||||| |||||||||||||||||||||    
T  40413333 cattgtttttgactaatgaaaagagagaaaaaagaagttatcataaaagttgtatcaaatggttgttcaaatatca 40413258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 9895107 - 9895185
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcatt 113  Q
    |||| ||||| |||||||||||||||||||| | ||||| |||   | |||| || |||||||||||||||||||||||    
T  9895107 cattatttttaaccaatgaaaagagagaaaagggaggttatcatgaaagttgttagcaaatggttgttcaaatatcatt 9895185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 14548795 - 14548713
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctc 117  Q
    ||||||||||||||||||| |||||||||||   |||||||||   | |||| || ||||| |||||| ||||||||||||||    
T  14548795 cattgttttttaccaatgagaagagagaaaaatgaggttgtcattgaagttgttagcaaatagttgttaaaatatcattgctc 14548713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 20995027 - 20994945
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctca 118  Q
    ||||||||| |||||| | ||||||||||| | ||||||||| | | ||||| |||| | |||||||||||||||||| ||||    
T  20995027 attgtttttgaccaataagaagagagaaaaggtaggttgtcacaaaagttgtcaccagaaggttgttcaaatatcattactca 20994945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 66
Target Start/End: Complemental strand, 28473515 - 28473485
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaa 66  Q
    |||||||||||||||||||||||||||||||    
T  28473515 cattgttttttaccaatgaaaagagagaaaa 28473485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 9314566 - 9314595
Alignment:
Q  89 accaaatggttgttcaaatatcattgctca 118  Q
    ||||||||||||||||||||||||||||||    
T  9314566 accaaatggttgttcaaatatcattgctca 9314595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 42651022 - 42651099
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtacc-aaatggttgttcaaatatcatt 113  Q
    ||||||||| |||||||| ||||||||| |  |||||||||  | | |||||||| |||| |||||||||||||||||    
T  42651022 attgtttttaaccaatgagaagagagaacaacaaggttgtctcaaaagttgtaccaaaatagttgttcaaatatcatt 42651099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 43605638 - 43605561
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcatt 113  Q
    ||||||||| |||||| | ||||||||||| | ||||||||| | | ||||| || ||| ||||||||||||||||||    
T  43605638 attgtttttgaccaataagaagagagaaaaggtaggttgtcacaaaagttgtcactaaaaggttgttcaaatatcatt 43605561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 6849229 - 6849149
Alignment:
Q  38 ttgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctc 117  Q
    |||||||| |||||| |||| |||||||| ||| ||||||| | | ||||| |  |||||| |||||||||||||||||||    
T  6849229 ttgtttttgaccaataaaaaaagagaaaaagaaagttgtcataaaagttgttagaaaatggctgttcaaatatcattgctc 6849149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 24503019 - 24503090
Alignment:
Q  37 attgttttttaccaatgaaaagagag-aaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaata 108  Q
    ||||||||| |||||||||||||||| |||||||| ||||||| | | |||||  ||||||||| ||||||||    
T  24503019 attgtttttgaccaatgaaaagagagaaaaatgaa-gttgtcataaaagttgtctcaaatggttattcaaata 24503090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 34996319 - 34996255
Alignment:
Q  47 accaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||||||||| ||||||| |||||||   | |||||||||||| ||||| || ||||||    
T  34996319 accaatgaaaagagagcaaatgaaagttgtcatcaaagttgtaccaaatagttgtacatatatca 34996255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 18157155 - 18157073
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctca 118  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  18157155 cattgtttttgaccaatgaaaagagagaaaaggaaggttgtcaaataggttgtaccaaatagttgttcaaatatcattgctca 18157073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 2469793 - 2469874
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2469793 cattattttttaccaatgaaaatagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 2469874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 25940636 - 25940556
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  25940636 attgtttttgaccaatgaaaagagagaaaatgaaggttgtcaaatagattgtaccaaatagttgttcaaatatcattgctc 25940556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 9031308 - 9031389
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||| ||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9031308 cattatttttgaccaataaaaagagagaaaatgaaggttgtcaaatagattgtaccaaatggttgttcaaatatcattgctc 9031389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 43444729 - 43444798
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaa 105  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43444729 cattgttttttaccaatgaaaagggagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaa 43444798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 36 - 115
Target Start/End: Original strand, 43107713 - 43107792
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgc 115  Q
    |||||||||| ||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43107713 cattgtttttgaccaatgaaaagaaagaaaaggaaggttgttaaataggttgtaccaaatggttgttcaaatatcattgc 43107792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 30941278 - 30941359
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  30941278 cattgtttttaaccaatgaaaaaagagaaaaggaaggttgtcaaataggttgtactaaatggttgttcaaatatgattgctc 30941359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 35098557 - 35098476
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    ||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||||| |||||||||||    
T  35098557 cattgttttttaccaatgagaagagagaaaatgaagattgtcaaaaaggttgtaccaaatagttgttcaattatcattgctc 35098476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 35072210 - 35072134
Alignment:
Q  41 ttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||||||| |||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||    
T  35072210 ttttttaccaatgagaagagagaaaatgaagattgtcaaaaaggttgtaccaaatagttgttcaaatatcattgctc 35072134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 27688738 - 27688819
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||  |||| |||||||||||||||    
T  27688738 cattgtttttgaccaatgaaaagagagaaaaggaaggttgtcaaatagattgtaccaaataattgtacaaatatcattgctc 27688819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 6655587 - 6655506
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| ||||||||||||||| |||| |||| |||||||| || |||||||||||||||||| ||||||||||||||    
T  6655587 cattgtttttaaccaatgaaaagagataaaaagaagattgtcaaaaagattgtaccaaatggttgtttaaatatcattgctc 6655506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 43079584 - 43079518
Alignment:
Q  51 atgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    ||||||||||||||||  |||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  43079584 atgaaaagagagaaaagaaaggttgtcaaataagttttaccaaatggttgttcaaatatcattgctc 43079518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 12141986 - 12142060
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    ||||||||| ||||||||||||| ||||||  || ||||||| | | |||||| |||||||||||||||||||||    
T  12141986 attgtttttgaccaatgaaaagaaagaaaaaaaaagttgtcacaaaagttgtatcaaatggttgttcaaatatca 12142060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 29034186 - 29034240
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtac 90  Q
    |||||||||| |||||||||||||||||||| |||| |||||||| |||||||||    
T  29034186 cattgtttttgaccaatgaaaagagagaaaaagaagattgtcaaaaaggttgtac 29034240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 37392144 - 37392226
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| ||||||||||||||||||||   |||||||||   | |||| || |||||||||||||||||||||||||||    
T  37392144 cattgtttttaaccaatgaaaagagagaaaaatgaggttgtcatgaaagttgttagcaaatggttgttcaaatatcattgctc 37392226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 21588897 - 21588816
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgct 116  Q
    |||||||||| |||||||| ||||||||||| | ||||||||| | | |||| || || |||||||||||||||||||||||    
T  21588897 cattgtttttgaccaatgagaagagagaaaaaggaggttgtcatagaagttgttagcacatggttgttcaaatatcattgct 21588816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 40693497 - 40693416
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctc 117  Q
    ||||||||| |||||||| ||||||||||| | ||||||||| | | |||| || || ||||||||||||||||||||||||    
T  40693497 attgtttttgaccaatgagaagagagaaaaaggaggttgtcatagaagttgttagcacatggttgttcaaatatcattgctc 40693416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 5978680 - 5978755
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| |||||||||||||||||||||  | ||||||| |   |||||| || ||||||||||||||||||    
T  5978680 cattgtttttgaccaatgaaaagagagaaaatagaagttgtcacaagagttgtatcatatggttgttcaaatatca 5978755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 8792567 - 8792493
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 113  Q
    |||||||||| || |||||||||||||||||   | ||||||| | | |||||| |||||||||||||||||||||||    
T  8792567 cattgtttttgactaatgaaaagagagaaaa---aagttgtcacaaaagttgtatcaaatggttgttcaaatatcatt 8792493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 4678164 - 4678246
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| ||||||||||| |||||||| | |||||||||   | |||| || |||||||||||| ||||||||||||||    
T  4678164 cattgtttttgaccaatgaaaatagagaaaaaggaggttgtcatcaaagttgttagcaaatggttgtttaaatatcattgctc 4678246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 28110056 - 28110137
Alignment:
Q  36 cattgttttttaccaatgaaaagagaga-aaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgct 116  Q
    |||||||||| ||||||||||||||||| |||||| ||| |||| | | ||||| | ||||||||||||||||||||||||||    
T  28110056 cattgtttttgaccaatgaaaagagagagaaatga-ggtcgtcataaaagttgttagcaaatggttgttcaaatatcattgct 28110137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 114
Target Start/End: Original strand, 40077356 - 40077435
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattg 114  Q
    |||||||||| |||||| | |||| |||||| | ||||||||| | | ||||| | ||||||||||||||||||||||||    
T  40077356 cattgtttttgaccaataagaagaaagaaaaaggaggttgtcataaaagttgttaacaaatggttgttcaaatatcattg 40077435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 46651773 - 46651848
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| |||||||||||||||||||||  | ||||||| |    ||||| || ||||||||||||||||||    
T  46651773 cattgtttttgaccaatgaaaagagagaaaatagaagttgtcacaagaattgtatcatatggttgttcaaatatca 46651848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 117
Target Start/End: Complemental strand, 8061668 - 8061635
Alignment:
Q  84 gttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||||||||||||||||||| |||||||    
T  8061668 gttgtaccaaatggttgttcaaatattattgctc 8061635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 10591254 - 10591338
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaaa 121  Q
    ||||||||||||||||||||| | |||||||   | ||||||| | | |||||  ||||||||||||||||||||| | |||||||    
T  10591254 cattgttttttaccaatgaaa-gtgagaaaaaagaagttgtcacaaaagttgtctcaaatggttgttcaaatatcactactcaaaa 10591338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 120
Target Start/End: Original strand, 33056773 - 33056802
Alignment:
Q  91 caaatggttgttcaaatatcattgctcaaa 120  Q
    ||||||||||||||||||||||||||||||    
T  33056773 caaatggttgttcaaatatcattgctcaaa 33056802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 38023396 - 38023315
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||| |||| ||| ||||  ||| ||||||||||  ||||| ||||| | |||||||||||||| ||||    
T  38023396 cattgtttttgaccaataaaaatagataaaagaaagattgtcaaataaattgtatcaaatagctgttcaaatatcatagctc 38023315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 34348997 - 34348922
Alignment:
Q  36 cattgttttttaccaatgaaaagagaga-aaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||||||||||||||||||||| ||| ||| ||||| ||| | ||||||  |||| | |||||||||||||    
T  34348997 cattgttttttaccaatgaaaagagagagaaaagaa-gttgttaaaaaagttgtatgaaatagatgttcaaatatca 34348922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 125
Target Start/End: Complemental strand, 8173282 - 8173193
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaaaaatt 125  Q
    |||||||| | ||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8173282 cattgtttctgaccaatgaaaagagagaaaagaaaggttgtcaaataggttataccaaatggttgttcaaatatcattgctcaaaaaatt 8173193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 21443789 - 21443870
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||    
T  21443789 cattgtttttgaccaatgaaaagagataaaatgaaggttgtccaatagattgtaccaaatagttgttcaaatatcattgctc 21443870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 32729991 - 32730071
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    ||||||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  32729991 attgtttttgatcaatgaaaagagagaaaaagaatgttgtcaaataggttgtaccaaatggttgttcatatatcattgctc 32730071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 16533230 - 16533148
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaa-tggttgttcaaatatcattgctc 117  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||| || ||||||||||||||||||||    
T  16533230 cattgttttttaccaatgaaaagagagaaaaggaaagttgtcaaataggttataccaaattgattgttcaaatatcattgctc 16533148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 12187048 - 12187132
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaaa 121  Q
    ||||||||||| |||| |||| ||||||||||||  || ||||| |  ||||| ||||||||||||||||||| |||||||||||    
T  12187048 attgttttttatcaataaaaatagagaaaatgaaaattatcaaaaatattgtatcaaatggttgttcaaatattattgctcaaaa 12187132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 25567426 - 25567381
Alignment:
Q  73 ttgtcaaataggttgtaccaaatggttgttcaaatatcattgctca 118  Q
    |||||| | |||||||||||||||||||||||||||||||||||||    
T  25567426 ttgtcataaaggttgtaccaaatggttgttcaaatatcattgctca 25567381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 32644713 - 32644796
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctca 118  Q
    ||||||||||||||||||| |||||||||||   ||||||||| | | |||| || || |||||||||||||||||||| ||||    
T  32644713 cattgttttttaccaatgagaagagagaaaaatgaggttgtcatagaagttgttagcacatggttgttcaaatatcatttctca 32644796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 118
Target Start/End: Complemental strand, 11742953 - 11742871
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctca 118  Q
    ||||||||| |||||||| ||||||||||| | ||||||||| | | |||| || || |||||| ||||||||||||||||||    
T  11742953 attgtttttgaccaatgagaagagagaaaaaggaggttgtcatagaagttgttagcacatggttcttcaaatatcattgctca 11742871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 12044431 - 12044513
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||||| || |||||||| | ||||||||| | | ||||| | || ||||||||||||||||||||||||    
T  12044431 cattgtttttgaccaatgagaaaagagaaaaaggaggttgtcataaaagttgttagcacatggttgttcaaatatcattgctc 12044513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 32253881 - 32253957
Alignment:
Q  36 cattgttttttaccaatgaaaagagaga-aaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||||||||| |||  ||  |||||| | | |||||||||||| |||||||||||||||    
T  32253881 cattgtttttaaccaatgaaaagagagagaaaaaaaaattgtcacaaaagttgtaccaaatagttgttcaaatatca 32253957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 1897787 - 1897862
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||||||||||||   ||||||||| | | |||||  ||||| | |||||||||||||    
T  1897787 cattgtttttgaccaatgaaaagagagaaaaaagaggttgtcacaaaagttgtttcaaatagatgttcaaatatca 1897862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 608631 - 608549
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaa-tggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||||| ||||||||| |  |||||||||  |   ||||||||||| | |||||||||||||||||||||    
T  608631 cattgtttttgaccaatgagaagagagaacaacaaggttgtcccaacagttgtaccaaaatagttgttcaaatatcattgctc 608549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 20712167 - 20712249
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| | ||| || ||||||||||| | ||||||||| | | ||||| | |||||||||||||||||||||| ||||    
T  20712167 cattgtttttgatcaacgagaagagagaaaaaggaggttgtcatagaagttgttaacaaatggttgttcaaatatcatagctc 20712249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 25561910 - 25561831
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||| ||||| |||||| | |||||||||||  ||  |||||| | |||| ||||||||| |||||||||||||||||||||    
T  25561910 cattatttttgaccaataagaagagagaaaa--aaatttgtcataaaggtggtaccaaatagttgttcaaatatcattgctc 25561831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 26101424 - 26101345
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||| ||||| |||||| | |||||||||||  ||  |||||| | |||| ||||||||| |||||||||||||||||||||    
T  26101424 cattatttttgaccaataagaagagagaaaa--aaatttgtcataaaggtggtaccaaatagttgttcaaatatcattgctc 26101345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 16337040 - 16336963
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 113  Q
    |||||||||| ||||||||||||||||| |||  | ||||||| |   |||||  ||||||| |||||||||||||||    
T  16337040 cattgtttttgaccaatgaaaagagagagaatagaagttgtcacaagagttgtctcaaatggatgttcaaatatcatt 16336963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 23653862 - 23653781
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctc 117  Q
    ||||||||| ||| |||| |||||||||||   ||||||||| | | ||||| | ||||||||||||||||||| |||||||    
T  23653862 attgtttttgacctatgagaagagagaaaaatgaggttgtcataaaagttgttagcaaatggttgttcaaatattattgctc 23653781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 40951291 - 40951372
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  40951291 cattgttttttaccaatgaaaagagagaaaaggaaggttgtcaaataggttgtacctaatggttgttcatatatcattgctc 40951372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 5167712 - 5167633
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgc 115  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  5167712 cattgtttttgaccaatgaaaagagagaaaatgaaggttgtcaagtaggttataccaaatggttgttcaaatatcattgc 5167633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 19668157 - 19668078
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgc 115  Q
    |||||||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  19668157 cattgtttttgaccaatgaaaagagagaaaaggaaggttatcaaataggttgtatcaaatggttgttcaaatatcattgc 19668078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 4842489 - 4842407
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctca 118  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||    
T  4842489 cattgtttttgaccaatgaaaaaagagaaaatgaaggttgtcaaataggttgtatcaaatggtagttcatatatcattgctca 4842407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 30856908 - 30856992
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaa 120  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||  |||||||||||||||||||| ||||||||| |||||    
T  30856908 cattgtttttgaccaatgaaaagagagaaaaagaaggttgtcaaataaattgtaccaaatggttgttcatatatcattgttcaaa 30856992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 13553244 - 13553316
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaata 108  Q
    |||| ||||| ||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  13553244 cattatttttgaccaatgaaaagagagaaaagaaagattgtcaaataggttgtaccaaatggttgttcaaata 13553316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 15283217 - 15283138
Alignment:
Q  38 ttgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||| |||||| |||| |||||||| |||||||||||||||  |||||| |||||||| |||||||||||||||||    
T  15283217 ttgtttttgaccaataaaaaaagagaaaaggaaggttgtcaaataaattgtacgaaatggttattcaaatatcattgctc 15283138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 10288255 - 10288327
Alignment:
Q  38 ttgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatc 110  Q
    |||||||| |||||||||||||||||||| |||| ||||||||||| |||||||||||  || ||||||||||    
T  10288255 ttgtttttgaccaatgaaaagagagaaaaggaagattgtcaaatagattgtaccaaataattattcaaatatc 10288327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 21805755 - 21805675
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||| |||| |||||||  ||||||||| | ||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  21805755 attgcttttgaccaatgggaagagagaataagaaggttgtcaaaaagattgtaccaaatggttgttaaaatatcattgctc 21805675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 35792426 - 35792354
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaata 108  Q
    |||||||||| || |||||||||||||| || ||||||||| ||||||||||||  |||||||||||||||||    
T  35792426 cattgtttttgactaatgaaaagagagagaaagaaggttgttaaataggttgtattaaatggttgttcaaata 35792354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 36763488 - 36763408
Alignment:
Q  38 ttgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctc 117  Q
    |||||||| |||||||||||||||||||| ||||||||||| | |  ||| || |||||||||||||||||||||||||||    
T  36763488 ttgtttttgaccaatgaaaagagagaaaaagaaggttgtcataaaaattgttaacaaatggttgttcaaatatcattgctc 36763408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 37631337 - 37631251
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctcaaaa 121  Q
    |||||||||| |||||||| |||||||||||   ||||||||| | | ||||| | |||||||||||||||||||||||||||||||    
T  37631337 cattgtttttgaccaatgagaagagagaaaaaagaggttgtcataaaagttgttagcaaatggttgttcaaatatcattgctcaaaa 37631251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 13553310 - 13553347
Alignment:
Q  76 tcaaataggttgtaccaaatggttgttcaaatatcatt 113  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13553310 tcaaataggttgtaccaaatggttgttcaaatatcatt 13553347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 19637365 - 19637409
Alignment:
Q  73 ttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||| | ||||||||||||||||||||||||||||||||||||    
T  19637365 ttgtcataaaggttgtaccaaatggttgttcaaatatcattgctc 19637409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 19835958 - 19836002
Alignment:
Q  73 ttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||| | ||||||||||||||||||||||||||||||||||||    
T  19835958 ttgtcataaaggttgtaccaaatggttgttcaaatatcattgctc 19836002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 11164346 - 11164271
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||||||||||||   | ||||||| | | |||||| ||||| |||||||||||||||    
T  11164346 cattgtttttaaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatca 11164271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 13711162 - 13711237
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||||||||||||   | ||||||| | | ||||||| |||| |||||||||||||||    
T  13711162 cattgtttttaaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtacaaaatagttgttcaaatatca 13711237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 42665781 - 42665707
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    ||||||||  ||||||||||| |||| ||||||| |||||||   | |||||||||||||||||| |||||||||    
T  42665781 attgttttggaccaatgaaaaaagagcaaatgaaagttgtcatcaaagttgtaccaaatggttgtacaaatatca 42665707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 123
Target Start/End: Original strand, 694370 - 694458
Alignment:
Q  36 cattgttttttaccaatgaaaagagaga-aaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctcaaaaaa 123  Q
    |||||||||| ||||||||||| ||||| |||||| |||||||| | | ||| | | |||||| ||||||||||||||||||||||||||    
T  694370 cattgtttttgaccaatgaaaaaagagataaatga-ggttgtcataaaagttattagcaaatgattgttcaaatatcattgctcaaaaaa 694458  T

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Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 32128232 - 32128312
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctca 118  Q
    ||||||||| |||||| |||||||||||||  ||  || ||| | || ||||||||||| ||||||||||||||||||||||    
T  32128232 attgtttttgaccaataaaaagagagaaaaaaaaa-ttatcataaagattgtaccaaatagttgttcaaatatcattgctca 32128312  T

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Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 43791760 - 43791683
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcatt 113  Q
    ||||||||| |||||| ||||||||||||| | ||||||||| | | ||||| || ||| ||||||||||||||||||    
T  43791760 attgtttttgaccaataaaaagagagaaaaggtaggttgtcacaaaagttgtcactaaaaggttgttcaaatatcatt 43791683  T

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Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 305939 - 305847
Alignment:
Q  36 cattgttttttaccaatgaaaagagaga-aaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaaaaattta 127  Q
    |||||||||  |||||| | |||||||| |||  || ||||||| | || |||||||||||| ||||||||||||||||||||| | ||||||    
T  305939 cattgttttcgaccaataagaagagagagaaaaaaaagttgtcataaagattgtaccaaatgattgttcaaatatcattgctcatacaattta 305847  T

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Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 45515569 - 45515494
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtca-aataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| |||||||||||||||||||| ||| |||||||  | | ||||||  ||||||||||||||||||||    
T  45515569 cattgtttttaaccaatgaaaagagagaaaaagaa-gttgtcaccaaaagttgtatgaaatggttgttcaaatatca 45515494  T

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Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 1574554 - 1574636
Alignment:
Q  36 cattgttttttaccaatgaaaagagag-aaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatatcattgctc 117  Q
    |||| ||||| |||||||||||||||| ||||||| ||||||||   | ||||| | |||||||||||||||||||||||||||    
T  1574554 cattttttttgaccaatgaaaagagagtaaaatga-ggttgtcattaaagttgttagcaaatggttgttcaaatatcattgctc 1574636  T

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Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 3091842 - 3091917
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||||||||||||   | ||||||| | | |||||| |||||  ||||||||||||||    
T  3091842 cattgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaataattgttcaaatatca 3091917  T

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Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 8352939 - 8353018
Alignment:
Q  39 tgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttg-taccaaatggttgttcaaatatcattgctc 117  Q
    ||||||| | |||||| ||||||||||| |||||||||||   | |||| || |||||||||||| ||||||||||||||    
T  8352939 tgtttttgatcaatgagaagagagaaaaagaaggttgtcattgaagttgttagcaaatggttgttaaaatatcattgctc 8353018  T

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Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 42251890 - 42251815
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    ||||| |||| ||||||||||||||||||||   | ||||||| ||| ||||| ||||||| ||||| ||||||||    
T  42251890 cattgattttgaccaatgaaaagagagaaaaaagaagttgtcacataagttgttccaaatgattgtttaaatatca 42251815  T

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Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 3959997 - 3960078
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaa-tgaaggttgtcaaataggttgtac-caaatggttgttcaaatatcattgct 116  Q
    |||||||||| | |||||||||||||||||| ||||  |||||| | | ||||| | ||||||||||||||||||||||||||    
T  3959997 cattgtttttgatcaatgaaaagagagaaaaatgaaa-ttgtcataaaagttgttcgcaaatggttgttcaaatatcattgct 3960078  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 44059692 - 44059619
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgt-accaaatggttgttcaaatat 109  Q
    ||||||||| |||||| ||||||||||||| | ||||||||| | | ||| | | |||||||||||||||||||    
T  44059692 attgtttttgaccaattaaaagagagaaaaagtaggttgtcacaaaagttatcatcaaatggttgttcaaatat 44059619  T

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Target: scaffold0002 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 440819 - 440900
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  440819 cattgttttttaccaatgaaaagagagaaaagaaagattgtcaaatagattgtaccaaatggttgttcaaatatcattgctc 440900  T

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Target: scaffold0184 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 16564 - 16482
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctca 118  Q
    |||||||||| |||||||||| ||||||||| |||| |||||||| | ||||||||||||||||||| |||||||||||||||    
T  16564 cattgtttttgaccaatgaaacgagagaaaaagaagattgtcaaaaaagttgtaccaaatggttgttgaaatatcattgctca 16482  T

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Target: scaffold0078 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 36 - 118
Target Start/End: Original strand, 56280 - 56362
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctca 118  Q
    |||||||||| |||||||||| ||||||||| |||| |||||||| | ||||||||||||||||||| |||||||||||||||    
T  56280 cattgtttttgaccaatgaaacgagagaaaaagaagattgtcaaaaaagttgtaccaaatggttgttgaaatatcattgctca 56362  T

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Target: scaffold0115 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 15158 - 15084
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||| |||||||| |||| |||||| | | |||||||||||| |||||||||||||||    
T  15158 cattgtttttaaccaatgaaaaaagagaaaaagaag-ttgtcacaaaagttgtaccaaatagttgttcaaatatca 15084  T

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Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 18105 - 18179
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatca 111  Q
    |||||||||| ||||||||||||||||||||  || ||||||| | | |||||| ||||| |||||||||||||||    
T  18105 cattgtttttaaccaatgaaaagagagaaaa-aaaagttgtcataaaagttgtatcaaatagttgttcaaatatca 18179  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 337219 - 337300
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||| |||| |||||||| |||  |||| ||| |  |||||||||||  ||||||||||||||||||||    
T  337219 cattgtttttgaccaataaaaaaagagaaaaagaaaattgtaaaaaatattgtaccaaataattgttcaaatatcattgctc 337300  T

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Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 119935 - 119964
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  119935 attgttttttaccaatgaaaagagagaaaa 119964  T

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Target: scaffold0194 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 29780 - 29738
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtca 78  Q
    |||||||||  |||||||||||||||||||||||| |||||||    
T  29780 cattgttttggaccaatgaaaagagagaaaatgaaagttgtca 29738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 17300 - 17218
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtacc-aaatggttgttcaaatatcattgctc 117  Q
    |||||||||| |||||| |||| |||||||| ||||||| ||| ||| |||||  | |||| ||||||||||||||| |||||    
T  17300 cattgtttttgaccaataaaaaaagagaaaaagaaggttatcatataagttgtcgctaaatagttgttcaaatatcactgctc 17218  T

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Target: scaffold0318 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 18248 - 18179
Alignment:
Q  49 caatgaaaagagagaaaatgaaggttgtcaaataggttgtac-caaatggttgttcaaatatcattgctc 117  Q
    |||||| |||||||| || | ||||||||| | | ||||||  |||||||||||||||||||||||||||    
T  18248 caatgagaagagagagaagggaggttgtcataaaagttgtaagcaaatggttgttcaaatatcattgctc 18179  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 60569 - 60610
Alignment:
Q  37 attgttttttaccaatgaaaagagagaaaatgaaggttgtca 78  Q
    ||||||||  |||||||||||||||||||||||| |||||||    
T  60569 attgttttggaccaatgaaaagagagaaaatgaaagttgtca 60610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 38980 - 39064
Alignment:
Q  36 cattgttttttaccaatgaaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcaaa 120  Q
    |||| ||||||||||||||||||||||||||   || |||||| | | |||||  ||||| | ||||||||||||| | ||||||    
T  38980 cattattttttaccaatgaaaagagagaaaaaagagattgtcacaaaagttgtttcaaatagatgttcaaatatcactactcaaa 39064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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