View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17844_high_66 (Length: 212)

Name: NF17844_high_66
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17844_high_66
NF17844_high_66
[»] chr6 (4 HSPs)
chr6 (57-123)||(4177451-4177517)
chr6 (50-123)||(4078533-4078606)
chr6 (151-195)||(4177539-4177583)
chr6 (151-188)||(4078474-4078511)


Alignment Details
Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 4177451 - 4177517
Alignment:
Q  57 tattactaactagttttatttgaacgtatttgaaagtaagtgataaatttatttgcactaaaggatg 123  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4177451 tattactaactagttttatttgaaagtatttgaaagtaagtgataaatttatttgcactaaaggatg 4177517  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 4078606 - 4078533
Alignment:
Q  50 tttgttgtattactaactagttttatttgaacgtatttgaaagtaagtgataaatttatttgcactaaaggatg 123  Q
    |||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4078606 tttgttctattgctaactagttttatttgaacgtagttgaaagtaagtgataaatttatttgcactaaaggatg 4078533  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 4177539 - 4177583
Alignment:
Q  151 ataatgttacataaaagatagtatccctttatatatatagtataa 195  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  4177539 ataatgttacataaaggatagtatccctttatatatatagtataa 4177583  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 4078511 - 4078474
Alignment:
Q  151 ataatgttacataaaagatagtatccctttatatatat 188  Q
    |||||||||||||||| |||||||||||||||||||||    
T  4078511 ataatgttacataaaacatagtatccctttatatatat 4078474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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