View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17844_low_1 (Length: 1043)
Name: NF17844_low_1
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 965; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 965; E-Value: 0
Query Start/End: Original strand, 19 - 1038
Target Start/End: Complemental strand, 29937283 - 29936263
Alignment:
| Q |
19 |
ctctttacttgtagcattaagaagaatatttcctatggcaaggatggggcaactgttgaagaaataagagctgcagcggaacttgctaatgctgccaaat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29937283 |
ctctttacttgtagcattaagaagaatatttcctatggcaaggatggggcaactgttgaggaaataagagctgcagcggaacttgctaatgctgccaaat |
29937184 |
T |
|
| Q |
119 |
ttatagacaaactccctcaggtgaattctcaaatctt-catttcaaaagttacaataattttgtaaaattatagattatgatctcagggactagacacga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29937183 |
ttatagacaaactccctcaggtgaattctcaaatctttcatttcaaaagaaacgataattttgtaaaattatagattatgatctcagggactagacacga |
29937084 |
T |
|
| Q |
218 |
tggttggtgagcatggaatacaactctctggaggacaaaagcaaagagttgcaattgcaagagcaattttgaaagacccaagaatcctacttcttgatga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
29937083 |
tggttggtgagcatggaatacaactctctggaggacaaaagcaaagagttgcaattgcaagagcaattttgaaagacccaagaatcttacttcttgatga |
29936984 |
T |
|
| Q |
318 |
agctacaagtgcccttgatgcagaatctgagagaattgtacaagaggcattggaaagaataatgataaaccggacgacaatcgtcgtagctcaccgctta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29936983 |
agctacaagtgcccttgatgcagaatctgagagaattgtacaagaggcattggaaagaataatgataaaccggacgacaatcgtcgtagctcaccgctta |
29936884 |
T |
|
| Q |
418 |
agtacaatcagaaatgttgataccattgctgtcattcgtcaaggaaaaatagttgaacgaggtagaaacattattttgtgacaataatcctgtttctcca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29936883 |
agtacaatcagaaatgttgataccattgctgtcattcgtcaaggaaaaatagttgaacgaggtagaaacattattttgtgacaataatcctgtttctcca |
29936784 |
T |
|
| Q |
518 |
tgactcaaaattaatagaaatcatgaagcccaaatgtttttgtacataatagcattcttatatttttcaattggttaggttcacatgtcgagctcaccaa |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29936783 |
tgactcaaaattaatagaaatcatgaagcccaaatgtttttgtacataatagcattcttatatttttcaattggttaggttcacatgtcgagctcaccaa |
29936684 |
T |
|
| Q |
618 |
ggatgctaatggtgcctatagccagcttattagactgcaagaaatgaaggggtcagaacaaaatgttgccaatgactcaaacaaatcaaacagtataatg |
717 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29936683 |
ggatgctaatggtgcctatagccagctaattagactgcaagaaatgaaggggtcagaacaaaatgttgccaatgactcaaataaatcaaacagtataatg |
29936584 |
T |
|
| Q |
718 |
ctatctgaaaaacgatcaagtgaaatatctttatcctcaagattcataaggcaagtgtcatctggaaacagtggtcgtcactctttttcagaatcatgtg |
817 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29936583 |
ctatctgaaaaacgatcaagtgaaatatctttatcctcaagattcataaggcaagtgtcatctggaaacagtggtcgtcactctttttcagcatcatgtg |
29936484 |
T |
|
| Q |
818 |
gtgcacccacaacagatggcttcttagagactgcagatggtggacctcaagcttctctttcaacagtttcttaaccaccagaaatgccactttatcgcct |
917 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
29936483 |
gtgcacccacaacagatggcttcttagagactgcagatggtggacctcaagcttctctttcaacagtttcttcaccaccagaagtgccactttatcgcct |
29936384 |
T |
|
| Q |
918 |
ggcatattttaacaagcctgagatttcagtcttattgatgggtactatagctgcagtgctgaatggagcaatactgcccacttttgggctcttgatttct |
1017 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29936383 |
ggcatattttaacaagcctgagatttcagtcttattgatgggtactatagctgcagtgctgaatggagcaataatgcccacttttgggctcttgatttct |
29936284 |
T |
|
| Q |
1018 |
aaaatgataagtattatctac |
1038 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
29936283 |
aaaatgataagtattttctac |
29936263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 182 - 1038
Target Start/End: Original strand, 51157053 - 51157907
Alignment:
| Q |
182 |
aaaattatagattatgatctcagggactagacacgatggttggtgagcatggaatacaactctctggaggacaaaagcaaagagttgcaattgcaagagc |
281 |
Q |
| |
|
||||| || |||| |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51157053 |
aaaatgatggattgtgatctcagggactagacacaatggttggtgagcatggaacacagctctctggaggtcaaaagcaaagagttgcaattgcaagagc |
51157152 |
T |
|
| Q |
282 |
aattttgaaagacccaagaatcctacttcttgatgaagctacaagtgcccttgatgcagaatctgagagaattgtacaagaggcattggaaagaataatg |
381 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
51157153 |
aattttgaaagacccgagaatcctacttcttgatgaagctacaagtgcccttgatgcagaatctgagagaattgtacaagaggcattggagagaataatg |
51157252 |
T |
|
| Q |
382 |
ataaaccggacgacaatcgtcgtagctcaccgcttaagtacaatcagaaatgttgataccattgctgtcattcgtcaaggaaaaatagttgaacgaggta |
481 |
Q |
| |
|
||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||||||||||| |||||| |
|
|
| T |
51157253 |
ataaaccggacaactatcgttgtagctcaccgcttaagtacaataagaaatgttgaaaccattgctgtcattcatcatggaaaaatagttgaaagaggta |
51157352 |
T |
|
| Q |
482 |
gaaacattattttgtgacaataatcctgtttctccatgactcaaaattaatagaaatcatgaagcccaaatgtttttgtacataatagcattcttatatt |
581 |
Q |
| |
|
| | |||||||||| |||| |||| ||||||||||| ||||||| || ||| ||||| || |||||||| | ||| || ||||||||||||||| |
|
|
| T |
51157353 |
cacagattattttgtaacaa-aatctaacttctccatgacacaaaatt-gtataaagcatgatgcacaaatgttaatatacttagtagcattcttatatt |
51157450 |
T |
|
| Q |
582 |
tttcaattggttaggttcacatgtcgagctcaccaaggatgctaatggtgcctatagccagcttattagactgcaagaaatgaaggggtcagaacaaaat |
681 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||| ||| || ||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
51157451 |
ttttaattggttaggttcacatgccgagctcacaaagtatcctaatggagcctatagccaacttattagactgcaagaaatgaagggttcagaacagaat |
51157550 |
T |
|
| Q |
682 |
gttgccaatgactcaaacaaatcaaacagtataatgctatctgaaaaacgatcaagtgaaatatctttatcctcaagattcataaggcaagtgtcatctg |
781 |
Q |
| |
|
| ||| ||||| |||||| |||||||||||| ||| |||| || || ||| ||| | | |||||| |||| ||||| ||||| |||| |||||||| |
|
|
| T |
51157551 |
gatgcaaatgataaaaacaagtcaaacagtatagtgcattctggaagacaatcgagtcagagatctttttccttaagatctataagccaagggtcatctg |
51157650 |
T |
|
| Q |
782 |
gaaacagtggtcgtcactctttttcagaatcatgtggtgcacccacaacagatggcttcttagagactgcagatggtggacctcaagcttctctttcaac |
881 |
Q |
| |
|
||||||| |||||||||||||| |||| ||||| || ||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||| || |
|
|
| T |
51157651 |
gaaacagcggtcgtcactctttctcagcatcatatgttgcacccgcaacagatggcttcttagaaactgcagacggtggacctcaagcttctccttcgac |
51157750 |
T |
|
| Q |
882 |
agtttcttaaccaccagaaatgccactttatcgcctggcatattttaacaagcctgagatttcagtcttattgatgggtactatagctgcagtgctgaat |
981 |
Q |
| |
|
|||||||| |||||| ||| |||||||||||||||||||||||| |||||||||||||| | | ||| |||| ||||| || ||||||||||||||| | |
|
|
| T |
51157751 |
agtttcttcaccaccggaagtgccactttatcgcctggcatattataacaagcctgagactgcggtcatattaatggggacaatagctgcagtgctgcaa |
51157850 |
T |
|
| Q |
982 |
ggagcaatactgcccacttttgggctcttgatttctaaaatgataagtattatctac |
1038 |
Q |
| |
|
||||||||| |||||| ||||||||| ||||||||||||||||||| |||| ||||| |
|
|
| T |
51157851 |
ggagcaataatgcccatttttgggctattgatttctaaaatgataaatattttctac |
51157907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 170 - 1030
Target Start/End: Original strand, 51145919 - 51146760
Alignment:
| Q |
170 |
caataattttgtaaaattatagattatgatctcagggactagacacgatggttggtgagcatggaatacaactctctggaggacaaaagcaaagagttgc |
269 |
Q |
| |
|
|||||||||| || ||| || ||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| |||||||| |||||||| |
|
|
| T |
51145919 |
caataattttttataatgatggattatgatctcagggactagacacaatggttggtgagcatggaacgcagctctctggaggtcaaaagcagagagttgc |
51146018 |
T |
|
| Q |
270 |
aattgcaagagcaattttgaaagacccaagaatcctacttcttgatgaagctacaagtgcccttgatgcagaatctgagagaattgtacaagaggcattg |
369 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51146019 |
aattgcaagagcaattttgaaagatccaagaatcctacttcttgatgaagctacaagtgcccttgatgcagaatctgagagaattgtacaagaggcattg |
51146118 |
T |
|
| Q |
370 |
gaaagaataatgataaaccggacgacaatcgtcgtagctcaccgcttaagtacaatcagaaatgttgataccattgctgtcattcgtcaaggaaaaatag |
469 |
Q |
| |
|
| ||||||||||||||||||||||| ||||| ||||| |||||||| || || || |||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
51146119 |
aacagaataatgataaaccggacgactatcgttgtagcacaccgcttgagcactataagaaatgttgatacaattgctgtcattcatcaaggaaaaatag |
51146218 |
T |
|
| Q |
470 |
ttgaacgaggtagaaacattattttgtgacaataatcctgtttctccatgactcaaaattaatagaaatcatgaagcccaaatgtttttgtacataatag |
569 |
Q |
| |
|
||||| |||||||| || |||||| ||||| || |||||||| ||| ||| |||||||||||||||||| | || | || | |
|
|
| T |
51146219 |
ttgaaagaggtagacacgttattt-------------------ctccacgattcaaaattcataaaaagcatgaagcccaaatgtttatatattttattg |
51146299 |
T |
|
| Q |
570 |
cattcttatatttttcaattggttaggttcacatgtcgagctcaccaaggatgctaatggtgcctatagccagcttattagactgcaagaaatgaagggg |
669 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| ||||||||||| ||| | ||||| |||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
51146300 |
cattcttatatttttcaattgataaggttcacatgctgagctcaccaatgatcccaatggagcctatagtcagcttattagactgcaagaaatgaagagg |
51146399 |
T |
|
| Q |
670 |
tcagaacaaaatgttgccaatgactcaaacaaatcaaacagtataatgctatctgaaaaacgatcaagtgaaatatctttatcctcaagattcataaggc |
769 |
Q |
| |
|
||||| ||||||| ||| |||||| |||||| ||||||||||| ||| |||| || || ||| ||| | | |||||| |||| ||||| ||||| | |
|
|
| T |
51146400 |
tcagagcaaaatgatgcaaatgacaaaaacaagccaaacagtatagtgcattctggaagacaatcgagtcagagatctttttccttaagatcaataagcc |
51146499 |
T |
|
| Q |
770 |
aagtgtcatctggaaacagtggtcgtcactctttttcagaatcatgtggtgcacccacaacagatggcttcttagagactgcagatggtggacctcaagc |
869 |
Q |
| |
|
||| |||| |||||||||| |||||||||||||| |||| ||| | || |||||||||||||||||| |||||||| |||| |||||| ||||||||||| |
|
|
| T |
51146500 |
aagggtcagctggaaacagcggtcgtcactctttctcagcatcttatgttgcacccacaacagatggattcttagaaactgaagatgggggacctcaagc |
51146599 |
T |
|
| Q |
870 |
ttctctttcaacagtttcttaaccaccagaaatgccactttatcgcctggcatattttaacaagcctgagatttcagtcttattgatgggtactatagct |
969 |
Q |
| |
|
|||| ||||| | ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| || |
|
|
| T |
51146600 |
gtctccttcaaaaaattcttcaccaccagaagtgccactttatcgcctggcatattttaacaagcctgagattccagtcttattgatggggactataact |
51146699 |
T |
|
| Q |
970 |
gcagtgctgaatggagcaatactgcccacttttgggctcttgatttctaaaatgataagta |
1030 |
Q |
| |
|
||||||||| ||||||||||| ||||| | |||||||||| |||||||||||||||||| |
|
|
| T |
51146700 |
gcagtgctgcatggagcaataatgcccgttattgggctcttagtttctaaaatgataagta |
51146760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 177 - 481
Target Start/End: Original strand, 51199862 - 51200166
Alignment:
| Q |
177 |
tttgtaaaattatagattatgatctcagggactagacacgatggttggtgagcatggaatacaactctctggaggacaaaagcaaagagttgcaattgca |
276 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||| || |||||||| ||||||||||| ||||||||||| ||| |
|
|
| T |
51199862 |
tttgtaaaattatggataatgatcttagggactagacacaatggttggtgagcatggaactcagctctctgggggacaaaagcagagagttgcaatagca |
51199961 |
T |
|
| Q |
277 |
agagcaattttgaaagacccaagaatcctacttcttgatgaagctacaagtgcccttgatgcagaatctgagagaattgtacaagaggcattggaaagaa |
376 |
Q |
| |
|
||||| ||| ||||||| |||||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
51199962 |
agagcgattctgaaagatccaagaatattacttctcgatgaagctacaagtgcgcttgatgctgaatctgagagaattgtacaagaggcattggatagag |
51200061 |
T |
|
| Q |
377 |
taatgataaaccggacgacaatcgtcgtagctcaccgcttaagtacaatcagaaatgttgataccattgctgtcattcgtcaaggaaaaatagttgaacg |
476 |
Q |
| |
|
||||| ||||||| || || | | ||||||||||| || |||||||| | |||| |||||||||||| || |||| ||||||||||||| ||||| | |
|
|
| T |
51200062 |
taatggtaaaccgaacaactgtgattgtagctcaccgtttgagtacaataaagaatgctgataccattgccgttattcatcaaggaaaaataattgaaag |
51200161 |
T |
|
| Q |
477 |
aggta |
481 |
Q |
| |
|
||||| |
|
|
| T |
51200162 |
aggta |
51200166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 569 - 1038
Target Start/End: Original strand, 51200224 - 51200701
Alignment:
| Q |
569 |
gcattcttatatttttcaattggttaggttcacatgtcgagctcaccaaggatgctaatggtgcctatagccagcttattagactgcaagaaatgaaggg |
668 |
Q |
| |
|
||||||||||||||| |||||| | ||||||||||| ||||||| | |||| || |||| |||||||| ||||||||||| ||||||||||||| ||| |
|
|
| T |
51200224 |
gcattcttatatttt-caattgatcaggttcacatgctcagctcacaagggatcctgatggagcctataggcagcttattaggctgcaagaaatgagggg |
51200322 |
T |
|
| Q |
669 |
gtcagaacaaaatgttgccaatgactcaaacaaatcaaacagtataatgctatctgaaaaacgatcaagtgaaatatctttatcctcaagattcataagg |
768 |
Q |
| |
|
||||||||| |||||| |||||||| |||||| |||||||||||| |||||||||||| |||||| ||| ||| |||| | |||||||| | |||| |
|
|
| T |
51200323 |
gtcagaacagaatgttaccaatgacaaaaacaagtcaaacagtatagtgctatctgaaagacgatcgagtcaaagatctctctcctcaaggtctttaagc |
51200422 |
T |
|
| Q |
769 |
caagtgtcatctgga------aacagtggtcgtcactctttttcagaatcatgtggtgcacccac---aacagatggcttcttagagactgcagatggtg |
859 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| || |||| |||| || || || || | ||| |||||||| ||| | ||||||||||| |
|
|
| T |
51200423 |
caagtgtcatctggaggtgggaacagcggtcgtcactcattctcagcatcacatgttgtgccaactgtaccagttggcttctcagaaattgcagatggtg |
51200522 |
T |
|
| Q |
860 |
gacctcaagcttctctttcaacagtttcttaaccaccagaaatgccactttatcgcctggcatattttaacaagcctgagatttcagtcttattgatggg |
959 |
Q |
| |
|
|||| |||| | ||| |||||| ||||||| |||||||||| | ||||||||||||||||| ||||| |||||||| |||||| | |||||| | || || |
|
|
| T |
51200523 |
gaccacaagttcctccttcaacggtttcttcaccaccagaagttccactttatcgcctggcctatttaaacaagcccgagattcctgtcttacttatagg |
51200622 |
T |
|
| Q |
960 |
tactatagctgcagtgctgaatggagcaatactgcccacttttgggctcttgatttctaaaatgataagtattatctac |
1038 |
Q |
| |
|
||||||||||||||| || |||| | |||| | || | |||||| |||||| |||| |||||||| |||||| ||||| |
|
|
| T |
51200623 |
aactatagctgcagtgttgcatggtgtaatattaccaatttttggcctcttgctttcgaaaatgattagtattttctac |
51200701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 203 - 454
Target Start/End: Original strand, 51213050 - 51213301
Alignment:
| Q |
203 |
agggactagacacgatggttggtgagcatggaatacaactctctggaggacaaaagcaaagagttgcaattgcaagagcaattttgaaagacccaagaat |
302 |
Q |
| |
|
||||||| || |||||||| |||||||||||| ||||||||||||||| |||||||||||| |||| || |||||||||||| ||||||| |||||||| |
|
|
| T |
51213050 |
agggacttgaaacgatggtcggtgagcatggagcacaactctctggaggccaaaagcaaagaattgctatagcaagagcaattctgaaagatccaagaat |
51213149 |
T |
|
| Q |
303 |
cctacttcttgatgaagctacaagtgcccttgatgcagaatctgagagaattgtacaagaggcattggaaagaataatgataaaccggacgacaatcgtc |
402 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||| ||| | ||||||||| | |||| ||||| ||||||||||| || || ||| | |
|
|
| T |
51213150 |
tctactccttgatgaagcaacaagtgcccttgatgcagaatctgaaagagtagtacaagagaccctggacagaattatgataaaccgaacaaccatcatt |
51213249 |
T |
|
| Q |
403 |
gtagctcaccgcttaagtacaatcagaaatgttgataccattgctgtcattc |
454 |
Q |
| |
|
|||||||||||| |||| ||||| || || | ||||| ||||||||| |||| |
|
|
| T |
51213250 |
gtagctcaccgcctaagcacaataaggaacgctgatatcattgctgttattc |
51213301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 51145645 - 51145792
Alignment:
| Q |
19 |
ctctttacttgtagcattaagaagaatatttcctatggcaaggatggggcaactgttgaagaaataagagctgcagcggaacttgctaatgctgccaaat |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||| | ||||||||||| | ||||||| ||||||||| |||| |||||| ||||||||||||||||| |||| |
|
|
| T |
51145645 |
ctctttacttgtagcattaaggagaatattgcatatggcaaggactgtgcaactgatgaagaaatcagagttgcagcagaacttgctaatgctgctaaat |
51145744 |
T |
|
| Q |
119 |
ttatagacaaactccctcaggtgaattctcaaatcttcatttcaaaag |
166 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
51145745 |
ttatagataaacttcctcaggtgaaatctcaaatcttcatttaaaaag |
51145792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 51156786 - 51156933
Alignment:
| Q |
19 |
ctctttacttgtagcattaagaagaatatttcctatggcaaggatggggcaactgttgaagaaataagagctgcagcggaacttgctaatgctgccaaat |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||| | ||||||||||| | ||||||| ||||||||| |||| |||||| ||||||| ||| |||||||||| |
|
|
| T |
51156786 |
ctctttacttgtagcattaaggagaatattgcatatggcaaggactgtgcaactgatgaagaaatcagagttgcagcagaacttggtaacgctgccaaat |
51156885 |
T |
|
| Q |
119 |
ttatagacaaactccctcaggtgaattctcaaatcttcatttcaaaag |
166 |
Q |
| |
|
||||||| ||||| ||||||||||| | |||||||||||||| ||||| |
|
|
| T |
51156886 |
ttatagataaacttcctcaggtgaactttcaaatcttcatttaaaaag |
51156933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 51199634 - 51199758
Alignment:
| Q |
19 |
ctctttacttgtagcattaagaagaatatttcctatggcaaggatggggcaactgttgaagaaataagagctgcagcggaacttgctaatgctgccaaat |
118 |
Q |
| |
|
||||||||||| |||||||| |||| ||| | |||||||||||||| || |||| ||||||||| ||||||||||| || ||||||||||||||||||| |
|
|
| T |
51199634 |
ctctttacttgcagcattaaagagaacattgcatatggcaaggatggtgctactgatgaagaaatcagagctgcagccgagcttgctaatgctgccaaat |
51199733 |
T |
|
| Q |
119 |
ttatagacaaactccctcaggtgaa |
143 |
Q |
| |
|
||||||| ||||| ||||||||||| |
|
|
| T |
51199734 |
ttatagataaacttcctcaggtgaa |
51199758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 51212780 - 51212874
Alignment:
| Q |
19 |
ctctttacttgtagcattaagaagaatatttcctatggcaaggatggggcaactgttgaagaaataagagctgcagcggaacttgctaatgctgc |
113 |
Q |
| |
|
|||||||||||||||||||| |||| ||| ||||||| ||||||| |||||| | ||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
51212780 |
ctctttacttgtagcattaaagagaacattgcctatggtaaggatgcggcaaccgatgaagaaatccgagctgcagcagaacttgctaatgctgc |
51212874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 5e-37; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 203 - 470
Target Start/End: Complemental strand, 49736997 - 49736730
Alignment:
| Q |
203 |
agggactagacacgatggttggtgagcatggaatacaactctctggaggacaaaagcaaagagttgcaattgcaagagcaattttgaaagacccaagaat |
302 |
Q |
| |
|
||||||| |||||||||||||| || |||||| ||||| |||||||| |||||||||||| | || || |||||||||||| ||||||| |||||||| |
|
|
| T |
49736997 |
agggacttgacacgatggttggcgaacatggagctcaactttctggaggccaaaagcaaagaatagctatagcaagagcaattctgaaagatccaagaat |
49736898 |
T |
|
| Q |
303 |
cctacttcttgatgaagctacaagtgcccttgatgcagaatctgagagaattgtacaagaggcattggaaagaataatgataaaccggacgacaatcgtc |
402 |
Q |
| |
|
||||| || |||||||| |||||||||||||| ||||| || || ||| | ||||||||| | | |||||||| ||||||||||| || | ||| | |
|
|
| T |
49736897 |
tctactcctagatgaagcaacaagtgcccttgacgcagagtcggaaagagtggtacaagagacgctagaaagaattatgataaaccgaacaatgatcatt |
49736798 |
T |
|
| Q |
403 |
gtagctcaccgcttaagtacaatcagaaatgttgataccattgctgtcattcgtcaaggaaaaatagt |
470 |
Q |
| |
|
||||| |||||| |||| ||||| || |||| ||||| |||||| || |||| ||||||||| |||| |
|
|
| T |
49736797 |
gtagcccaccgcctaagcacaataaggaatgctgatatcattgccgttattcaccaaggaaaagtagt |
49736730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 232 - 387
Target Start/End: Original strand, 36286288 - 36286443
Alignment:
| Q |
232 |
ggaatacaactctctggaggacaaaagcaaagagttgcaattgcaagagcaattttgaaagacccaagaatcctacttcttgatgaagctacaagtgccc |
331 |
Q |
| |
|
||||| || ||||| || || |||||||| |||||||| || || ||| ||||||| ||||| |||||||| || ||||||||||| ||||| ||||||| |
|
|
| T |
36286288 |
ggaatgcagctctcagggggtcaaaagcagagagttgctatagctagatcaattttaaaagatccaagaattcttcttcttgatgaggctactagtgccc |
36286387 |
T |
|
| Q |
332 |
ttgatgcagaatctgagagaattgtacaagaggcattggaaagaataatgataaac |
387 |
Q |
| |
|
|||||| |||||||| | ||| ||||| |||||| | || | ||| ||||||||| |
|
|
| T |
36286388 |
ttgatgtggaatctgaaaaaatagtacaggaggcactagacaaaatcatgataaac |
36286443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 49737234 - 49737140
Alignment:
| Q |
19 |
ctctttacttgtagcattaagaagaatatttcctatggcaaggatggggcaactgttgaagaaataagagctgcagcggaacttgctaatgctgc |
113 |
Q |
| |
|
|||||||||||||||||||| |||| ||| ||||||| |||||||| ||||| | ||||||||| ||||||||| | ||||| ||||| ||||| |
|
|
| T |
49737234 |
ctctttacttgtagcattaaagagaacattgcctatggtaaggatggagcaacagatgaagaaatcagagctgcaacagaactagctaaagctgc |
49737140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 235 - 347
Target Start/End: Complemental strand, 49734195 - 49734083
Alignment:
| Q |
235 |
atacaactctctggaggacaaaagcaaagagttgcaattgcaagagcaattttgaaagacccaagaatcctacttcttgatgaagctacaagtgcccttg |
334 |
Q |
| |
|
|||||||| ||||||||||| |||||| | || |||||||||||||| || | || | |||||||| |||| || |||||||| |||||||| |||| |
|
|
| T |
49734195 |
atacaactttctggaggacagaagcaacgtgtggcaattgcaagagccatagttaagaatccaagaatattactactagatgaagccacaagtgcacttg |
49734096 |
T |
|
| Q |
335 |
atgcagaatctga |
347 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
49734095 |
atgctgagtctga |
49734083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 7e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 202 - 347
Target Start/End: Complemental strand, 38525423 - 38525278
Alignment:
| Q |
202 |
cagggactagacacgatggttggtgagcatggaatacaactctctggaggacaaaagcaaagagttgcaattgcaagagcaattttgaaagacccaagaa |
301 |
Q |
| |
|
|||||| | ||||| ||||||||||| ||||||| ||||| ||||| ||||| ||||| | |||| |||||||||||||| | || | ||||||| |
|
|
| T |
38525423 |
cagggattggacacaatggttggtgaccatggaactcaactgtctggtggacagaagcagcgcattgcgattgcaagagcaatccttaagaatccaagaa |
38525324 |
T |
|
| Q |
302 |
tcctacttcttgatgaagctacaagtgcccttgatgcagaatctga |
347 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38525323 |
ttctacttcttgatgaagctacaagtgcacttgatgcagaatctga |
38525278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 347
Target Start/End: Complemental strand, 38566551 - 38566415
Alignment:
| Q |
211 |
gacacgatggttggtgagcatggaatacaactctctggaggacaaaagcaaagagttgcaattgcaagagcaattttgaaagacccaagaatcctacttc |
310 |
Q |
| |
|
||||| ||||||||||| ||||||| || || ||||| || || ||||| | |||| |||||||||||||| | || | |||||||| |||||| |
|
|
| T |
38566551 |
gacacaatggttggtgaccatggaagtcagctttctggtgggcagaagcagcgcattgccattgcaagagcaatacttaagaatccaagaattttacttc |
38566452 |
T |
|
| Q |
311 |
ttgatgaagctacaagtgcccttgatgcagaatctga |
347 |
Q |
| |
|
| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
38566451 |
tagatgaagctacaagtgcacttgatgcaaaatctga |
38566415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 140
Target Start/End: Complemental strand, 38566914 - 38566805
Alignment:
| Q |
31 |
agcattaagaagaatatttcctatggcaaggatggggcaactgttgaagaaataagagctgcagcggaacttgctaatgctgccaaatttatagacaaac |
130 |
Q |
| |
|
||||||||| | || ||||| ||||| || ||||| ||||| ||||||| |||||| ||||| | |||||||| || ||||||||||| || || |||| |
|
|
| T |
38566914 |
agcattaaggataacatttcatatggtaaagatggagcaacgattgaagagataagatctgcatctgaacttgcaaacgctgccaaattcattgataaac |
38566815 |
T |
|
| Q |
131 |
tccctcaggt |
140 |
Q |
| |
|
| || ||||| |
|
|
| T |
38566814 |
tgccccaggt |
38566805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 238 - 329
Target Start/End: Complemental strand, 5832097 - 5832006
Alignment:
| Q |
238 |
caactctctggaggacaaaagcaaagagttgcaattgcaagagcaattttgaaagacccaagaatcctacttcttgatgaagctacaagtgc |
329 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||||||||||||| ||||| ||||| |||||| |||||| |||||||||||||| |||||||| |
|
|
| T |
5832097 |
caactttctggtggacaaaagcaaagaattgcaattgcaagggcaatattgaagaacccaaaaatccttcttcttgatgaagcaacaagtgc |
5832006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 5766110 - 5766201
Alignment:
| Q |
238 |
caactctctggaggacaaaagcaaagagttgcaattgcaagagcaattttgaaagacccaagaatcctacttcttgatgaagctacaagtgc |
329 |
Q |
| |
|
||||| ||||| ||||||||||||||| |||||||||| || ||||| ||||| ||||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
5766110 |
caactttctggtggacaaaagcaaagaattgcaattgctagggcaatattgaagaacccaagaatccttcttctcgatgaagcaacaagtgc |
5766201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 5823503 - 5823594
Alignment:
| Q |
238 |
caactctctggaggacaaaagcaaagagttgcaattgcaagagcaattttgaaagacccaagaatcctacttcttgatgaagctacaagtgc |
329 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||||||||||||| || || ||||| | ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
5823503 |
caactttctggtggacaaaagcaaagaattgcaattgcaagggccatattgaagaatccaagaatccttcttcttgatgaagcaacaagtgc |
5823594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 238 - 329
Target Start/End: Complemental strand, 29329625 - 29329534
Alignment:
| Q |
238 |
caactctctggaggacaaaagcaaagagttgcaattgcaagagcaattttgaaagacccaagaatcctacttcttgatgaagctacaagtgc |
329 |
Q |
| |
|
||||| |||||||| |||||||||||| |||||||||| || ||||| ||||| |||| | ||| || |||||||||||||| |||||||| |
|
|
| T |
29329625 |
caactttctggagggcaaaagcaaagaattgcaattgctagggcaatattgaagaaccctaaaattcttcttcttgatgaagcaacaagtgc |
29329534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 365
Target Start/End: Complemental strand, 3431290 - 3431144
Alignment:
| Q |
219 |
ggttggtgagcatggaatacaactctctggaggacaaaagcaaagagttgcaattgcaagagcaattttgaaagacccaagaatcctacttcttgatgaa |
318 |
Q |
| |
|
||||||||||| ||| | ||| | ||||| |||||||||||||| |||||||||||||||| || |||||| | |||| ||||| || | || ||| |
|
|
| T |
3431290 |
ggttggtgagcgaggagttcaattatctggtggacaaaagcaaaggattgcaattgcaagagctatgttgaaaaatccaaagatccttctcttagacgaa |
3431191 |
T |
|
| Q |
319 |
gctacaagtgcccttgatgcagaatctgagagaattgtacaagaggc |
365 |
Q |
| |
|
|| || ||||| || ||||||| ||| || || ||||| |||||||| |
|
|
| T |
3431190 |
gcaactagtgctctcgatgcaggatccgaaagcattgttcaagaggc |
3431144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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