View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_11 (Length: 502)
Name: NF17844_low_11
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Complemental strand, 10970092 - 10969601
Alignment:
| Q |
1 |
aacttcatagataaaatagccacattagccaaaagttaccctacttcacacacacattagctttttgtaaatataataacacctacacacaaagatccat |
100 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10970092 |
aacttcatagataaaatagctacattagccaaaagctaccctacttcacacacaaattagctttttgtaaatataataacacctacacacaaagatccat |
10969993 |
T |
|
| Q |
101 |
ttagctagctagaagaaaaataaaatcataaatagctagctag--------gtatacatgaatttccctctcacattattttatcaaaataagaaagaaa |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10969992 |
ttagctagctagaagaaaaataaaatcataaatagctagctagctagctaggtatacatgaatttccctctcacattattttatcaaaataagaaagaaa |
10969893 |
T |
|
| Q |
193 |
atcccatgggacattctaattaactccatattcatgtggctcgaacaagtggtgaatgaggagatatgattatgtgattgtgaggtgacaaaacattctc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10969892 |
atcccatgggacattctaattaactccatattcatgtggctcgaacaagtggtgaatgaggagatatgattatgtgattgtgaggtgacaaaacattctc |
10969793 |
T |
|
| Q |
293 |
atcaaacctccttgaagtgaagctaagacttaaatttggttgccaacgtttgacttcaattttcttctttgtttctttccctacaaatgctcttatcctt |
392 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10969792 |
atcaaacctcgttgaagtgaagctaagacttaaatttggttgccaacgtttgacttcaattttcttctttgtttctttccctacaaatgctcttatcctt |
10969693 |
T |
|
| Q |
393 |
tgcaatgcaatttccaccgtttcatcatcaatattagcaaaacaaaccctaaaccaaccaacctcagagcaattaaaagaagaccccggtga |
484 |
Q |
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| T |
10969692 |
tgcaatgcaatttccaccgtttcatcatcaatattagcaaaacaaaccctaaaccaaccaacctcagagcaattaaaagaagaccccggtga |
10969601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 7754209 - 7754327
Alignment:
| Q |
147 |
tacatgaatttccctctcacattattttatcaaaataagaaagaaaatcccatgggacattctaattaactc---catattcatgtggctcgaacaagtg |
243 |
Q |
| |
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||||| |||| |||| ||||||||||||||||||||||||||||||| |||| | || |||||||| | || ||||| ||||| ||||||||||||| |
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| T |
7754209 |
tacataaattcccctagcacattattttatcaaaataagaaagaaaattccatagaactttctaatttattccatcatatccatgttgctcgaacaagtg |
7754308 |
T |
|
| Q |
244 |
gtgaatgaggagatatgat |
262 |
Q |
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||||||||||| ||||||| |
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| T |
7754309 |
gtgaatgaggaaatatgat |
7754327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 7754331 - 7754388
Alignment:
| Q |
289 |
tctcatcaaacctccttgaagtgaagctaagacttaaatttggttgccaacgtttgacttcaa |
351 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7754331 |
tctcatcaaacctccttgaagtgaagc-----cttaaatttggttgccaacgtttgacttcaa |
7754388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 476
Target Start/End: Original strand, 7754395 - 7754447
Alignment:
| Q |
424 |
tattagcaaaacaaaccctaaaccaaccaacctcagagcaattaaaagaagac |
476 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |
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| T |
7754395 |
tattagcaaaacaaaccctaaaccgaccaacctcgaagcaattaaaacaagac |
7754447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 271 - 471
Target Start/End: Original strand, 29963392 - 29963595
Alignment:
| Q |
271 |
tgtgaggtgacaaaacattctcatcaaacctccttgaagtgaagctaagacttaaatttggttgccaacgtttgacttcaattttcttctttgtttct-t |
369 |
Q |
| |
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||||||| |||| |||||||||||||||||| ||||||| |||||||| || | ||| | ||||||||||| ||||| | | ||| | ||||| | |
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| T |
29963392 |
tgtgaggagacataacattctcatcaaaccttcttgaagaaaagctaagtctaagattactcttccaacgtttgatttcaactgttttccctttttctct |
29963491 |
T |
|
| Q |
370 |
tccct--acaaatgctcttatcctttgcaatgcaatttccaccgtttcatcatcaatattagcaaaacaaaccctaaaccaaccaacctcagagcaatta |
467 |
Q |
| |
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||| | ||||||||||| || || ||||||||| || || ||||||| ||| || |||||||||||||| ||| |||||||| ||||||||||||| |
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| T |
29963492 |
tccattaacaaatgctctaattctcctcaatgcaatctcaactgtttcatgatccatgttagcaaaacaaactctataccaaccaggctcagagcaatta |
29963591 |
T |
|
| Q |
468 |
aaag |
471 |
Q |
| |
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|||| |
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|
| T |
29963592 |
aaag |
29963595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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