View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_15 (Length: 455)
Name: NF17844_low_15
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 17 - 442
Target Start/End: Complemental strand, 9651502 - 9651077
Alignment:
| Q |
17 |
cattatgtgctataaaagtcaaccttggtgacctcctacaacgagtatcccatattgcaatgcttttatccacagaacaagaagcaaaaacatcaggctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9651502 |
cattatgtgctataaaagtcaaccttggtgacctcctacaacgagtatcccatattgcaatgcttttatccacagaacaagaagcaaaaacatcaggctt |
9651403 |
T |
|
| Q |
117 |
aggactccactgcagggattcattaaacgatagaactctcgttatacatgtaaataaataaaaactacacatgttagaggttggaatgctctaaatattt |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
9651402 |
aggactccactgcagggattcattaaacaatagaactctcattatacatgtaaataaataaaaactaaatatgttagaggttggaatgctctaaatattt |
9651303 |
T |
|
| Q |
217 |
aaccaaaaccagaagaaaacaaggtagtactttgcacattagtacatacttgcagatcttcaacactatccgtatgtccagtaaagggagtttggtcaat |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
9651302 |
aaccaaaaccagaagaaaacaaggtggtactttgcacattagtacatacttgcagatcttcaacactacccgtatgtcccgtaaagggagtttggtcaat |
9651203 |
T |
|
| Q |
317 |
attccatgttgcagcagacgtaggctcccacagataaatattattattgcaatccccttcaaacatgaagatcagcatttagcctcatatctctttaata |
416 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9651202 |
attccatgttgcagcagacgtaggctcccatagataaatattattattgcaatccccttcaaacatgaagatcagcatttagcctcatatctctttaata |
9651103 |
T |
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| Q |
417 |
accaaatataaagacatgctacagaa |
442 |
Q |
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| T |
9651102 |
accaaatataaagacatgctacagaa |
9651077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 257 - 390
Target Start/End: Original strand, 34736304 - 34736437
Alignment:
| Q |
257 |
agtacatacttgcagatcttcaacactatccgtatgtccagtaaagggagtttggtcaatattccatgttgcagcagacgtaggctcccacagataaata |
356 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34736304 |
agtacatacttgcagatcttcaacactatcagtatgtccagtaaaaggagttttttcaatattccatgttgcagcagatgtaggctcccacagataaata |
34736403 |
T |
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| Q |
357 |
ttattattgcaatccccttcaaacatgaagatca |
390 |
Q |
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| T |
34736404 |
ctattattgcaatcccctacaaacatgaagatca |
34736437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 180
Target Start/End: Original strand, 34736101 - 34736242
Alignment:
| Q |
42 |
tggtgacctcctacaacgagtatcccatattgcaatgcttttatccacagaacaagaagcaaaaacatcaggct---taggactccactgcagggattca |
138 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | |||| |||||||||| || |||| |
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| T |
34736101 |
tggtgacctccccaaacgagtatcccatattgcaatgcttttatccacagagcaagaagcaaaaacatgaggttctgtagggctccactgcaagggttca |
34736200 |
T |
|
| Q |
139 |
ttaaacgatagaactctcgttatacatgtaaataaataaaaa |
180 |
Q |
| |
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|| ||| | ||||| || |||||||| ||| ||||| |||| |
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| T |
34736201 |
ttgaacaacagaacgcttattatacatataagtaaattaaaa |
34736242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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