View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_18 (Length: 444)
Name: NF17844_low_18
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 13702859 - 13703007
Alignment:
| Q |
10 |
attatactcaacaacaaaatgttcaggtgtagaaatagaatcaacactattagcaatagcaaaacctctagcaaatctnnnnnnnccagttccaccaaca |
109 |
Q |
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| T |
13702859 |
attatactcaacaacaaaatgttcaggtgtagaaatagaatcaacatgatttgcaatagcaaaccctctagcaaatctaaaaacaccagttccaccaaca |
13702958 |
T |
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| Q |
110 |
ataggcatttctctattttgttcagaaataggattccttcccaacatac |
158 |
Q |
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| T |
13702959 |
ataggcatttctctattttgttcagaaataggattccttcccaacatac |
13703007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 95 - 411
Target Start/End: Original strand, 30509464 - 30509780
Alignment:
| Q |
95 |
ccagttccaccaacaataggcatttctctattttgttcagaaataggattccttcccaacatactaagactacttccaccatattccccttccttaaaaa |
194 |
Q |
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| T |
30509464 |
ccagtcccaccaactattggcatttctctattttgttcagcaacaggattcctccctaacatgctaagtgtgctccctgcatagtttccatctgtgaaaa |
30509563 |
T |
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| Q |
195 |
caaaatttgtcaacataaacattccaagatcttgaagtgaagaaagaccaaacaacccttgagctcttccaatatggtttgaacttaactctggcccttc |
294 |
Q |
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| T |
30509564 |
taaaatttgtcaacataaacattccaatatcatgcagagaagcttgaccaaacaacccttgtgctcttccaatgtgctttgaactcatttctggcccttc |
30509663 |
T |
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| Q |
295 |
agtcattgcatcatccatcataaaagttgaaccaaatccattaggtacattttttggtgtgtcaatgatttgtactatggtgggatttttgttgtctcta |
394 |
Q |
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| T |
30509664 |
agtgatttcatcatccattacataagttgcaccaaatccattaggcacgttttcgggtgtgttaacaatttgcagaattgttgggttgtttttgttttta |
30509763 |
T |
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| Q |
395 |
atgtcatggtagtagaa |
411 |
Q |
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| T |
30509764 |
atgtcatggtagtagaa |
30509780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 95 - 411
Target Start/End: Complemental strand, 10971143 - 10970827
Alignment:
| Q |
95 |
ccagttccaccaacaataggcatttctctattttgttcagaaataggattccttcccaacatactaagactacttccaccatattccccttccttaaaaa |
194 |
Q |
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| T |
10971143 |
ccagtcccaccaactattgccatttctctattttgttcagcaacaggattcctccctaacatgctaagtgtgctccctgcatagtttccctctgtgaaaa |
10971044 |
T |
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| Q |
195 |
caaaatttgtcaacataaacattccaagatcttgaagtgaagaaagaccaaacaacccttgagctcttccaatatggtttgaacttaactctggcccttc |
294 |
Q |
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| T |
10971043 |
taaaatttgtcaacataaacattccaatatcatgcagagaagcttgaccaaacaacccttgtgctcttccaatgtgctttgaactcatttcaggcccttc |
10970944 |
T |
|
| Q |
295 |
agtcattgcatcatccatcataaaagttgaaccaaatccattaggtacattttttggtgtgtcaatgatttgtactatggtgggatttttgttgtctcta |
394 |
Q |
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| T |
10970943 |
agtgatttcatcatccattacataagttgcaccaaatccattaggcacgttttcaggtgtgttaacaatttgcacaattgttgggttgtttttgttttta |
10970844 |
T |
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| Q |
395 |
atgtcatggtagtagaa |
411 |
Q |
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| T |
10970843 |
atgtcatggtagtagaa |
10970827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 124
Target Start/End: Original strand, 37306566 - 37306595
Alignment:
| Q |
95 |
ccagttccaccaacaataggcatttctcta |
124 |
Q |
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| T |
37306566 |
ccagttccaccaacaataggcatttctcta |
37306595 |
T |
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