View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17844_low_19 (Length: 430)
Name: NF17844_low_19
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 10 - 411
Target Start/End: Original strand, 11542068 - 11542469
Alignment:
| Q |
10 |
aagaaaataagctatacaggttaagtcatagatggaataaaaatttctttcatctttccaaacatggatttgaaccttacagatttttggcagcaaacaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11542068 |
aagaaaataagctatacaggttaagtcatagatggaataaaaatttctttcatctttccaaacatggatttgaaccttacagatttttggcagcaaacaa |
11542167 |
T |
|
| Q |
110 |
aatacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11542168 |
aatacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctc |
11542267 |
T |
|
| Q |
210 |
ttgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11542268 |
ttgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaa |
11542367 |
T |
|
| Q |
310 |
gcgtagtcctcggcggagtactgatgagaccataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11542368 |
gcgtagtcctcggcggagtactgatgagaccataagcaattgccaaacattcactatgatactgcaaagccttttctttttcctcttcatcaatgtcatg |
11542467 |
T |
|
| Q |
410 |
ga |
411 |
Q |
| |
|
|| |
|
|
| T |
11542468 |
ga |
11542469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 10 - 411
Target Start/End: Original strand, 34614613 - 34615014
Alignment:
| Q |
10 |
aagaaaataagctatacaggttaagtcatagatggaataaaaatttctttcatctttccaaacatggatttgaaccttacagatttttggcagcaaacaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34614613 |
aagaaaataagctatacaggttaagtcatagatggaataaaattttctttcatctttccaaacatggatttgaaccttacagatttttggcagcaaacaa |
34614712 |
T |
|
| Q |
110 |
aatacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34614713 |
aatacaatctagcaatatatcatcagagtatctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctc |
34614812 |
T |
|
| Q |
210 |
ttgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34614813 |
ttgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaa |
34614912 |
T |
|
| Q |
310 |
gcgtagtcctcggcggagtactgatgagaccataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatg |
409 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
34614913 |
gagtagtcctcggcggagtactgatgagaccataagcaattgccaaacgttcactatgatactgcaaagccttttccttttcctcctcatcaatgtcatg |
34615012 |
T |
|
| Q |
410 |
ga |
411 |
Q |
| |
|
|| |
|
|
| T |
34615013 |
ga |
34615014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 140 - 411
Target Start/End: Original strand, 34757289 - 34757560
Alignment:
| Q |
140 |
tctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttcca |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34757289 |
tctacatttttaccaacactaccaataatctccacaagagcattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttcca |
34757388 |
T |
|
| Q |
240 |
acaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactgatgagac |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34757389 |
acaatcttggacatgattttgatagcattgtgacagtctccacatatacgtagattcttgataattctaagagtagtcctcggcggagtactgatgagac |
34757488 |
T |
|
| Q |
340 |
cataagcaattgccaaacgttcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatgga |
411 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34757489 |
cataagcaattgccaaacattcactatgatactgcaaagccttttctttttcctcctcatcaatgtcatgga |
34757560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 180 - 411
Target Start/End: Original strand, 34742222 - 34742453
Alignment:
| Q |
180 |
cattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttccaacaatcttggacatgattttgatagcattgtgacagtctc |
279 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| | | |||| |||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
34742222 |
cattttccatctttgaaatgatgaaatctcttgttgtccctcacaatgagtttcattcccacaatcttagacatgaatttgatagcattgtgacagtctc |
34742321 |
T |
|
| Q |
280 |
cacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactgatgagaccataagcaattgccaaacgttcactatgatattgcaaagc |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||| |||| || |
|
|
| T |
34742322 |
cacatatacgtagattcttgataattctaagcatagtccttggcggagtactgatgagaccataagctattgccaaacgctcgctatgatatcgcaaggc |
34742421 |
T |
|
| Q |
380 |
cttttctttttcctcctcatcaatgtcatgga |
411 |
Q |
| |
|
|| || ||||||||||||||||| ||||||| |
|
|
| T |
34742422 |
tttctccttttcctcctcatcaatatcatgga |
34742453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 34741971 - 34742077
Alignment:
| Q |
30 |
ttaagtcatagatggaataaaaatttctttcatctttccaaacatggatttgaaccttacagatttttggcagcaaacaaaatacaatctagcaatatat |
129 |
Q |
| |
|
|||| |||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
34741971 |
ttaattcatagatggaacaaaaatttctttgatcttcccaaacatggagttgaaccttacacatttttggcagcaaacaaaaaacaatttaacaatatat |
34742070 |
T |
|
| Q |
130 |
catcaga |
136 |
Q |
| |
|
||||||| |
|
|
| T |
34742071 |
catcaga |
34742077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 148
Target Start/End: Original strand, 34757254 - 34757287
Alignment:
| Q |
115 |
aatctagcaatatatcatcagagtatctacattt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
34757254 |
aatctagcaatatatcatcagagtatctacattt |
34757287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 11541461 - 11541565
Alignment:
| Q |
27 |
aggttaagtcatagatggaataaaaatttctttcatctttccaaacatggatttgaaccttacagatttttggcagcaaacaaaatacaatctagcaata |
126 |
Q |
| |
|
||||||| ||||| ||| || |||| ||| || ||||| |||||| |||||| ||||||||| ||||| || ||||||||||| | ||||||||||| |
|
|
| T |
11541461 |
aggttaattcatacatgaaacaaaactttgcttgatcttcccaaactaggatttcaaccttacacatttt-ggaagcaaacaaaa--cgatctagcaata |
11541557 |
T |
|
| Q |
127 |
tatcatca |
134 |
Q |
| |
|
|||||||| |
|
|
| T |
11541558 |
tatcatca |
11541565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 160 - 409
Target Start/End: Original strand, 33778995 - 33779244
Alignment:
| Q |
160 |
accaataatctccacaagagcattttccatctttgaaatgatggaatctcttgttgtccctcacaatgagctcccttccaacaatcttggacatgatttt |
259 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| ||||||||||| || || ||||| || || ||||| || ||||| || |||||| | |||||||| || |
|
|
| T |
33778995 |
accagtaatccccacaagagcattttccatccttgaaatgatgaaaccttttgttatctctaacaatcagttccctccctacaatcctagacatgatctt |
33779094 |
T |
|
| Q |
260 |
gatagcattgtgacagtctccacatatacgtagattcttgataattctaagcgtagtcctcggcggagtactgatgagaccataagcaattgccaaacgt |
359 |
Q |
| |
|
||| |||||||||||||| ||||| | ||| || ||||||||||| ||||| | || || || |||||||| || |||||||| |||||||| | ||| |
|
|
| T |
33779095 |
gatggcattgtgacagtcaccacagacacgaaggttcttgataatcctaagaggtgttctaggaggagtactaataagaccataggcaattgctagacgc |
33779194 |
T |
|
| Q |
360 |
tcactatgatattgcaaagccttttctttttcctcctcatcaatgtcatg |
409 |
Q |
| |
|
||||| || || |||| |||| || ||| | |||| |||||||||||| |
|
|
| T |
33779195 |
tcactgtggtagagcaaggcctgctcctttgcttcctgatcaatgtcatg |
33779244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 17993032 - 17992990
Alignment:
| Q |
157 |
actaccaataatctccacaagagcattttccatctttgaaatg |
199 |
Q |
| |
|
||||||| ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
17993032 |
actaccagtaatcaccacaagagcatttcccatctttgaaatg |
17992990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University