View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_2 (Length: 802)
Name: NF17844_low_2
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 195 - 790
Target Start/End: Original strand, 14567904 - 14568494
Alignment:
| Q |
195 |
atcaacaaagagttccaatggggggtacctgtaaatacgacttgttgtgtaacgtttattcccacggcgagaacatctgcgccacttgtgaatacaacat |
294 |
Q |
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| T |
14567904 |
atcaacaaagagttccaatggggggtacctgtaaatacgacttgttgtgtaacgtttatccccacagcaagaacatctgcgccacttgtgaatacaacat |
14568003 |
T |
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| Q |
295 |
ctgcagcatctggatcacctaatatctggaatcaaatccaactgaaaatttagatagatcaagcggtaagcggtgtaattgttttacggagtttatttca |
394 |
Q |
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| T |
14568004 |
ctgcagcatctggatcacctaatatctggaatcaaatccaactgaaaatttagatagatcaagcggtgagcggtatgacagttttatggagtttatttca |
14568103 |
T |
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| Q |
395 |
aggaatttgaatacaaaatggaaatacttacatttgtttcagcagcaggattcacacttccatttactgcaaaagctccaccaagcagaacaagctgact |
494 |
Q |
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| T |
14568104 |
ag-aatttgaatgaaaaatggaaatacttacatttgtttcagcagaaggattcacacttccatttactgcaaaagctccaccaagcagaacaatctgacc |
14568202 |
T |
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| Q |
495 |
aatgttcttcgaaaattctgggtccatttgtatagcctgccaagcagaatttttccgtgagacaaagtacaaagagtaacgtgaaaataacatatttgaa |
594 |
Q |
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| T |
14568203 |
aatgttcttagaaaattccgggtccatctgtatagcctgccatgcagaattttgtcgtgtgacaaagtacgaagagtaac----aaataacatagttgaa |
14568298 |
T |
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| Q |
595 |
attgcaaacatatcataccaaagcaatatttgtaagaggacctaatgccacaaccgtggtttttccacggttagcttttgcttggttaactaaaaaagaa |
694 |
Q |
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| T |
14568299 |
attgcaaacatatcataccaaagcaatatttgtaagaggacctaatgccacaaccgtgatttttccacggttagcttttgcttggttaacaaaaaaagca |
14568398 |
T |
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| Q |
695 |
gcagctgattcttcaatgggtttcccgtttggtggtgggaaattttggttgccaagtccatctgcaccatggacagagtccctaatgtcaagtttt |
790 |
Q |
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| T |
14568399 |
gcagctgattcttcaaggggttttccatttggtggtggaaaattttggttgccaagtccatctgcaccatggacagaatccctaatatgaagtttt |
14568494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 218 - 769
Target Start/End: Original strand, 14575619 - 14576176
Alignment:
| Q |
218 |
ggtacctgtaaatacgacttgttgtgtaacgtttattcccacggcgagaacatctgcgccacttgtgaatacaacatctgcagcatctggatcacctaat |
317 |
Q |
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| T |
14575619 |
ggtacctgacaatacgacttggtgagtgacatttattcccactgcgagtatatctgcgccacttgtgaacacaacatctgcagcatctggatcaccgaat |
14575718 |
T |
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| Q |
318 |
atctggaatcaaatccaactgaaaatttagatagat----caagcggtaagcggtgtaattgtttt--acggagtttatttcaaggaatttgaatacaaa |
411 |
Q |
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| T |
14575719 |
atctggaatcaaatccaattgaagagttagatagatatatcaagcagcgactgatatcattttttttaatggaatttatattaagaaatt-gaatacaaa |
14575817 |
T |
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| Q |
412 |
atggaaatacttacatttgtttcagcagcaggattcacacttccatttactgcaaaagctccaccaagcagaacaagctgactaatgttcttcgaaaatt |
511 |
Q |
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| T |
14575818 |
atagacatacttacatttgcttcagcagctggattcacattgccatttactgcgaaagatccaccaagtagaacgatctgtccaatgttcttagcgaatt |
14575917 |
T |
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| Q |
512 |
ctgggtccatttgtatagcctgccaagcagaatttttccgtgagacaaagtacaaagagta-acgtgaaaataacatatttgaaattgcaaacatatcat |
610 |
Q |
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| T |
14575918 |
ctgggtccatctgtatagcctgccaaaaataaacttggcatgaaacaaagtgtgaagagacgatgagaaaatgacaaattggacattgcaaacataacaa |
14576017 |
T |
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| Q |
611 |
accaaagcaatatttgtaagaggacctaatgccacaaccgtggtttttccacggttagcttttgcttggttaactaaaaaagaagcagctgattcttcaa |
710 |
Q |
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| T |
14576018 |
accaaagcaatatttgtaagaggacccaatgccacgacagtgatttttccggggttagcttttgcttggttaaccaaaaaagaagcagctgattcttcaa |
14576117 |
T |
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| Q |
711 |
tgggtttcccgtttggtggtgggaaattttggttgccaagtccatctgcaccatggaca |
769 |
Q |
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| T |
14576118 |
tgggtttcccatttggtggtggaaaattttggttgccaagtccatctgcaccatggaca |
14576176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 14567858 - 14567895
Alignment:
| Q |
13 |
atgaatcaaaatttaaaaagcagcatgatcatgttgtt |
50 |
Q |
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| T |
14567858 |
atgaatcaaaattaaaatagcagcatgatcatgttgtt |
14567895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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