View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_20 (Length: 422)
Name: NF17844_low_20
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_20 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 27 - 422
Target Start/End: Complemental strand, 21942987 - 21942595
Alignment:
| Q |
27 |
tgaatcatatatattatgtaattaaattaataccattttaagtatttttaccaagtggattttgagggagggagactaagacatagttatatggcacact |
126 |
Q |
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| T |
21942987 |
tgaatcacatatcttatgtaatcaaattaataccattttaagtatttt-actaagtggatt--gagggagggagactgagacatagttatatggcacact |
21942891 |
T |
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| Q |
127 |
gaaacaatggaaatatatattatacaagctacaaactcaggtaattacacatttgcaaacttgttagccaggcaaattataggtttctaatggctttcaa |
226 |
Q |
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| T |
21942890 |
gaaacaatgtaaatatgtattatacaagctacaaactcatgtaattacacatatgcaaacttgttagccaggcaaattataggtttttaatggctttcaa |
21942791 |
T |
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| Q |
227 |
cactttgatgaaaatgggaatttcttttatttcccttatttataagttttgtcagcttctgaacgctttaaccctgataaaagcttcagagcatcttcca |
326 |
Q |
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| T |
21942790 |
cactttgatgaaaatgggaatttcttttatttcccttatttagaagttttgtcatcttcggaacgctttaaccctgataaaagcttcagagcatcttcca |
21942691 |
T |
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| Q |
327 |
tggatgggcgatcggacgatctgcttttactgcaaatcatagaaacttcaagaaccagtttaatctcttggattgtactagcagaagccacttcat |
422 |
Q |
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| T |
21942690 |
tggatgggcgatccgatgatctgcttttagtgcaaatcatagaaacttcaagaaccattttaatctcttggattgtacttgcagaagccacttcat |
21942595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 113 - 422
Target Start/End: Original strand, 10799296 - 10799586
Alignment:
| Q |
113 |
ttatatggcacactgaaacaatggaaatatatattatacaagctacaaactcaggtaattacacatttgcaaacttgttagccaggcaaattata-ggtt |
211 |
Q |
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| T |
10799296 |
ttatatggcacactgaaacaatggaaatatgtattatacaagctacaaactcattcagttacacatttgcaaacttattaaccatgcatattatatattt |
10799395 |
T |
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| Q |
212 |
tctaatggctttcaacactttgatgaaaatgggaatttcttttatttcccttatttataagttttgtcagcttctgaacgctttaaccctgataaaagct |
311 |
Q |
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| T |
10799396 |
tctaatggctttcaacactttgatgcaaatgagaattttttttatttcccttatttagaagtt------------------tttaa--ctgacaatagct |
10799475 |
T |
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| Q |
312 |
tcagagcatcttccatggatgggcgatcggacgatctgcttttactgcaaatcatagaaacttcaagaaccagtttaatctcttggattgtactagcaga |
411 |
Q |
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| T |
10799476 |
tcagagcatcttccatggatggccgatccgatgatctgcttctggtgcaaagcatagcaacctcaagaaccaatttaatctcttccattgaactggcaga |
10799575 |
T |
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