View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17844_low_21 (Length: 421)

Name: NF17844_low_21
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17844_low_21
NF17844_low_21
[»] chr7 (6 HSPs)
chr7 (19-202)||(13937597-13937780)
chr7 (19-202)||(39286628-39286811)
chr7 (271-415)||(13937850-13937994)
chr7 (269-415)||(39286878-39287024)
chr7 (19-202)||(9987422-9987604)
chr7 (23-199)||(17218303-17218479)
[»] chr3 (4 HSPs)
chr3 (19-202)||(15259681-15259864)
chr3 (269-415)||(15259468-15259614)
chr3 (23-199)||(33590845-33591020)
chr3 (337-415)||(15259378-15259456)
[»] chr2 (2 HSPs)
chr2 (19-191)||(31140328-31140500)
chr2 (269-365)||(31140588-31140684)
[»] scaffold0094 (1 HSPs)
scaffold0094 (23-202)||(6810-6988)
[»] chr5 (2 HSPs)
chr5 (19-202)||(21724279-21724461)
chr5 (19-202)||(21804015-21804197)
[»] chr8 (2 HSPs)
chr8 (19-202)||(14330807-14330989)
chr8 (58-168)||(24251537-24251645)
[»] chr4 (3 HSPs)
chr4 (57-198)||(30231040-30231180)
chr4 (65-147)||(18748671-18748751)
chr4 (124-168)||(18748626-18748670)
[»] chr1 (1 HSPs)
chr1 (57-198)||(23246701-23246840)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 13937597 - 13937780
Alignment:
19 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
13937597 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacttgatttttggttcaattt 13937696  T
119 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatata 202  Q
    ||||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
13937697 cttgtatttattttgttttacttattagggtttttagtgttcttaactacatggacctggattcacctttgttgttgaaatata 13937780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 39286628 - 39286811
Alignment:
19 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
39286628 tttcaaggtattactattcactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacttgatttttggttcaattt 39286727  T
119 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatata 202  Q
    ||||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
39286728 cttgtttttattttgttttacttattagggtttttagtgttcttaactacatggacctggattcacctttgttgttgaaatata 39286811  T

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Target: chr7; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 271 - 415
Target Start/End: Original strand, 13937850 - 13937994
Alignment:
271 tttttattcccttagcattgtttttaggtgctgttttgcttaggtgggtgttcctttggtttctattgtttgctaagatccatactcatgttaagattga 370  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| ||||    
13937850 tttttattcccttagtattgtttttaggtgatgttttgcttaggtgggtgttgctttggtttatattgtttgctaagatccatactcacgttaagcttga 13937949  T
371 ttcctatgtgtttcttgatttttgaagttttaatctttcggtggt 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
13937950 ttcctatgtgtttcttgatttttgaagttttaatctttcggtggt 13937994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 269 - 415
Target Start/End: Original strand, 39286878 - 39287024
Alignment:
269 gatttttattcccttagcattgtttttaggtgctgttttgcttaggtgggtgttcctttggtttctattgtttgctaagatccatactcatgttaagatt 368  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||| |||||| ||    
39286878 gatttttattcccttagtattgtttttaggtgatgttttgcttaggtgggtgttgctttggtttatattgttttctaagatccatactcacgttaagctt 39286977  T
369 gattcctatgtgtttcttgatttttgaagttttaatctttcggtggt 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
39286978 gattcctatgtgtttcttgatttttgaagttttaatctttcggtggt 39287024  T

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Target: chr7; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 9987422 - 9987604
Alignment:
19 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 118  Q
    |||||||||||||| || |||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||||||    
9987422 tttcaaggtattaccattcactctctctattataatatatgttcttttcaacaaatcaaccatgttcccataaacttgtgcctgattctttgttcaattt 9987521  T
119 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatata 202  Q
    |  | ||||||||||||||| || ||||| |||||||||||||||||||| | ||||| ||||||  |||| ||||||||||||    
9987522 c-agggtttattttgttttatttattagggtttttagtgtgcttaactacctagacctagattcatgtttgatgttgaaatata 9987604  T

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Target: chr7; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 17218479 - 17218303
Alignment:
23 aaggtattactatccactctctctatta-taatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttctt 121  Q
    |||||||||| || |||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||   ||| |     
17218479 aaggtattaccattcactctctctattaataatatgtgttatcttcaaaaaatcaaccatgttcccataaacttgtacttgattcttggttttgttt-ta 17218381  T
122 gtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaat 199  Q
    | |||||||||||||||||| |||||  |||||| |||||| || |  | ||||||||||||  |||| |||||||||    
17218380 gggtttattttgttttacttattagggattttagagtgctttaccatctagacctggattcatgtttgctgttgaaat 17218303  T

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Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 15259864 - 15259681
Alignment:
19 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
15259864 tttcaaggtattactattcactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacttgatttttggttcaattt 15259765  T
119 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatata 202  Q
    ||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
15259764 cttgtgtttattttgttttacttattagggtttttagtgttcttaactacatggacctggattcacctttgttgttgaaatata 15259681  T

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Target: chr3; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 269 - 415
Target Start/End: Complemental strand, 15259614 - 15259468
Alignment:
269 gatttttattcccttagcattgtttttaggtgctgttttgcttaggtgggtgttcctttggtttctattgtttgctaagatccatactcatgttaagatt 368  Q
    |||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
15259614 gatttttactcccttagtattgtttttaggtgctgttttgcttaggtgggtgttgctttggtttatattgtttgctaagatccatactcatgttaagatt 15259515  T
369 gattcctatgtgtttcttgatttttgaagttttaatctttcggtggt 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
15259514 gattcctatgtgtttcttgatttttgaagttttaatctttcggtggt 15259468  T

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Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 33590845 - 33591020
Alignment:
23 aaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttg 122  Q
    ||||||| || || |||||||||||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| | |    
33590845 aaggtatcaccattcactctctctattacaatatgtattctcttcaacaaatcaaccatgtttccataaacttgtacctgattcttagttcaattt-tag 33590943  T
123 tgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaat 199  Q
      |||||||| |||||||| ||| | ||||| |||||||||||||| | ||||||||||||| |||| |||||||||    
33590944 gatttattttattttacttattaaggtttttggtgtgcttaactacctagacctggattcacgtttgctgttgaaat 33591020  T

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Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 337 - 415
Target Start/End: Complemental strand, 15259456 - 15259378
Alignment:
337 tgtttgctaagatccatactcatgttaagattgattcctatgtgtttcttgatttttgaagttttaatctttcggtggt 415  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15259456 tgttggctaagatccatactcatgttaagattgattcctatgtgtttcttgatttttgaagttttaatctttcggtggt 15259378  T

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Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 31140328 - 31140500
Alignment:
19 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 118  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
31140328 tttcaaggtattactacccactctctctattataatgggtgttctcttcaacaaatcaaccatgttcccataaatttgtacctgatttttggttcaattt 31140427  T
119 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgtt 191  Q
    |||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||    
31140428 cttgtgtttattttgttttacttaatagggtttttagtgtgcttaactacatggacctggattcacctttgtt 31140500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 269 - 365
Target Start/End: Original strand, 31140588 - 31140684
Alignment:
269 gatttttattcccttagcattgtttttaggtgctgttttgcttaggtgggtgttcctttggtttctattgtttgctaagatccatactcatgttaag 365  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||    
31140588 gatttttattcccttagtattgtttttaggtgctgttttgcttaggtgggtgttgctttggtttatattgtttgctaagatccatattcatgttaag 31140684  T

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Target: scaffold0094 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 6810 - 6988
Alignment:
23 aaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttg 122  Q
    |||||||||| || |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | |    
6810 aaggtattaccattcactctctatattataatatgtgttctcttcaataaatcaaccatgttcccataaacttgtacctgattcttggttcaattt-tag 6908  T
123 tgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatata 202  Q
     |||||||||||||||||| ||||| ||||||| || ||| || || | ||||||||||||  ||| |||||||||||||    
6909 ggtttattttgttttacttattagggtttttagcgtcctttaccacctagacctggattcatgtttattgttgaaatata 6988  T

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Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 21724279 - 21724461
Alignment:
19 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 118  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||  |||||||||||||||||| ||||||||||||| ||||||| || |||||||||    
21724279 tttcaaggtattaccattcactctctatattataatatgtgttcttgtcaacaaatcaaccatgtacccataaacttgtgcctgattctttgttcaattt 21724378  T
119 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatata 202  Q
    |  | ||||||||||||||| || ||||| |||||||||||||||||||| | ||||||||||||  |||| ||||||||||||    
21724379 c-agggtttattttgttttatttattagggtttttagtgtgcttaactacctagacctggattcatgtttgatgttgaaatata 21724461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 21804015 - 21804197
Alignment:
19 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 118  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||  |||||||||||||||||| ||||||||||||| ||||||| || |||||||||    
21804015 tttcaaggtattaccattcactctctatattataatatgtgttcttgtcaacaaatcaaccatgtacccataaacttgtgcctgattctttgttcaattt 21804114  T
119 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatata 202  Q
    |  | ||||||||||||||| || ||||| |||||||||||||||||||| | ||||||||||||  |||| ||||||||||||    
21804115 c-agggtttattttgttttatttattagggtttttagtgtgcttaactacctagacctggattcatgtttgatgttgaaatata 21804197  T

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Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 14330807 - 14330989
Alignment:
19 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 118  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||  ||||||||||||||||||||||||||||||||  |||||| || |||||||||    
14330807 tttcaaggtattaccattcactctctatattataatatgtgttcttgtcaacaaatcaaccatgttcccataaacttgtgactgattctttgttcaattt 14330906  T
119 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatata 202  Q
    |  | ||||||||| ||||| || ||||| |||||||||||||||||||| | ||||||||||||  |||| ||||||||||||    
14330907 c-agggtttatttttttttatttcttagggtttttagtgtgcttaactacctagacctggattcatgtttgatgttgaaatata 14330989  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 58 - 168
Target Start/End: Original strand, 24251537 - 24251645
Alignment:
58 tgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttgtgtttattttgttttacttgttaggatttttagtg 157  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||| || ||| |||||||| | | |||||||||||||||||| ||||| |||||||||    
24251537 tgttttcttcaacaaatcaagcatgttaccataaacttgtacctggttcttg-ttcaattt-tagggtttattttgttttacttattagggtttttagtg 24251634  T
158 tgcttaactac 168  Q
    |||||||||||    
24251635 tgcttaactac 24251645  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 57 - 198
Target Start/End: Original strand, 30231040 - 30231180
Alignment:
57 gtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttgtgtttattttgttttacttgttaggatttttagt 156  Q
    ||||| ||||||||||||||| |||||| |||||||||||||| ||||  |||||||||||| | | |||||||||||||||||| ||||||||||| ||    
30231040 gtgttttcttcaacaaatcaagcatgttaccataaacttgtacatgatgcttggttcaattt-tagggtttattttgttttacttattaggattttttgt 30231138  T
157 gtgcttaactacatggacctggattcacctttgttgttgaaa 198  Q
    ||| |||||||| | ||| ||||||||  |||| ||||||||    
30231139 gtgtttaactacctagacttggattcatgtttgctgttgaaa 30231180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 18748751 - 18748671
Alignment:
65 ttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttgtgtttattttgttttacttgttagg 147  Q
    ||||||||||| | |||||| |||||||||||||||||||| || ||||||||| | | |||||||||||||||||| |||||    
18748751 ttcaacaaatctagcatgttaccataaacttgtacctgattctt-gttcaattt-tagggtttattttgttttacttattagg 18748671  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 18748670 - 18748626
Alignment:
124 gtttattttgttttacttgttaggatttttagtgtgcttaactac 168  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
18748670 gtttattttgttttacttattagggtttttagtgtgcttaactac 18748626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 57 - 198
Target Start/End: Original strand, 23246701 - 23246840
Alignment:
57 gtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttgtgtttattttgttttacttgttaggatttttagt 156  Q
    ||||| ||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||| | | |||||||||||||||||| ||||| ||||||||    
23246701 gtgttttcttcaacaaatcaagcatgttaccataaacttgtacctgattcttg-ttcaattt-tagggtttattttgttttacttattagggtttttagt 23246798  T
157 gtgcttaactacatggacctggattcacctttgttgttgaaa 198  Q
    |||||||||||| | ||| | ||||||  |||| ||||||||    
23246799 gtgcttaactacctagacatagattcatgtttgatgttgaaa 23246840  T

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