View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17844_low_23 (Length: 405)
Name: NF17844_low_23
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 49179934 - 49179559
Alignment:
| Q |
17 |
acaattaagttagtattacagttaaaactattcaataaaataaataatacatccatccagtaatgaaacataaattgcaaagttcttccaccataatggc |
116 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49179934 |
acaattaagttaatattacagttaaaactattcaataaaataa-taatacatccatccaataatgaaacataaattgcaaagttcttccaccataatggc |
49179836 |
T |
|
| Q |
117 |
agttagccgtcaaattagatcatattaaaaggcttctttcgatttcatttgtatgtagagacaatcctatgtccttcaactaactgaaagcttacatttg |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49179835 |
agttaaccgtcaaattagatcatattaaaaggcttctttccatttcatttgtatgcagagacaatcctatgtccttcaactaactgaaagcttacatttg |
49179736 |
T |
|
| Q |
217 |
cgagaaatccttggaaacgaggataactcttcttttaaaatacgccgatttggctttggatttgatgaatggctaatgttgattttcatgacccctaaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49179735 |
cgagaaatccttggaaacgaggataactcttcttttaaaatacgccgatttggctttggatttgatgaatggctaatgttgattttcatgacccctaaaa |
49179636 |
T |
|
| Q |
317 |
gccgcgcattcagtagaatatattttgtaaatcgaagttcatcttcccggccttcatagtttatagtacatgatctg |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49179635 |
gccgcgcattcagtagaatatattttgtaaatcgaagttcatcttcccggccttcatagtttatagtacatgatctg |
49179559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 86 - 390
Target Start/End: Original strand, 49170263 - 49170564
Alignment:
| Q |
86 |
ataaattgcaaagttcttccaccataatggcagttagccgtcaaattagatcatattaaaaggcttctttcgatttcatttgtatgtagagacaatccta |
185 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| || |||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |
|
|
| T |
49170263 |
ataaaatgcaaagttcttccaccataatggctgttcgctgtcaaattagatcatattaagaaccttctttcccgttcatttgtatgtagagacaatccta |
49170362 |
T |
|
| Q |
186 |
tgtccttcaactaactgaaagcttacatttgcgagaaatccttggaaacgaggataactcttcttttaaaatacgccgatttggctttggatttgatgaa |
285 |
Q |
| |
|
||||||||||| || |||||| ||||||| | ||||||||||||| ||||| |||| ||||| |||| || || |||||||| | || || || |
|
|
| T |
49170363 |
tgtccttcaaccaattgaaagtttacattcggaagaaatccttggacacgagtataa---ttcttgtaaaggttgcagacttggcttttgtttaaataaa |
49170459 |
T |
|
| Q |
286 |
tggctaatgttgattttcatgacccctaaaagccgcgcattcagtagaatatattttgtaaatcgaagttcatcttcccggccttcatagtttatagtac |
385 |
Q |
| |
|
|| | |||| | ||||||||||||||||||||||||| | | ||||||||||| |||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
49170460 |
aaagtaccggtgatctgcatgacccctaaaagccgcgcattctgcaaaatatattttgcaaattgaagttcatcttccaagccttcatagtttatagtac |
49170559 |
T |
|
| Q |
386 |
atgat |
390 |
Q |
| |
|
||||| |
|
|
| T |
49170560 |
atgat |
49170564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University