View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17844_low_26 (Length: 397)
Name: NF17844_low_26
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17844_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 9075545 - 9075914
Alignment:
| Q |
11 |
cacagacaaatctaaacaggaacagcttatgattaaaactgaacaacatctgaaaaatttaaaacaagtacttaatttacccgatcatccacgtcagcaa |
110 |
Q |
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| T |
9075545 |
cacacacaaatctaaacaggaacagcttatgattaaaattaaactacattagaataatttaaaacaagaacttaatttacccgattatccacgtcagcaa |
9075644 |
T |
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| Q |
111 |
gaacgtcacagacaaaccatgagaagatttttctctataatttgtgattaattgaggtatctcagcaatcatccaaacaatgacactaataacacctaat |
210 |
Q |
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| T |
9075645 |
gaacgtcacagacaaaccatgagaagatttttctctataatttgtgattaattgaggtatctcagcaatcatccaaacaatgacactaataacacctaat |
9075744 |
T |
|
| Q |
211 |
gtaatagaagctgtctttgcatcacttctcataaccatttgaaccaattgcaaacaatgttgatttccaagacacaatgatgtggaattaccaaatactc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9075745 |
gtaatagaagctgtctttgcatcacttctcataaccatttgaaccaattgcaaacaatgttgatttccaagacacaatgatgtggaattaccaaatactc |
9075844 |
T |
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| Q |
311 |
cttccattgtgtcaaggaattggtatctacaaaatcatcaagagtnnnnnnntcagttgcagaatctctt |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9075845 |
cttccattgtgtcaaggaattggtatctacaaaatcatcaagagtaaaaaaatcagttgcagaatctctt |
9075914 |
T |
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