View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17844_low_3 (Length: 651)

Name: NF17844_low_3
Description: NF17844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17844_low_3
NF17844_low_3
[»] chr3 (2 HSPs)
chr3 (129-588)||(52663917-52664383)
chr3 (11-101)||(17058732-17058822)
[»] chr5 (4 HSPs)
chr5 (11-111)||(20351142-20351242)
chr5 (11-113)||(5584086-5584188)
chr5 (59-102)||(21743112-21743155)
chr5 (15-108)||(4852143-4852236)
[»] chr2 (4 HSPs)
chr2 (11-114)||(19933835-19933938)
chr2 (59-102)||(10420956-10420999)
chr2 (64-102)||(6742874-6742912)
chr2 (66-102)||(3981701-3981737)
[»] chr1 (3 HSPs)
chr1 (11-113)||(42312010-42312112)
chr1 (13-102)||(22069896-22069985)
chr1 (61-102)||(42132196-42132237)
[»] chr8 (1 HSPs)
chr8 (11-107)||(39118032-39118128)
[»] scaffold0015 (1 HSPs)
scaffold0015 (68-102)||(52168-52202)


Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 129 - 588
Target Start/End: Original strand, 52663917 - 52664383
Alignment:
Q  129 tgagaaggatttaacataatgatattcgatctcttaaacagaataatatgagcattagttaatgatgctaaggagtgttttgagacactttataatggcc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||  |||||||||||||||||||    
T  52663917 tgagaaggatttaacataatgatattcgatctcttaaacagaataatatgagcattagttaatgatgataacgagtgtt--gagacactttataatggcc 52664014  T
Q  229 acaacaaaccagtttgttggagtcatttccctttgaggatttgttcgttccaagcctcaacactgtggacttcaatcacttgtccttcttttgccatttt 328  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  52664015 acaacaaaccagtttgttggagtcatttccctt-gaggatttgttcgttccaagcctcaacactgtggacttcaatcacttgtccttcttccgccatttt 52664113  T
Q  329 cct--gtcttaaacttagattagctatgatctcaaacaaagccggcctcttatataagattttctaattagtcaaccatgttaatctctgtcaagtatca 426  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52664114 cctctgtcttaaacttagattagctatgatctcaaacaaagccggcctcttatataagattttctaattagtcaaccatgttaatctctgtcaagtatca 52664213  T
Q  427 aaacatggacacctcatca-cccatgacataacaagaagaagcgcgtcatgtgtgaatgcaatcaaacgtgatcaattatttattttgttagctg----- 520  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||         
T  52664214 aaacatggacacctcatcaccccatgacataacaagaagaagcgcgtcatgtgtgaatgcaatcaaacgtgatcaattgtttattttgttagctgttgac 52664313  T
Q  521 --gcgtgtccataacattaaagaggtgacaagtataaatcaataaattatatttttaattgatttctgtt 588  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52664314 gtgcgtgtccataacattaaagaggtgacaagtataaatcaataaattatatttttaattgatttctgtt 52664383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 17058822 - 17058732
Alignment:
Q  11 agcaaaggcggtcacattatcggctagtttccatattttagttacgtcaccatattgtattgaacacattttaattaatgatatgctataa 101  Q
    ||||||||||  |||||| || ||||||||||| ||||| || | | ||||| ||||||||||||||||||||| |||||| |||||||||    
T  17058822 agcaaaggcgaccacattgtcagctagtttccaaattttggtcatgccaccaaattgtattgaacacattttaagtaatgaaatgctataa 17058732  T

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Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 20351242 - 20351142
Alignment:
Q  11 agcaaaggcggtcacattatcggctagtttccatattttagttacgtcaccatattgtattgaacacattttaattaatgatatgctataaggtttcccc 110  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20351242 agcaaaggcggccacattatcggctagtttccatattttggttacgccaccacattgtattgaacacattttaattaatgatatgctataaggtttcccc 20351143  T
Q  111 t 111  Q
    |    
T  20351142 t 20351142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 5584086 - 5584188
Alignment:
Q  11 agcaaaggcggtcacattatcggctagtttccatattttagttacgtcaccatattgtattgaacacattttaattaatgatatgctataaggtttcccc 110  Q
    ||||||||||| |||||||||| ||| ||| |||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  5584086 agcaaaggcggccacattatcgactaattttcatattttggttacgccaccacattgtattgaacacattttaattaatgatatgctataagatttcccc 5584185  T
Q  111 tct 113  Q
    |||    
T  5584186 tct 5584188  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 21743112 - 21743155
Alignment:
Q  59 accatattgtattgaacacattttaattaatgatatgctataag 102  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||    
T  21743112 accatattgtattaaacacattttgattaatgatatgctttaag 21743155  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 4852236 - 4852143
Alignment:
Q  15 aaggcggtcacattatcggctagtttccatattttagtt-acgtcaccatattgtattgaacacattttaattaatgatatgctataaggtttcc 108  Q
    ||||||||||||||||| |||| ||| ||| |||| ||| || | | || ||||||||||||||||||| |||||||| ||| |||||| |||||    
T  4852236 aaggcggtcacattatcagctaattttcatgttttggttgacat-atcaaattgtattgaacacattttgattaatgaaatgttataagttttcc 4852143  T

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Target: chr2 (Bit Score: 76; Significance: 8e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 19933938 - 19933835
Alignment:
Q  11 agcaaaggcggtcacattatcggctagtttccatattttagttacgtcaccatattgtattgaacacattttaattaatgatatgctataaggtttcccc 110  Q
    ||||||||| | ||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||| |||    
T  19933938 agcaaaggctgccacattatcggctagtttccatattttggttacgccaccacattgtattgaacacattttaattaatgatatgttataaggttttccc 19933839  T
Q  111 tctc 114  Q
    ||||    
T  19933838 tctc 19933835  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 10420999 - 10420956
Alignment:
Q  59 accatattgtattgaacacattttaattaatgatatgctataag 102  Q
    |||||||||||||||||||||||| |||||||||||||| ||||    
T  10420999 accatattgtattgaacacattttgattaatgatatgctttaag 10420956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 6742912 - 6742874
Alignment:
Q  64 attgtattgaacacattttaattaatgatatgctataag 102  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  6742912 attgtattgaacacatcttaattaatgaaatgctataag 6742874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 3981737 - 3981701
Alignment:
Q  66 tgtattgaacacattttaattaatgatatgctataag 102  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  3981737 tgtattgaacacattttgattaatgaaatgctataag 3981701  T

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Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 42312010 - 42312112
Alignment:
Q  11 agcaaaggcggtcacattatcggctagtttccatattttagttacgtcaccatattgtattgaacacattttaattaatgatatgctataaggtttcccc 110  Q
    ||||||||||| ||||||||||  ||||||||||||||| |||| | ||||| ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  42312010 agcaaaggcggccacattatcgattagtttccatattttggttatgccaccacattgtattgaacacattttaattaatgatattctataagttttcccc 42312109  T
Q  111 tct 113  Q
    |||    
T  42312110 tct 42312112  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 22069896 - 22069985
Alignment:
Q  13 caaaggcggtcacattatcggctagtttccatattttagttacgtcaccatattgtattgaacacattttaattaatgatatgctataag 102  Q
    ||||||||| |||||| || ||||||||||| |||||  | | |  | || ||||||||||||||||||||| |||||| ||||||||||    
T  22069896 caaaggcggccacattgtcagctagtttccaaattttgatcatgctatcaaattgtattgaacacattttaaataatgaaatgctataag 22069985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 42132196 - 42132237
Alignment:
Q  61 catattgtattgaacacattttaattaatgatatgctataag 102  Q
    |||||||||||||||||||||||| |||||| ||| ||||||    
T  42132196 catattgtattgaacacattttaaataatgaaatgatataag 42132237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 39118128 - 39118032
Alignment:
Q  11 agcaaaggcggtcacattatcggctagtttccatattttagttacgtcaccatattgtattgaacacattttaattaatgatatgctataaggtttc 107  Q
    ||||||| |||||||||||||   ||||||||||||||| ||||  |||||| ||| ||||||||||||||| |||||||| ||| |||||| ||||    
T  39118128 agcaaagacggtcacattatcaattagtttccatattttggttagttcaccaaattttattgaacacattttgattaatgaaatgttataagttttc 39118032  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 68 - 102
Target Start/End: Complemental strand, 52202 - 52168
Alignment:
Q  68 tattgaacacattttaattaatgatatgctataag 102  Q
    ||||||||||||||||| |||||||||||||||||    
T  52202 tattgaacacattttaagtaatgatatgctataag 52168  T

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